Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ptg000008l:10811493-10811585 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4754.ps.pdf
Locus Name: Cluster_4754
UUUUCAUAUAUUUCUCGCUCUUGGGAAAGGGAAGUUACUCCCCUUUAUGGGGUUUAGGUUCCUUUUUUCAUGAGCGUGACAUAGCAAAGAAAC
.((((...(((.((.(((((.((((((((((((.(((..((((.....))))..))).)))))))))))).))))).)).))).....)))). (-38.20)
UUUUCAUAUAUUUCUCGCUC......................................................................... len:20 al:2
.UUUCAcAUAUUUCUCGCUC......................................................................... len:19 al:1
.UUUCAUAUAUUUCUCGCUC......................................................................... len:19 al:3
..UUCAUAUAUUUCcCGCUC......................................................................... len:18 al:1
..UUCAUAUAUUUCUCGCUC......................................................................... len:18 al:2
...UCAUAUAUUUCUCGCUC......................................................................... len:17 al:1
...................CUUGGGAAAGGGAAGUUACUC..................................................... len:21 al:2
...................CUUGGGAAAGGGAAGU.......................................................... len:16 al:1
...................CUUGGGAAgGGGAAGUUACU...................................................... len:20 al:1
....................UUGGGAAAGGGAAGUUACUCCCa.................................................. len:23 al:19
....................UUGGGAAAGGGAAGaUACUCC.................................................... len:21 al:1
....................UUGGGAAAGGGAAGUUACUu..................................................... len:20 al:26
....................UUGGGgAAGGGAAGUUACU...................................................... len:19 al:2
....................UUGGGAAAGGGAAGUUACg...................................................... len:19 al:14
....................UUGGGAAAGGGAAGUcACUC..................................................... len:20 al:1
....................UUGGGAcAGGGAAGUUACUCCCCU................................................. len:24 al:1
....................UUGGGAAAGGGAgGUUACUC..................................................... len:20 al:2
....................UUGGGAAAGGGAAGUUACUCa.................................................... len:21 al:89
....................UUGaGAAAGGGAAGUUACUC..................................................... len:20 al:2
....................UUGGGAAAGGGAgGUUACUCC.................................................... len:21 al:3
....................UUGGGAAAGGGAAGUUgCUC..................................................... len:20 al:1
....................UUGGGAAAGGGAAGUUACUCCCg.................................................. len:23 al:1
....................cUGGGAAAGGGAAGUUACUCC.................................................... len:21 al:3
....................UaGGGAAAGGGAAGUUACUC..................................................... len:20 al:1
....................UUGGGgAAGGGAAGUUACUCC.................................................... len:21 al:4
....................UUGGGcAAGGGAAGUUACU...................................................... len:19 al:1
....................UUGGGAAAGGGAgGUUACU...................................................... len:19 al:2
....................UUGGGAAAGGGAAGUUAaU...................................................... len:19 al:1
....................UUGGGAAAGGGAAGUUACUCC.................................................... len:21 al:1027
....................UUGGGAAAGGGAAGUUACUCCu................................................... len:22 al:7
....................UUGGGAAAGGGcAGUUACU...................................................... len:19 al:1
....................UUGGGAAAGGGAAGUUACUCCCuU................................................. len:24 al:2
....................UUGGGAAAGGGAAGU.......................................................... len:15 al:1
....................UUGGGAAAGGGuAGUUACU...................................................... len:19 al:1
....................UUGGGgAAGGGAAGUUACUC..................................................... len:20 al:1
....................UUGGGAgAGGGAAGUUACUCC.................................................... len:21 al:3
....................UUGGGAAuGGGAAGUUACUCCCCU................................................. len:24 al:1
....................UUGGGAAAGGGAAGUUACUgC.................................................... len:21 al:1
....................gUGGGAAAGGGAAGUUACU...................................................... len:19 al:2
....................UUGGGAAAGGGAAGUUACUCCCCUa................................................ len:25 al:2
....................UUaGGAAAGGGAAGUUACUC..................................................... len:20 al:1
....................UUGGGAAAGGGAAGUUAuUCCCCU................................................. len:24 al:1
....................UUGGGAAAGGGAAGUUACUCCCCUaU............................................... len:26 al:7
....................UUGGGAAAGGGAAGUUACUa..................................................... len:20 al:10
....................UUaGGAAAGGGAAGUUACU...................................................... len:19 al:3
....................UUGGGAAAGGGAAGUUACUCCCCc................................................. len:24 al:28
....................UUGGaAAAGGGAAGUUACU...................................................... len:19 al:1
....................UUGGGAAAGGGAAGcUACUCCCC.................................................. len:23 al:1
....................UUGGGAAgGGGAAGUUACUCC.................................................... len:21 al:6
....................UUGGGAAAGGGAAGUUACUCCCCg................................................. len:24 al:4
....................UUGGGAAAGGGAAaUUACU...................................................... len:19 al:1
....................UUGGGAAAGGGAAGUUACUCCCu.................................................. len:23 al:29
....................UUGGGAAAGGGgAGUUACUC..................................................... len:20 al:3
....................UUGGGAAAaGGAAGUUACUCC.................................................... len:21 al:1
....................UUGGGAAAGGGAAGUUACUCg.................................................... len:21 al:2
....................UUGGGAAAGGGgAGUUACU...................................................... len:19 al:3
....................cUGGGAAAGGGAAGUUACU...................................................... len:19 al:2
....................UgGGGAAAGGGAAGUUACUCC.................................................... len:21 al:1
....................UUGGGAAAGGGAAGcUACUCC.................................................... len:21 al:4
....................UUGGGAAAGGGgAGUUACUCC.................................................... len:21 al:3
....................UUGGGAAAGGGAAGcUACUCCC................................................... len:22 al:2
....................UUGGGAAAGGGAAGUUACUCCCCUU................................................ len:25 al:10
....................cUGGGAAAGGGAAGUUACUC..................................................... len:20 al:1
....................UUGGGAcAGGGAAGUUACUCCCC.................................................. len:23 al:1
....................UUGGGAAAGGGAcGUUACUCC.................................................... len:21 al:1
....................UUGGGAAAGGGAAGUUACUCCa................................................... len:22 al:17
....................UUGGGAAgGGGAAGUUACUCCCC.................................................. len:23 al:1
....................UUGGGAAAGGGAAGUUACUCCC................................................... len:22 al:17
....................gUGGGAAAGGGAAGUUACUC..................................................... len:20 al:1
....................UUGGGAAgGGGAAGUUACU...................................................... len:19 al:3
....................UUGGGAAAaGGAAGUUACUCCCC.................................................. len:23 al:1
....................UUGGGAAAGGGAAGUUgCU...................................................... len:19 al:3
....................UUGGGAAAGGGAAGUUACUCCCC.................................................. len:23 al:187
....................UUGGGAgAGGGAAGUUACU...................................................... len:19 al:2
....................UUGGGAAAGGGAAGUUACcCCCCU................................................. len:24 al:2
....................UUGGGAAAGGGAAGUUACUuC.................................................... len:21 al:3
....................UUGGGAAAGGGcAGUUACUCC.................................................... len:21 al:3
....................UUGGGAAAGGGgAGUUACUCCCC.................................................. len:23 al:1
....................UUGGGAAAGGGAAGUUACUCCCCU................................................. len:24 al:288
....................UUGGGAAAGGGAAGUUACUC..................................................... len:20 al:657
....................UUGGGAAAGGGcAGUUACUCCCCU................................................. len:24 al:1
....................UUGGGAAAGGGAAGUUcCUCC.................................................... len:21 al:1
....................UUGGGAAAGGGAAaUUACUCC.................................................... len:21 al:3
....................aUGGGAAAGGGAAGUUACUCC.................................................... len:21 al:1
....................UUGGGAAAGGGAAGUUACUCCCCaUU............................................... len:26 al:3
....................UUGGGAAuGGGAAGUUACUC..................................................... len:20 al:2
....................UaGGGAAAGGGAAGUUACU...................................................... len:19 al:1
....................UUGGGAAAGGGAAGUUACUCCCCcU................................................ len:25 al:2
....................UUGGGgAAGGGAAGUUACUCCC................................................... len:22 al:1
....................UcGGGAAAGGGAAGUUACUC..................................................... len:20 al:3
....................UUGGGAgAGGGAAGUUACUC..................................................... len:20 al:4
....................UUGGGAAAGGGAAGUUACUCCCCa................................................. len:24 al:37
....................UUGGGAAAGGGAAGUUACUCCCCUUU............................................... len:26 al:2
....................UUGGGAAAGGGAAGUUAC....................................................... len:18 al:14
....................UUGGGAAcGGGAAGUUACUC..................................................... len:20 al:2
....................UUGaGAAAGGGAAGUUACUCC.................................................... len:21 al:1
....................UUGGGAAAGGGgAGUUACUCCCCU................................................. len:24 al:1
....................UUGGGAAgGGGAAGUUACUC..................................................... len:20 al:7
....................UUGGGgAAGGGAAGUUACUCCCC.................................................. len:23 al:2
....................UUGGGAAAGaGAAGUUACUC..................................................... len:20 al:2
....................UUGGGAAAGGGAAGUUAu....................................................... len:18 al:2
....................UUGGaAAAGGGAAGUUACUCCC................................................... len:22 al:1
....................UUGGGAAAGGGAcGUUACU...................................................... len:19 al:1
....................UUGGGAAAGGGAAGaUACUC..................................................... len:20 al:1
....................UUGGGAcAGGGAAGUUACUCC.................................................... len:21 al:1
....................UUuGGAAAGGGAAGUUACUCCCCU................................................. len:24 al:1
....................UUGGGAAAGGGAAGgUACUCC.................................................... len:21 al:1
....................UUGGGAAAGGGAAGUUACUCCaC.................................................. len:23 al:1
....................UUGGGAAAGGGAAGcUACU...................................................... len:19 al:1
....................UUGGGAAAuGGAAGUUACUCC.................................................... len:21 al:2
....................UUGGGAAAGGGAAGUUACcC..................................................... len:20 al:9
....................UUGGGAAAGGGAgGUUACUCCCCU................................................. len:24 al:1
....................UUGGGAAAGGGAAGUUACUCu.................................................... len:21 al:203
....................UUGGGAAAGGGAgGUUACUCCC................................................... len:22 al:1
....................UUGGGAAAGGGAcGUUACUCCCCU................................................. len:24 al:1
....................UUGGGAAAGGGAAGUU......................................................... len:16 al:2
....................UUGGGAAgGGGAAGUUACUCCCCU................................................. len:24 al:1
....................UUGGGAAAGGGAuGUUACUC..................................................... len:20 al:1
....................UUGGGAAAGGGAAGUUAa....................................................... len:18 al:3
....................UUGGGAAAGGGAAGUUACU...................................................... len:19 al:760
....................UcGGGAAAGGGAAGUUACUCC.................................................... len:21 al:4
....................UUGGGAAAGGGAgGUUACUCCCC.................................................. len:23 al:1
....................UcGGGAAAGGGAAGUUACU...................................................... len:19 al:1
....................UUGGGAAAGGGAAGUcACU...................................................... len:19 al:2
....................UUGGGAAAGGGAAGUUACc...................................................... len:19 al:72
....................UUGGGAAAGGGAAGUUACa...................................................... len:19 al:14
....................UUGGGAAAGGGAAGUcACUCC.................................................... len:21 al:1
.....................UGGGAAAGGGAAGUUACUC..................................................... len:19 al:3
.....................UGGGAAAGGGAAGUUACU...................................................... len:18 al:10
.....................UaGGAAAGGGAAGUUACUCC.................................................... len:20 al:1
.....................UGGGAAAGGGAAGUUACUCCCCU................................................. len:23 al:1
.....................UGGGAAAGGGAAGUUACUCu.................................................... len:20 al:4
.....................UGGGAAAGGGAAGUUACUCC.................................................... len:20 al:2
.....................UGGGAAAGGGAAGUUACcCC.................................................... len:20 al:1
.....................UGGGAAgGGGAAGUUACUCCC................................................... len:21 al:1
......................GGGAAAGGGAAGUUACUC..................................................... len:18 al:1
......................GGGAAAGGGAAGUUACUCa.................................................... len:19 al:1
.........................................CCUUUAUGGGGUUUAGGUUCCUUUUUUCAUu..................... len:31 al:4
.........................................CCUUUAUGGGGUUUAGGUUCCUUUUUUCA....................... len:29 al:1
.........................................CCUUUAUGGGGUUUAGGUUCCUUUUUUCAUG..................... len:31 al:6
..........................................CUUUAUGGGGUUUAGGcUCCUUUUUUCAUGA.................... len:31 al:1
..........................................CcUUAUGGGGUUUAGGUUCCUUUUUUCAUGA.................... len:31 al:1
..........................................CUUUAUGGGGUUUAGGUUCCUUUUUUCAUGg.................... len:31 al:1
..........................................CUcUAUGGGGUUUAGGUUCCUUUUUUCAUGA.................... len:31 al:1
..........................................CUUUAUGGGGUUUAGGUUCCUUUUUUCAUG..................... len:30 al:4
..........................................CUUUAUGGGGUUUAGGUUCCUUUUUUCA....................... len:28 al:1
..........................................CUUUAUGGGGUUUAGGUUCCUUUUUUCAUu..................... len:30 al:4
..........................................CUUUAUGGGGUUUAGGUUCCUUUcUUCAUGA.................... len:31 al:1
..........................................CUUUAUGGGGUUUAGGUUCCUcUUUUCA....................... len:28 al:1
..........................................CUUUAUGGGGcUUAGGUUCCUUUUUUCAUGA.................... len:31 al:2
..........................................CUUUAUGGGGUUUAGGUUCCUUUUUUCAUGA.................... len:31 al:49
...........................................UUUAUGGGGUUUAGGUUCCUUUUUUCAUGu.................... len:30 al:1
...........................................UUUAUGGGGUUUAGGUUCCUUUUUUCAUG..................... len:29 al:1
...........................................UUUAUGGGGUUUAGGUUCCUUUUUUCAUu..................... len:29 al:1
...........................................UUUAUGGGGUUUAGGUUCCUUUUUUCAUGA.................... len:30 al:7
..................................................GGUUUAGGUUCCUcUUUUCAUGA.................... len:23 al:1
..................................................GGUUUAGGUUCCUcUUUUCA....................... len:20 al:1
..................................................GGUUUAGGUUCCUUUUcUCAUGA.................... len:23 al:1
..................................................GGUUUAGGUUCCUUUUUU......................... len:18 al:1
..................................................GGUUUAGGUUCCUUUUUUCAU...................... len:21 al:3
..................................................GGUUUAGGUUCCUUUUUUCAUGA.................... len:23 al:145
..................................................GGUUUAGGUUCCUUUUUUCAcG..................... len:22 al:1
..................................................GGUUUAGGUUCCUUUUUUCAUGg.................... len:23 al:2
..................................................GGUUUAGGUUCCUUUUUUCAUG..................... len:22 al:28
..................................................GGUUUAGGUUCCUUUUUcCAUGA.................... len:23 al:3
..................................................GGUUUAGGUUCCUUUUUcCAUG..................... len:22 al:1
..................................................GGUUUAGGUUCCUUUUUUCAUGu.................... len:23 al:4
..................................................GGUUUAGGUUCCUUUUUUCAUGAu................... len:24 al:20
..................................................GGUUUAGGUUCCUUUUUUCAUa..................... len:22 al:5
..................................................GGUUUAGGUUCCUUUUUUCAUu..................... len:22 al:3
..................................................GGUUUAGGUUCCUUUUUUC........................ len:19 al:1
..................................................GGUUUAGGUUCCUUUUUUCA....................... len:20 al:2
..................................................GGUUcAGGUUCCUUUUUUCAUGA.................... len:23 al:1
..................................................GGUUUAGGUUCCUUUUUUCAUcA.................... len:23 al:1
..................................................GGUUUAGGcUCCUUUUUUCAUG..................... len:22 al:1
..................................................GGUUUAGGUUCCcUUUUUCAUGA.................... len:23 al:3
..................................................GGUUUAGGUUCCUUUUUUCgUGA.................... len:23 al:3
....................................................UUUAGGUUCCUUUUUUCAUGA.................... len:21 al:4
....................................................UUUAGGUUCCUUUUUUCAUG..................... len:20 al:2
....................................................UUUAGGUUCCUUUUUUCA....................... len:18 al:1
....................................................UUUAGGUUCCUUUUUUCAUGu.................... len:21 al:1
.....................................................UUAGGUUCCUUUUUUCAU...................... len:18 al:1
.....................................................UUAGGUUCCUUUUUUCAUc..................... len:19 al:1
......................................................UAGGUUCCUUUUUUCAUGA.................... len:19 al:1
.........................................................................GCGUGACAUAGCAAAGAAAC len:20 al:1