Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ptg000007l:2684677-2684772 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4026.ps.pdf
Locus Name: Cluster_4026
UAAGUUAUUAAACUGCCUCCUGUUUCAGUUUUUCUCGGUGUUUGUUAACAAACGCUGAAAAAGACUGAUGCAGGAGGCAGUUUAACGUUUGUCCUG
.......((((((((((((((((.(((((((((.((((((((((....)))))))))).))))))))).))))))))))))))))........... (-52.10)
...........uCUGCCUCCUGUUUCA..................................................................... len:16 al:1
............CUGCCUCCUGUUUCAGUUUUUCUCGGUGUUU..................................................... len:31 al:1
....................UaUUUCAGUUUUUCUCGGUGUUUG.................................................... len:24 al:4
....................UGUUUCAGUUUUUCUCGGUGUUUGUa.................................................. len:26 al:2
....................UaUUUCAGUUUUUCUCGGUGUUU..................................................... len:23 al:1
....................UGUUUCAGUUUUUCUCGGUGUU...................................................... len:22 al:7
....................UGUUUCAGUUUUUCUCGGUGUUUG.................................................... len:24 al:2
....................UGUUUCAGUUUUUCUCGGUGUUUaU................................................... len:25 al:1
....................UGUUUCAGUUUUUCUCGGUGUUc..................................................... len:23 al:1
....................UGUUUCAGUUUUUCUCGGUGUUUGU................................................... len:25 al:2
....................UGUUUCAGUUUUUCUCGGUGc....................................................... len:21 al:1
....................UGUUUCAGUUUUUCUCGGUGUc...................................................... len:22 al:1
....................UGUUUCAGUUUUUCUCGGUGU....................................................... len:21 al:3
.....................aUUUCAGUUUUUCUCGGUGUUUGU................................................... len:24 al:1
.....................aUUUCAGUUUUUCUCGGUGUUUG.................................................... len:23 al:3
.....................GUUUCAGUUUUUCUCGGUGUU...................................................... len:21 al:1
......................UUUCAGUUUUUCUCGGUGUUUGU................................................... len:23 al:7
......................UUUCAGUUUUUCUCGGUGUUUG.................................................... len:22 al:9
.......................UUCAGUUUUUCUCGGUGUUUG.................................................... len:21 al:6
.......................UUCAGUUUUUCUCGGUGUUUGU................................................... len:22 al:2
..........................................UGUUAACAAACGCUGAAAAAGACUGAUGC......................... len:29 al:1
...........................................GUUAACAgACGCUGAAAAAGACUGAUGCAGG...................... len:31 al:1
............................................UUAACAAACGCUGAAAAAGACUGAUGCAGG...................... len:30 al:1
............................................UUAACAgACGCUGAAAAAGACUGAUGCAGG...................... len:30 al:6
............................................UUAACAgACGCUGAAAAAGACUGAUGC......................... len:27 al:1
..................................................AACGCUGAAAAAGACUGAUGC......................... len:21 al:4
..................................................AACGCUGAAAAAGACUGAUG.......................... len:20 al:5
..................................................gACGCUGAAAAAGACUGAUGCAGG...................... len:24 al:4
..................................................AACGCUGgAAAAGACUGAUGC......................... len:21 al:1
..................................................AACGCUGAAAAAGACUGAUGCA........................ len:22 al:1
..................................................AACGCUGAAAAAGAuUGAUGCAGG...................... len:24 al:1
..................................................AACGCUGAAAAAGACUGAUGCAGG...................... len:24 al:25
..................................................gACGCUGAAAAAGACUGAUGCA........................ len:22 al:2
..................................................AACGCUGAAgAAGACUGAUGCAGG...................... len:24 al:1
..................................................AACGCUGAAAAAGACUGAUGCAGa...................... len:24 al:3
..................................................AACGCUGAAAAAGACUGAUGCAcG...................... len:24 al:1
..................................................gACGCUGAAAAAGACUGAUG.......................... len:20 al:3
..................................................AACGCUGAAAAAGgCUGAUGC......................... len:21 al:3
..................................................AACGCUGAAAAAGACUGAUGCAG....................... len:23 al:1
..................................................gACGCUGAAAAAGACUGAUGC......................... len:21 al:2
...................................................ACGCUGAAAAAGACUGAUGCAGa...................... len:23 al:1
...................................................ACGCUGAAgAAGACUGAUGCAGG...................... len:23 al:1
...................................................ACGCUGAAAAAGACUGAUGCA........................ len:21 al:2
...................................................ACGCUGAAAAAGACUGAUGCAGG...................... len:23 al:18
...................................................ACGCUGAAAAAGACUGAUGCAGu...................... len:23 al:1
...................................................ACGCUGAAAAAGACUGAUGCu........................ len:21 al:1
...................................................ACGCUGAAAAAGACUaAUGCAGG...................... len:23 al:1
...................................................ACGCUGAAAAAGACUGAUGC......................... len:20 al:3
....................................................CGCUGAAAAAGACUGAUGCAGGu..................... len:23 al:1
....................................................CGCUGAAAAAGACUGAUGC......................... len:19 al:1
....................................................CGCUGAAAAAGACUGAUGCAGa...................... len:22 al:1
....................................................CGCUGAAAAAGACUGAUGCAGGA..................... len:23 al:1
....................................................CGCUGAAAAAGACUGAUGCAGG...................... len:22 al:8
....................................................CGCUGAAAAAGACUGAUGuAGG...................... len:22 al:1
..........................................................AAAAGACUGuUGCAGGAG.................... len:18 al:1
...........................................................AAAGACUGAUGCAGGAGGCAGUUU............. len:24 al:1