Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000007l:3377283-3377376 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_3880.ps.pdf
Locus Name: Cluster_3880
UACAGCAAGGGUUGGAGGUUACCAGACCCCUGCAAUCAAAGAACUUUUUGUCUUUGAUUGCUGUGAUCUGGUUAUCUCGACUUCUUAACAACGA
......(((((.(.(((((.((((((.(.(.(((((((((((........))))))))))).).).)))))).))))).).)))))........ (-33.50)
UACAGCAAGGGUUGGAGGUU.......................................................................... len:20 al:2
..CAGCAAGGGUUGGAGGUU.......................................................................... len:18 al:2
....................gCCAGACCCCUGCAAUCAAAGA.................................................... len:22 al:1
....................ACCAGACCCCUGCAAUCAAAGA.................................................... len:22 al:24
....................ACCAGACCCCUGCAAUCAAAGAA................................................... len:23 al:1
....................ACCgGACCCCUGCAAUCAAAGA.................................................... len:22 al:98
....................ACCgGACCCCUGCAAUCAA....................................................... len:19 al:2
....................ACCgGACCCCUGCAAUCAAAG..................................................... len:21 al:2
....................ACCAGACCCCUGCAAUCAA....................................................... len:19 al:5
....................ACCAGACCCCUGCAAUCAAAG..................................................... len:21 al:2
....................ACCcGACCCCUGCAAUCAAAGA.................................................... len:22 al:1
....................ACCAGACCCCUGCAAUCAu....................................................... len:19 al:2
......................CgGACCCCUGCAAUCAAAGA.................................................... len:20 al:1
......................CAGACCCCUGCAAUCAAAGA.................................................... len:20 al:1
..........................................gCUUUUUGUCUUUGAUUGCUGUGAUCUGGUU..................... len:31 al:1
...........................................CUUUUUGUCUUUGAUUGCUGUGAUCUGGUUA.................... len:31 al:1
....................................................UUUGAUUGCUGUGAUCUc........................ len:18 al:2
....................................................UUUGAUUGCUGUGAUC.......................... len:16 al:2
....................................................UUUGAUUGCUGUGAUCUGGUUAUuU................. len:25 al:3
....................................................UUUGAcUGCUGUGAUCUGGUU..................... len:21 al:2
....................................................UUUGAUUGCUGUGAUCcGGUUA.................... len:22 al:2
....................................................UUUGgUUGCUGUGAUCUGGUUAU................... len:23 al:1
....................................................UUUGgUUGCUGUGAUCUGGUU..................... len:21 al:2
....................................................UUUGAUUGCUGUGAUCUGGUUu.................... len:22 al:9
....................................................UUUGAUUGCUGUGAUCUGGUUAUa.................. len:24 al:3
....................................................UUUGAUUGCUGUGAUCUGGUUAc................... len:23 al:8
....................................................UUcGAUUGCUGUGAUCUGGUUAU................... len:23 al:1
....................................................UUUGAUUGCUGUGAUCcG........................ len:18 al:1
....................................................cUUGAUUGCUGUGAUCUGGUU..................... len:21 al:2
....................................................UUUGAUUGCUGUGAUCUGGUUuU................... len:23 al:5
....................................................UUUGAUUGCUGUGgUCUGGUU..................... len:21 al:3
....................................................UUUGAUUGCUGUGAUCUGGUUAU................... len:23 al:72
....................................................UUUGAUUGCUGUGAUCUGGUUA.................... len:22 al:371
....................................................UUUGAUUGCUGUGAUCUGG....................... len:19 al:9
....................................................UUUGAUUGCUGUGAUCUGGUc..................... len:21 al:12
....................................................UUUGAUUGCUGUGgUCUGGUUA.................... len:22 al:3
....................................................UUUGAUUGCUGUGAcCUGGUUAU................... len:23 al:1
....................................................UUUGAUUGCUGcGAUCUGGUU..................... len:21 al:1
....................................................UUUGAUUGCUGUGAUCUGGUUAUu.................. len:24 al:10
....................................................UUUGAUUGCUGUGAUCUGGa...................... len:20 al:2
....................................................cUUGAUUGCUGUGAUCUGGUUA.................... len:22 al:3
....................................................UUUGAUUGCUGUGgUCUGGUUAU................... len:23 al:3
....................................................UUUGAUUGCUGUGAUCUGGUUAg................... len:23 al:1
....................................................UUUGAUcGCUGUGAUCUGGUUA.................... len:22 al:2
....................................................UUUGAUUGCUGUGAUCUuGUUAU................... len:23 al:1
....................................................UUUGAUUGCUGUGAUCUGGcUAU................... len:23 al:1
....................................................UUUGAUUGCUGUGAUCUGGUUAUC.................. len:24 al:1
....................................................UUUGAUUGCUGUGAUCUGGcU..................... len:21 al:3
....................................................UUUGAUcGCUGUGAUCUGGUUAU................... len:23 al:1
....................................................UUUGAUUGCUGUGAUCUGGUg..................... len:21 al:2
....................................................UUUGAUUGCUGUGAUCUGGU...................... len:20 al:21
....................................................UUUGAcUGCUGUGAUCUGGUUA.................... len:22 al:2
....................................................UUUGgUUGCUGUGAUCUGGUUA.................... len:22 al:1
....................................................UUUGAUUGCUGUGAUCUGGUa..................... len:21 al:2
....................................................UUUGAUUGCUGUGAUCUGGUcA.................... len:22 al:3
....................................................UUUGAUUGCUGUGAUCUGGUUc.................... len:22 al:1
....................................................UUUGAUUGCUGUGAUCUGGUgA.................... len:22 al:1
....................................................UUUGAUUGCUGUGAUCUGGUU..................... len:21 al:194
....................................................UUUGAUUGCcGUGAUCUGGUUA.................... len:22 al:1
....................................................UUUGAUUGCUGUGAUCUGc....................... len:19 al:1
....................................................UUUGAUUGCUaUGAUCUGGUUA.................... len:22 al:1
....................................................UUUGAUUGCUGUGAUCUGGc...................... len:20 al:5
....................................................UUUGAUUGCUGUGAUCUG........................ len:18 al:20
....................................................UUUGAUUGCUGUGAUCUGGUUg.................... len:22 al:207
....................................................UUUGAUUGCUGUGAUCUGGUUgU................... len:23 al:134
.....................................................UUGAUUGCUGUGAUCUGGUUAUu.................. len:23 al:1
.....................................................UUGAUUGCUGUGAUCUGGUU..................... len:20 al:1
.....................................................UUGAUUGCUGUGAUCUGGUUA.................... len:21 al:6
.....................................................UUGAUUGCUGUGAUCUGGUc..................... len:20 al:1
.....................................................UUGAUUGCUGUGAUCUGGUUu.................... len:21 al:1
......................................................UGAUUGCUGUGAUCUGGUUgU................... len:21 al:3