Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ptg000002l:7337508-7337601 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_3109.ps.pdf
Locus Name: Cluster_3109
AGAAUAUCAGUGAGGUUAAAAAUGAUCCCUGCUCUUAUGAAUGUAAUUAGGUUCAUAACAGUGAGGACCAUUCUUGACUUCAUUUCAUUUCUGU
((((....(((((((((((.((((.(((.((((.((((((((........)))))))).)))).))).)))).)))))))))))....)))).. (-30.70)
................UAAAAAUGAUCCCUGCUCUUA......................................................... len:21 al:1
..................AAAAUGAUCCCUGCUCUUAU........................................................ len:20 al:1
..................AAAAUGAUCCCUGuUCUUA......................................................... len:19 al:1
...................AAAUGAUCCCUGCUCUUAUGAAUGUAAU............................................... len:28 al:1
...................AAAUGAUCCCUGCUCUUAUG....................................................... len:20 al:1
....................AAUGAUCCCUGCUCUUAUGAAU.................................................... len:22 al:126
....................AAUGAUCCaUGCUCUUAUGAA..................................................... len:21 al:1
....................AAUGAUCCCUGCUCUUAcGAAUGU.................................................. len:24 al:1
....................AAUGAUCCCUGCUCUUAUGAAc.................................................... len:22 al:4
....................AAUGAUCCCUGCUCUUAUGAAUGUAA................................................ len:26 al:2
....................AAUGAUCCCUGCUCUUAUGAAUc................................................... len:23 al:1
....................AAUGAUCCCUGuUCUUAUGAAUG................................................... len:23 al:2
....................AAUGAUCCCUGCUCUUAUGAAUuU.................................................. len:24 al:3
....................AAUGAUCCCUGCUCUUAUG....................................................... len:19 al:9
....................AAUGAUCCCUGCUCUUAUGAAUa................................................... len:23 al:5
....................AAUGAcCCCUGCUCUUAUGAAU.................................................... len:22 al:1
....................AAUGAUCCCUGCUCUUAUGAAa.................................................... len:22 al:2
....................AAUGAUCCCUGCUCUUAUGAA..................................................... len:21 al:3
....................AAUGAUCCCUGCUCcUAUGAA..................................................... len:21 al:1
....................AAUGAUCCCUGCUCUUAUGAAUGUAAUU.............................................. len:28 al:3
....................AAUGAUCCCUGCUCUUAUGAAUu................................................... len:23 al:47
....................AAUGAUCCCUGCUCUUAUGAAUuUA................................................. len:25 al:1
....................AAUGAUCCCUGCUCUUAUGA...................................................... len:20 al:13
....................AAUGAUCCCUGCUCUUAUGAAUGUAAUUAGG........................................... len:31 al:1
....................AAUGAUCCCUGCUCUUAU........................................................ len:18 al:1
.....................AUGAUCCCUGCUCUUAUGAAUGUA................................................. len:24 al:1
......................UGAUCCCUGCUCUUAUGu...................................................... len:18 al:1
......................UGAUCCCUGCUCUUAUGAAUGU.................................................. len:22 al:1
......................UGAUCCCUGCUCUUAUGAAUu................................................... len:21 al:2
......................UGAUCCCUGCUCUUAUGAA..................................................... len:19 al:1
......................UGAUCCCUGCUCUUAUGAAc.................................................... len:20 al:1
......................UGAUCCCUGCUCUUAUGAAU.................................................... len:20 al:3
...................................................UUCAUAACAGUGAGGACCAUUCUa................... len:24 al:1
...................................................UUCAUAACAGUGAGGACCAU....................... len:20 al:1
...................................................UUCAUAACAGUGAGGACCAUUCUUu.................. len:25 al:1
...................................................UUCAUAACAGUGAGGACCAUUCU.................... len:23 al:5
...................................................UUCAUAACAGUGAGGACa......................... len:18 al:1
...................................................UUCAUAACgGUGAGGACCAUUCU.................... len:23 al:2
....................................................UCAUAACAGUGAGGACCAUUCc.................... len:22 al:13
....................................................UCAUAACAGUGAGGACCAUUCUc................... len:23 al:1
....................................................UCAUAgCAGUGAGGACCAU....................... len:19 al:1
....................................................UCAUcACAGUGAGGACCAUUCU.................... len:22 al:1
....................................................UCgUAACAGUGAGGACCAUUCUU................... len:23 al:1
....................................................UCAUAACAGUGAGGACCAUUC..................... len:21 al:15
....................................................UCAUAACAGUGAGGACCAUUCg.................... len:22 al:2
....................................................UCAUAACAGUGAGGACCAaU...................... len:20 al:1
....................................................UCAUAACAGUGAGGACC......................... len:17 al:1
....................................................UCAUAACAGUGAGGACCAUUCa.................... len:22 al:8
....................................................UCAUuACAGUGAGGACCAUU...................... len:20 al:1
....................................................UCAUAACAGUGAGGACCAUUCUa................... len:23 al:7
....................................................UCAUAACgGUGAGGACCAUU...................... len:20 al:2
....................................................aCAUAACAGUGAGGACCAUUCU.................... len:22 al:1
....................................................UCAUAACAGUGAGGACCAUU...................... len:20 al:8
....................................................UCAUAACAGUGAGGACCAUUCaU................... len:23 al:1
....................................................UCAUAACAGUGAGGACCAUUCU.................... len:22 al:218
....................................................UCAUAACAGUGAGGACCAUUCUU................... len:23 al:12
....................................................UCAUAgCAGUGAGGACCAUUCU.................... len:22 al:1
....................................................UCAUAACcGUGAGGACCAUUCU.................... len:22 al:1
....................................................UCAUAACAGUGAaGACCAUUCU.................... len:22 al:1
....................................................UCAUAACAGUGAGGACCAUUCUUu.................. len:24 al:1
....................................................UCAUAACAGUGAGGACCAU....................... len:19 al:6
....................................................UCAUAACAGUGAGGACCAUc...................... len:20 al:1
.....................................................CAUAACAGUGAGGACCAUUCa.................... len:21 al:1
.....................................................CAUAACAGUGAGGACCAUUCg.................... len:21 al:1
.....................................................CAUAACAGUGAGGACCAUUCU.................... len:21 al:11
......................................................AUAACAGUGAGGACCAUUCU.................... len:20 al:3
..........................................................CAGUGAGGACCAUUCUUGACUU.............. len:22 al:1
............................................................GUGAGGACCAUUCUUGACUUC............. len:21 al:1
..........................................................................UGACUUCAUUUCAUUUCUGU len:20 al:1