Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000001l:7186600-7186693 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_2408.ps.pdf
Locus Name: Cluster_2408
UGUACUUUUCCUUUAGUACAUGUGGCAUAUCAUUUUCAAACAUUAAAAUGUUUGAAAAUGAUAUGCUAGAUGUACUAAAAUCGUCAUCUUUAGC
...........((((((((((.(((((((((((((((((((((....))))))))))))))))))))).))))))))))............... (-42.00)
..UACUUUUCCUUUAGUACA.......................................................................... len:18 al:3
....................UGUGGCAUAUCcUUUUCAAACA.................................................... len:22 al:1
....................UGUGGCAUAUCAUUUUCAAACA.................................................... len:22 al:6
....................UGUGGCAUAUCAUUUUCAAAC..................................................... len:21 al:2
..........................................UUAAAAUGUUUGAAAAUGAUAUGCcAGAUG...................... len:30 al:1
................................................UGUUUGAAAAUGAUAUGCUAGA........................ len:22 al:4
.................................................cUUUGAAAAUGAUAUGCUAGAUG...................... len:23 al:1
..................................................UUUGAAAAUGgUAUGCUAGAUGU..................... len:23 al:1
..................................................cUUGAAAAUGAUAUGCUAGAUG...................... len:22 al:3
..................................................UUUGAAAAUGAUAUGCUAGc........................ len:20 al:1
..................................................UUUGAAAAUGAUAUGCUAGAUuU..................... len:23 al:2
..................................................UUUGAcAAUGAUAUGCUAGAUGU..................... len:23 al:1
..................................................UUcGAAAAUGAUAUGCUAGAUG...................... len:22 al:1
..................................................UUUGAAgAUGAUAUGCUAGAUG...................... len:22 al:4
..................................................UUUGAAAAUGAUAUGCUgGAUG...................... len:22 al:3
..................................................UUUGAAAAUGAcAUGCUAGAUG...................... len:22 al:3
..................................................UUUGAAAAUGAUAUGuUAGAU....................... len:21 al:2
..................................................UUUGAcAAUGAUAUGCUAGAUG...................... len:22 al:2
..................................................UUUGAgAAUGAUAUGCUAGAUG...................... len:22 al:6
..................................................UUUGAAAAUGAUAUGCcAGAUGU..................... len:23 al:16
..................................................UUUGAAAAUGAUAUGCUAG......................... len:19 al:4
..................................................UUUGAAAAUGAUAcGCUAGAUG...................... len:22 al:3
..................................................UUUGAAAAUGAUAUGCcAGAUG...................... len:22 al:96
..................................................UUUGAAgAUGAUAUGCUAGAUGU..................... len:23 al:1
..................................................UUUGAgAAUGAUAUGCUAGAUGU..................... len:23 al:1
..................................................UUUGAAAAUGAUAUGCUAGAU....................... len:21 al:28
..................................................UUUGAAAAUGAUAUGCUAGAcG...................... len:22 al:9
..................................................UUUGAAAAUGAUAUGCUAGAUG...................... len:22 al:887
..................................................UUUGAAgAUGAUAUGCUAGAU....................... len:21 al:1
..................................................UUUGAAAAUGAUAUGCUA.......................... len:18 al:1
..................................................UUUGAAAAUGAUAUGCUAGAUGcA.................... len:24 al:1
..................................................UUUGAAAAUGAUAUGCcAGAU....................... len:21 al:1
..................................................UUUuAAAAUGAUAUGCUAGAUG...................... len:22 al:1
..................................................UUUGAAAAUGAUAUGCUAGAUGUu.................... len:24 al:11
..................................................UUUGAAAgUGAUAUGCUAGAUGU..................... len:23 al:3
..................................................UUUGgAAAUGAUAUGCUAGAUG...................... len:22 al:2
..................................................UUUGAAAAUGAUAUGCUAGu........................ len:20 al:1
..................................................UUUGAAAAUGAUAUGCUAGuUG...................... len:22 al:1
..................................................UUUGAAAAUGAUgUGCUAGAUG...................... len:22 al:1
..................................................UUUGAAAAcGAUAUGCUAGAUG...................... len:22 al:1
..................................................UUUGAAAAUGAUAUGCU........................... len:17 al:5
..................................................UUUGAAAAUGAUAUGCUAGAUu...................... len:22 al:42
..................................................UUUGAAAAUGAUAUGCUAGAUa...................... len:22 al:37
..................................................UUUGAAAAUGAUAUGCUAGAUGa..................... len:23 al:1
..................................................UUUGAAAAUGAUAUGCUAGAcGU..................... len:23 al:1
..................................................UUUGAAAAcGAUAUGCUAGAUGU..................... len:23 al:1
..................................................UUUGAAAAUGAUAUGCUAGgUG...................... len:22 al:1
..................................................cUUGAAAAUGAUAUGCUAGAUGU..................... len:23 al:2
..................................................UUUGAAAAUGAUAUGCUAGAUGc..................... len:23 al:41
..................................................UUUGAAAAUaAUAUGCUAGAUGU..................... len:23 al:1
..................................................aUUGAAAAUGAUAUGCUAGAUGU..................... len:23 al:1
..................................................UUUGAAAAUGAUAUGCUAGAUGU..................... len:23 al:337
..................................................UUUGAAAAUGAUAUaCUAGAUG...................... len:22 al:1
..................................................UUUGAAgAUGAUAUGCUA.......................... len:18 al:1
..................................................UUUGAAAAUGAUAcGCUAGAUGU..................... len:23 al:1
..................................................UUUGAAAAUGAUAUGCUAGuU....................... len:21 al:1
..................................................UcUGAAAAUGAUAUGCUAGAUG...................... len:22 al:1
..................................................UUUGAAAAUGAUAUGCUgGA........................ len:20 al:1
..................................................UUUGAAAAUGAUgUGCUAGAUGU..................... len:23 al:3
..................................................UUUGAAAAUGAUAUGCUAGA........................ len:20 al:30
..................................................UUUGAAAAUGAUAUGCcAG......................... len:19 al:1
..................................................UUUGAAAAUGgUAUGCUAGAUG...................... len:22 al:4
..................................................UUUGAAAAUGAUAUGCUAGAgG...................... len:22 al:1
..................................................UUUGAAAAUGAUAUGCUAGAUGUAaU.................. len:26 al:1
...................................................UUGAAAAUGAUAUGCUAGAUG...................... len:21 al:1
....................................................UGAAAAUGAUgUGCUAGAUGU..................... len:21 al:1
.............................................................UAUGCcAGAUGUACUAAAAUCGU.......... len:23 al:1
........................................................................UACUAAAAUCGUCAaCUUU... len:19 al:1
........................................................................UACUAAAAUCGUCAUCUUU... len:19 al:2