Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000001l:5548841-5548934 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_2291.ps.pdf
Locus Name: Cluster_2291
UAUCAUUACAUGUCUAGAAUUCUCAGAUUACAGUAGUUAAGUAAUUAAAUACUUAACUACUGUAAUCUGAACAUUCUAGACAUCUGUAGUUUCG
....((((((((((((((((..(((((((((((((((((((((......)))))))))))))))))))))..))))))))))..)))))).... (-48.00)
UAUCAUUACAUGUCUAGAAc.......................................................................... len:20 al:1
UAUCgUUACAUGUCUAGAAU.......................................................................... len:20 al:2
UAUCAUUACAUGUCUAGAAU.......................................................................... len:20 al:8
.AUCAUUACAUGUCUAGAAU.......................................................................... len:19 al:14
.AUCAUUACAUGUCUAGAAc.......................................................................... len:19 al:1
.AUCgUUACAUGUCUAGAAU.......................................................................... len:19 al:3
.AUCAcUACAUGUCUAGAAU.......................................................................... len:19 al:1
..UCAUUACAUGUCUAGAAU.......................................................................... len:18 al:3
..UCgUUACAUGUCUAGAAU.......................................................................... len:18 al:1
..UCAUUACAUGUCUAGAAc.......................................................................... len:18 al:1
...CAUUACAUGUCUAGAAUU......................................................................... len:18 al:2
..................AaUCUCAGAUUACAGUAGUUAAGU.................................................... len:24 al:1
...................UUCUCAGAUUACAGUAGUUAAGUAu.................................................. len:25 al:2
...................cUCUCAGAUUACAGUAGUUAAGU.................................................... len:23 al:5
...................UUCUCAGAUUACAGUAGUUAgGU.................................................... len:23 al:1
...................UUCUCAGAUUACAGUAGUUAAGUA................................................... len:24 al:6
...................cUCUCAGAUUACAGUAGUUA....................................................... len:20 al:1
...................UcCUCAGAUUACAGUAGUUAAGU.................................................... len:23 al:1
...................UUCUCAGAUUgCAGUAGUUAAGU.................................................... len:23 al:1
...................UUCUCAGAUUACAGUAGUUAAGU.................................................... len:23 al:45
...................cUCUCAGAUUACAGUAGUUAAGUA................................................... len:24 al:1
...................UUCUCAGAUUACAGUAGUUA....................................................... len:20 al:4
...................UUCUCAGAUUACAGUAGUUAAGc.................................................... len:23 al:1
...................UUCUCAGAUUACAGUAGUUAAGg.................................................... len:23 al:2
...................UUCUCAGAUUACAGUAGUUAAGUu................................................... len:24 al:1
...................aUCUCAGAUUACAGUAGUUAAGU.................................................... len:23 al:3
...................UUCUCAGAUUACAGUAGU......................................................... len:18 al:2
....................UCUCAGAUUACAGUAGUUc....................................................... len:19 al:8
....................UCUCAuAUUACAGUAGUUA....................................................... len:19 al:2
....................UCaCAGAUUACAGUAGUUA....................................................... len:19 al:3
....................UCUCAGAUUACAGUAGUUAAGUAu.................................................. len:24 al:552
....................UCUCAGAcUACAGUAGUU........................................................ len:18 al:2
....................UCUCAGAUUACAGUgGUUAAGUA................................................... len:23 al:24
....................UCUCAGAUUcCAGUAGUUA....................................................... len:19 al:1
....................UCcCAGAUUACAGUAGUUA....................................................... len:19 al:7
....................UCUCAGgUUACAGUAGUUAAG..................................................... len:21 al:2
....................UCUCAGAUUACAGUAGcUAAG..................................................... len:21 al:1
....................UCUCAGAUUACAGUAGUaAAGUA................................................... len:23 al:3
....................UCUCAGAUUACAGUAGUa........................................................ len:18 al:13
....................UCUCAGAUUACgGUAGUUAA...................................................... len:20 al:1
....................UCUCAGuUUACAGUAGUUA....................................................... len:19 al:1
....................UCUCAGAUUACAGUAGUUAAGUAAc................................................. len:25 al:1
....................UCUCAGAUUACAGcAGUUAAGUA................................................... len:23 al:19
....................UCaCAGAUUACAGUAGUUAAGU.................................................... len:22 al:11
....................UCUCAGAUUACAGUAGUUAAaUA................................................... len:23 al:7
....................UuUCAGAUUACAGUAGUUAAGUA................................................... len:23 al:4
....................UCUCAGAUUACAGUAGg......................................................... len:17 al:1
....................UuUCAGAUUACAGUAGUUA....................................................... len:19 al:1
....................UCUCAGAUUACAGUAGUUAAGgA................................................... len:23 al:8
....................UCUCAGAUUACAGUAGUUAAa..................................................... len:21 al:11
....................UCUCAGAUUACAGUAGUUAAGUAg.................................................. len:24 al:1
....................UCUCAGAUUACAGUuGUUAAGU.................................................... len:22 al:7
....................UCUCAGAUUACuGUAGUUAAGU.................................................... len:22 al:12
....................aCUCAGAUUACAGUAGUUA....................................................... len:19 al:5
....................UCUCAGAUUACAGUAGUUcAGU.................................................... len:22 al:12
....................UCUCAGAUUuCAGUAGUUAAGU.................................................... len:22 al:3
....................UCUCAGAUUACAGUgGUUAAGU.................................................... len:22 al:85
....................UCUCAGcUUACAGUAGUU........................................................ len:18 al:2
....................UCUCAGAUUgCAGUAGUUAA...................................................... len:20 al:1
....................UCUCAGAgUACAGUAGUUAAG..................................................... len:21 al:1
....................UCUCAGAUUACgGUAGUUAAGU.................................................... len:22 al:172
....................UCcCAGAUUACAGUAGUU........................................................ len:18 al:3
....................UCUaAGAUUACAGUAGUUAAGUA................................................... len:23 al:1
....................UCUCAGAUUACAGUcGUUAAGUA................................................... len:23 al:3
....................UCUCAGgUUACAGUAGUU........................................................ len:18 al:2
....................UCUCAGAUUACAGUgGUUAAG..................................................... len:21 al:3
....................UCUCAGAUUACAuUAGUUAAGU.................................................... len:22 al:2
....................UCUCAGAUUACAGUAGU......................................................... len:17 al:22
....................UCUCAGAUUACAGcAGUUAAGU.................................................... len:22 al:65
....................UCUCAGAUUACAGUAGUUAAcU.................................................... len:22 al:9
....................UCUCgGAUUACAGUAGUUAAG..................................................... len:21 al:6
....................UCUCcGAUUACAGUAGUUA....................................................... len:19 al:1
....................UCUCAGAUUACAGUgGUU........................................................ len:18 al:4
....................UCUCAGAUUAaAGUAGUUAAGUA................................................... len:23 al:8
....................UCUCAGAcUACAGUAGUUAAGUA................................................... len:23 al:18
....................UCUCAGAUUACAGUcGUUAAGU.................................................... len:22 al:13
....................UCUCAGAUUACAGUAGUUAAGg.................................................... len:22 al:164
....................UCUCAuAUUACAGUAGUUAAGUA................................................... len:23 al:1
....................UCUCAGAUUACAaUAGUUAAGUA................................................... len:23 al:9
....................UCUCAaAUUACAGUAGUUAAGU.................................................... len:22 al:15
....................UCUCAGAUUACcGUAGUUAAGU.................................................... len:22 al:28
....................aCUCAGAUUACAGUAGUUAAGU.................................................... len:22 al:26
....................UCUCAGAUaACAGUAGUUAAGUA................................................... len:23 al:1
....................UuUCAGAUUACAGUAGUUAAGU.................................................... len:22 al:15
....................UCUCAGAUUACAGUAGUUAAc..................................................... len:21 al:2
....................UCUCAGAUUACAGaAGUUAAGU.................................................... len:22 al:4
....................UCUCgGAUUACAGUAGUUAAGUA................................................... len:23 al:78
....................UCcCAGAUUACAGUAGUUAAG..................................................... len:21 al:1
....................UCUCAGAUUACAGUgGUUA....................................................... len:19 al:7
....................UCUCcGAUUACAGUAGUUAAGUA................................................... len:23 al:9
....................UCUCAGAUUACcGUAGUUAAGUA................................................... len:23 al:6
....................UCUCAGAUUACAGUAGUUA....................................................... len:19 al:3368
....................UCUCAGAUUACAGUAGgUAAGUA................................................... len:23 al:1
....................UCUCAGAUUACAGUAGUc........................................................ len:18 al:56
....................UCUCAGAUUACAGUAGcUAAGU.................................................... len:22 al:67
....................UCUCAGAUUACcGUAGUU........................................................ len:18 al:1
....................UCUCAGAUUACAGUAGUUgAGUA................................................... len:23 al:21
....................UCUCAGAUUACAGcAGUUA....................................................... len:19 al:7
....................UCUCAGAUUACAGUAGcU........................................................ len:18 al:5
....................UCUCAGAgUACAGUAGUUAAGU.................................................... len:22 al:1
....................cCUCAGAUUACAGUAGUUA....................................................... len:19 al:11
....................UCUCAGuUUACAGUAGUUAAGUA................................................... len:23 al:1
....................UCUCAuAUUACAGUAGUUAAGU.................................................... len:22 al:1
....................UCUCAGAUUACAGUAGUUAA...................................................... len:20 al:160
....................UCUCAGAUUACAGUAGcUAAGUA................................................... len:23 al:27
....................UCUCAGAUUACAGUAGUcAAGUA................................................... len:23 al:17
....................UCUCAGAUUACAGgAGUUAAGUA................................................... len:23 al:1
....................UCUCuGAUUACAGUAGUUA....................................................... len:19 al:1
....................UCUCAGAUUACAGUAGUUAAaU.................................................... len:22 al:16
....................UCUCAGAUaACAGUAGUUAAGU.................................................... len:22 al:3
....................aCUCAGAUUACAGUAGUUAAGUA................................................... len:23 al:7
....................UCUCAGgUUACAGUAGUUA....................................................... len:19 al:9
....................UCUCAGAUUACAGcAGUU........................................................ len:18 al:1
....................UCUCAGgUUACAGUAGUUAAGU.................................................... len:22 al:107
....................UCUCAGAUUACAGUAGUUgAG..................................................... len:21 al:1
....................UCUCAGAUgACAGUAGUU........................................................ len:18 al:1
....................UCUCAGAUUACuGUAGUUA....................................................... len:19 al:3
....................UCUCAGAUUAuAGUAGUUAAGU.................................................... len:22 al:33
....................UCgCAGAUUACAGUAGUUAAGUA................................................... len:23 al:1
....................UCUCAGAUUACAGUAGUUAAGUAAUUAAAUA........................................... len:31 al:1
....................UCUCAGAUUACAGUAGUUAgGU.................................................... len:22 al:155
....................UCUCAGAgUACAGUAGUUAAGUA................................................... len:23 al:1
....................UCUCAGcUUACAGUAGUUA....................................................... len:19 al:2
....................UaUCAGAUUACAGUAGUUAAGU.................................................... len:22 al:2
....................UCcCAGAUUACAGUAGUUAAGU.................................................... len:22 al:133
....................UCUCAGAUUACAGUAGaUA....................................................... len:19 al:1
....................UCUCAGAUUACAaUAGUUA....................................................... len:19 al:3
....................UCUCcGAUUACAGUAGUUAAGU.................................................... len:22 al:43
....................UCUCAGAUUACAGUAGUUAAGUuA.................................................. len:24 al:2
....................UCUCAGgUUACAGUAGUUAAGUA................................................... len:23 al:20
....................UCUCAGAUUACAGUAGUaAAGU.................................................... len:22 al:2
....................UCUCAGAUUACAGUAGgUAAGU.................................................... len:22 al:4
....................UCUCAGAUUACAGUAGUUAAGa.................................................... len:22 al:186
....................cCUCAGAUUACAGUAGUU........................................................ len:18 al:3
....................cCUCAGAUUACAGUAGUUAAGU.................................................... len:22 al:189
....................UCUCAGAcUACAGUAGUUAAG..................................................... len:21 al:2
....................UCUCAGAUUAuAGUAGUUAAG..................................................... len:21 al:1
....................UCUuAGAUUACAGUAGUUAAGUA................................................... len:23 al:1
....................UCUCAGAUUACAGUAaUUAAGUA................................................... len:23 al:1
....................UCaCAGAUUACAGUAGUUAAG..................................................... len:21 al:2
....................UCUCAGAUUACAGUAGUUAAGUAcU................................................. len:25 al:2
....................UCUCAGAUUACAGUAuUUAAGU.................................................... len:22 al:2
....................UCUCAGAUUACAGUAGUUAgGUA................................................... len:23 al:53
....................UCaCAGAUUACAGUAGUU........................................................ len:18 al:1
....................UCUCAGAUUACAGUAGUcAAGU.................................................... len:22 al:60
....................UCUCAGAUUACAGUAGUUAAGUAuU................................................. len:25 al:28
....................UCUCAaAUUACAGUAGUUAAGUA................................................... len:23 al:1
....................UCUCAGAUUACAGUA........................................................... len:15 al:2
....................UCUCAGAUUACAGUAGUUAAGUAAg................................................. len:25 al:1
....................UCUuAGAUUACAGUAGUUAAGU.................................................... len:22 al:9
....................UCUCAGAUUgCAGUAGUUA....................................................... len:19 al:18
....................UCUCAGAUUACAGUAGUUAcGU.................................................... len:22 al:13
....................UCUCuGAUUACAGUAGUUAAGU.................................................... len:22 al:10
....................UCUCAGAUUcCAGUAGUUAAGUA................................................... len:23 al:12
....................UCcCAGAUUACAGUAGUUAAGUA................................................... len:23 al:29
....................UCUCAGAUUACAGUAGUgA....................................................... len:19 al:2
....................UCUCAGcUUACAGUAGUUAAGUA................................................... len:23 al:3
....................UCUCAGAUUgCAGUAGUUAAG..................................................... len:21 al:4
....................UCUCAGAUUACAGUAGc......................................................... len:17 al:2
....................UCUCAGAUUACAGUAGUUgAGU.................................................... len:22 al:55
....................UCUCAGuUUACAGUAGUUAAGU.................................................... len:22 al:3
....................UCUCgGAUUACAGUAGUUA....................................................... len:19 al:17
....................UCUCAGAUUACAGUAGUUAAGcA................................................... len:23 al:185
....................cCUCAGAUUACAGUAGUUAAGUA................................................... len:23 al:40
....................UCUCAGAcUACAGUAGUUA....................................................... len:19 al:8
....................cCUCAGAUUACAGUAGUUAA...................................................... len:20 al:2
....................UCUCAGAUUACAGUAGUUcAGUA................................................... len:23 al:2
....................UCUCAGAUUACAGUAGUUAg...................................................... len:20 al:1
....................UCUCAGAUUACAGUAGUUAAGUAc.................................................. len:24 al:49
....................UCUCAGAUUACAGgAGUUAAGU.................................................... len:22 al:2
....................UCUCAGAUUACAGUuGUUAAGUA................................................... len:23 al:1
....................UCUCAGAUUAuAGUAGUU........................................................ len:18 al:2
....................UCUCAGAUUAaAGUAGUUAAGU.................................................... len:22 al:10
....................UCUCAGAUcACAGUAGUUAAGUA................................................... len:23 al:11
....................UCUCAGAaUACAGUAGUUAAGUA................................................... len:23 al:1
....................UCaCAGAUUACAGUAGUUAAGUA................................................... len:23 al:6
....................UCUCAGAUUACAGaAGUUAAGUA................................................... len:23 al:1
....................UCUCAGAcUACAGUAGUUAAGU.................................................... len:22 al:81
....................UCUCAGAUUACgGUAGUUAAG..................................................... len:21 al:2
....................UCUCgGAUUACAGUAGUU........................................................ len:18 al:5
....................UCUCAGAUUACAGUAGUUAAGUAgUU................................................ len:26 al:1
....................UCUCAGAUUACAGUAGUUAAGUg................................................... len:23 al:62
....................UCUCAGAUcACAGUAGUUA....................................................... len:19 al:9
....................UCUCAGAUUAuAGUAGUUA....................................................... len:19 al:3
....................UCUCAGAUUACAGUAGUUAAuU.................................................... len:22 al:3
....................UCUCAGAUUACAGUAGUU........................................................ len:18 al:958
....................UCUCAGAUUACAGUAGUUAAG..................................................... len:21 al:670
....................UCUCAGAUUACAGUAGUUAAGUu................................................... len:23 al:60
....................UCUCcGAUUACAGUAGUUAAG..................................................... len:21 al:1
....................UCUCgGAUUACAGUAGUUAAGU.................................................... len:22 al:286
....................gCUCAGAUUACAGUAGUUAAGU.................................................... len:22 al:2
....................UCUCAGAUUuCAGUAGUUAAGUA................................................... len:23 al:2
....................UCUCAGAUUACAGUAGUUAu...................................................... len:20 al:3
....................UCUuAGAUUACAGUAGUUA....................................................... len:19 al:4
....................UCUCAGAUUACAGUAGgUA....................................................... len:19 al:1
....................UCUCAGAUUgCAGUAGUUAAGU.................................................... len:22 al:125
....................UCUCAGAUcACAGUAGUUAAGU.................................................... len:22 al:44
....................UCUCAGAUUACgGUAGUU........................................................ len:18 al:2
....................UCUCAGAUUACAaUAGUUAAGU.................................................... len:22 al:24
....................UCUCAGAUUACAGUAGUUg....................................................... len:19 al:9
....................UCgCAGAUUACAGUAGUUAAGU.................................................... len:22 al:4
....................UCUCAGAUUACAGUAGUcA....................................................... len:19 al:38
....................UCUCAGAUUACAGUAGUUAAGUAA.................................................. len:24 al:24
....................UCUCAGAUUACAGUAGUUAAGUA................................................... len:23 al:10810
....................UCUCAGAUUACAGUAGcUA....................................................... len:19 al:7
....................UCUCAGgUUACAGUAGUUAAGUAA.................................................. len:24 al:1
....................UCUCAGAUUACAGUAGUUAuGU.................................................... len:22 al:14
....................UCUCAGAUUAuAGUAGUUAAGUA................................................... len:23 al:5
....................UCUCAGAUcACAGUAGUUAAG..................................................... len:21 al:3
....................UCUCAGAUUACAGUAGUUAAGc.................................................... len:22 al:3343
....................UCUCAGAUUACAGUAGUUAuGUA................................................... len:23 al:7
....................UCUCAGAUUACAGUAGUUuAGUA................................................... len:23 al:1
....................UCUCAGAUUACgGUAGUUAAGUA................................................... len:23 al:40
....................UCUCAGAUUACAGUAGUUAcGUA................................................... len:23 al:8
....................UCUCAGcUUACAGUAGUUAAGU.................................................... len:22 al:29
....................UCUCAGAgUACAGUAGUUA....................................................... len:19 al:2
....................UCUCAGAUUgCAGUAGUU........................................................ len:18 al:5
....................UCUCAGAUUACAGUAGgU........................................................ len:18 al:2
....................UCUCAGAUUACAGUAGUg........................................................ len:18 al:4
....................UCUCuGAUUACAGUAGUUAAGUA................................................... len:23 al:4
....................UCUCAGAUUACAGUAGUUAAGUc................................................... len:23 al:9
....................UCUCAGAUUACAGUuGUUA....................................................... len:19 al:1
....................UCUCAGAUUACAGUAGUUAuG..................................................... len:21 al:2
....................UCUCAGAUUACAGUAcUUAAGU.................................................... len:22 al:1
....................UCcCAGAUUACAGUAGUUAA...................................................... len:20 al:1
....................UCUCAGAUUACAGUAGUUuAGU.................................................... len:22 al:5
....................UCUCAGAUUACgGUAGUUA....................................................... len:19 al:6
....................UCUCAGAUUACAGUcGUUAA...................................................... len:20 al:1
....................UCUCAGAUUACAGUAGUUAAGU.................................................... len:22 al:41195
....................UCUCAGAaUACAGUAGUUAAGU.................................................... len:22 al:4
....................UCUCAGAUUACAGUAGaUAAGU.................................................... len:22 al:4
....................UCUCAGAUUACAGUAGUUAgG..................................................... len:21 al:1
....................UCUCAGAUcACAGUAGUU........................................................ len:18 al:3
....................UCUCAGAUUgCAGUAGUUAAGUA................................................... len:23 al:43
....................UCUCAGAUUcCAGUAGUUAAGU.................................................... len:22 al:27
....................UCUCAGAUUACAGUAGUUAAuUA................................................... len:23 al:2
....................UCUCAGAUUACAGUAaUUAAGU.................................................... len:22 al:19
....................UCUCAGAUUACAGUAGUUu....................................................... len:19 al:24
.....................CUCAGAUUACAGUAGUcAAGUA................................................... len:22 al:1
.....................CUCAGAUUACAGUAGUUAAGU.................................................... len:21 al:1653
.....................CUCgGAUUACAGUAGUUAAG..................................................... len:20 al:1
.....................CUCAGAUUACAGUAGUUgAGU.................................................... len:21 al:3
.....................CUCAGAUUACgGUAGUUAAGU.................................................... len:21 al:6
.....................CUCAGAUUACAGUAGUUA....................................................... len:18 al:106
.....................CUCAGAUUACAGUAGUUAAGa.................................................... len:21 al:9
.....................CUCAGAUUcCAGUAGUUAAGUA................................................... len:22 al:1
.....................CUCAGAUUACAGUcGUUAAGU.................................................... len:21 al:3
.....................CUCAGAUUAaAGUAGUUAAGU.................................................... len:21 al:1
.....................CUCAGAUUACAGUAGcUA....................................................... len:18 al:1
.....................CUCAGAUUACAGUAGUUAAG..................................................... len:20 al:11
.....................CUCAGAcUACAGUAGUUAAGU.................................................... len:21 al:2
.....................CUCAGAUUACAGUAGUUAAGUAuU................................................. len:24 al:5
.....................CUCAGAUUACAGUgGUUAAGU.................................................... len:21 al:4
.....................CUCAGAUUACAGUAGUUAgG..................................................... len:20 al:1
.....................CUCgGAUUACAGUAGUUAAGU.................................................... len:21 al:13
.....................CUCAGgUUACAGUAGUUAAGUA................................................... len:22 al:1
.....................CUCAGAUUACAGUAGUU........................................................ len:17 al:2
.....................CUCAGAUUACAGUAGUUAAGg.................................................... len:21 al:7
.....................CUCcGAUUACAGUAGUUAAGU.................................................... len:21 al:4
.....................CUCgGAUUACAGUAGUUAAGUA................................................... len:22 al:2
.....................CUaAGAUUACAGUAGUUAAGU.................................................... len:21 al:1
.....................CUCAGAUUACAGUAGUUAAGUA................................................... len:22 al:348
.....................CUCAGAUUACgGUAGUUA....................................................... len:18 al:2
.....................CUCAGAUUACuGUAGUUAAGU.................................................... len:21 al:2
.....................CcCAGAUUACAGUAGUUAAGU.................................................... len:21 al:7
.....................CUCAGAUUACAGUgGUUAAGUA................................................... len:22 al:1
.....................CUCAGAUUAuAGUAGUUAAGU.................................................... len:21 al:1
.....................CUCAGAUUACAGUAGcUAAG..................................................... len:20 al:1
.....................CUCAGAUUACAGUAGUUAAGUAc.................................................. len:23 al:6
.....................CUCAGAUUACAGUAGUUAAGcA................................................... len:22 al:10
.....................CUCAGAUUACAGUAGU......................................................... len:16 al:1
.....................CUCAGAUUACgGUAGUU........................................................ len:17 al:1
.....................CUCAGAUUACAGUAGUcA....................................................... len:18 al:1
.....................CUCAGAUUACAGUAGUUAgGU.................................................... len:21 al:9
.....................CUCAGAUUACAGUAGUUAAGUg................................................... len:22 al:1
.....................CUCAGcUUACAGUAGUUAAGU.................................................... len:21 al:1
.....................CUCAGAUUACAGUAGaUAAGU.................................................... len:21 al:1
.....................CcCAGAUUACAGUAGUUAAGUA................................................... len:22 al:1
.....................CUCAcAUUACAGUAGUUAAGU.................................................... len:21 al:1
.....................CUCAGAUUACAGUAGUUAAGUAA.................................................. len:23 al:2
.....................CUCAGAUUACAGUAGUc........................................................ len:17 al:1
.....................CUCAGAUUACAGUAGcUAAGUA................................................... len:22 al:2
.....................CUCAGAUUACgGUAGUUAAGUA................................................... len:22 al:2
.....................CUCAGAUUACAGcAGUUAAGUA................................................... len:22 al:1
.....................CUCAGAUUACAGUAGUUAu...................................................... len:19 al:2
.....................CUCAGAUUACAGUAGUUAAGUu................................................... len:22 al:6
.....................CUCAGAUUACAGUAGUUAA...................................................... len:19 al:7
.....................CUCAGAUUgCAGUAGUUAAGU.................................................... len:21 al:3
.....................CUCAGAUUACAGUAGUUAAGUAu.................................................. len:23 al:42
.....................CUCAGAUcACAGUAGUUAAGU.................................................... len:21 al:3
.....................CUCAGAUUgCAGUAGUUA....................................................... len:18 al:1
.....................CUCAGAUUACAGcAGUUAAGU.................................................... len:21 al:1
.....................CUCAGAcUACAGUAGUUAAGUA................................................... len:22 al:1
.....................CUCAGAUUACAGUAGUcAAGU.................................................... len:21 al:2
.....................CUCAGAUUcCAGUAGUUAAGU.................................................... len:21 al:1
.....................CUCAGAUUACAGUAGUUAAGUc................................................... len:22 al:2
.....................CUCAGAUUACAGUAGUUAAGc.................................................... len:21 al:134
.....................CUCAGAUUACAGUAGcUAAGU.................................................... len:21 al:3
.....................CUCAGAUUACAGUAGUUcAGU.................................................... len:21 al:2
.....................CUCAGgUUACAGUAGUUAAGU.................................................... len:21 al:1
.....................CUCAGAUUACAGUAGUUgAGUA................................................... len:22 al:1
.....................CaCAGAUUACAGUAGUUA....................................................... len:18 al:1
......................UCAGAUUACAGUAGUUA....................................................... len:17 al:2
......................UCAGAUUACAGUAGUUAAGcA................................................... len:21 al:1
......................UCAGAUUACAGUAGUUAAGU.................................................... len:20 al:45
......................UCAGAUUACAGUAGUUAAGc.................................................... len:20 al:4
......................UCAGAUUACAuUAGUUAAGU.................................................... len:20 al:1
......................UCAGAUUACAGUAGUUAAG..................................................... len:19 al:1
......................UCgGAUUACAGUAGUUAAGU.................................................... len:20 al:1
......................UCAGAUUACAGUAGUUAAGUA................................................... len:21 al:15
.......................CAGAUUACAGUAGUUAAGUA................................................... len:20 al:26
.......................CAGAUUACAGUAGUUAgGU.................................................... len:19 al:1
.......................CAGAUUACAGUcGUUAAGU.................................................... len:19 al:1
.......................CAGAUUACAGUAGUUAAGU.................................................... len:19 al:25
.......................CAGAUUACAGUAGUUAAGc.................................................... len:19 al:2
.......................CAGAUUACAGUAGUUAAGcA................................................... len:20 al:1
........................AGAUUACAGUAGUUAAGUA................................................... len:19 al:2
........................AGAUUACAGUAGUUAAGU.................................................... len:18 al:2
............................UACAGUAGUUAAGUAAUU................................................ len:18 al:1
..........................................AAUUAAAUACUUAACUACUGUAAUCU.......................... len:26 al:2
..........................................AAUUAAAUACUUAACUACUGUAAUCUGAACA..................... len:31 al:1
..........................................AAUUAAAUACUUAACUACUG................................ len:20 al:2
...........................................AUUAAAUACUUAACUACUGUAAUCUaAACAU.................... len:31 al:1
...........................................AUUAAAUACUUAACUACUGUAAUC........................... len:24 al:1
...........................................AUUAAAUACUUAACUACUGUAAUCUGAACA..................... len:30 al:2
...........................................AUUAAAUACUUAACUACUGUAAUaUGAACA..................... len:30 al:1
...........................................AUUAAAUACUUAACUACUGUAAUaUGAACAU.................... len:31 al:7
...........................................AUUAAAUACcUAACUACUGUAAUCUGAACAU.................... len:31 al:1
...........................................AUUAAgUACUUAACUACUGUAAUCUGAACAU.................... len:31 al:2
...........................................AUUAAAUACUUAACUACUGUAAUCUGAACAc.................... len:31 al:2
...........................................AUUAAAUACUUAACUACUGUAAUCUGAACAU.................... len:31 al:32
............................................UUAAAUACUUAACUACUGUAAUaUGAACAUU................... len:31 al:1
............................................UUAAAUACUUAACUACUGUAAUCUGAACAU.................... len:30 al:2
............................................UUAAAUACUUAACUACUGUAAUaUGAACAU.................... len:30 al:2
.............................................UAAAUACUUAACUACUGUAAUCUGAACAU.................... len:29 al:1
..................................................ACUUAACUACUGUAAUCUGAACA..................... len:23 al:2
..................................................ACUUAACUACUGUAAUCUGAACAU.................... len:24 al:1
...................................................CUUAACUACUGUAAUaUGAAC...................... len:21 al:7
...................................................CUUAACUACUGUAAUCUGAACAUa................... len:24 al:98
...................................................CUUAACUACUGUAAUCUGgACAUU................... len:24 al:2
...................................................CUUAgCUACUGUAAUCUGAACAU.................... len:23 al:2
...................................................CUUAACUACUGUAAUCUGu........................ len:19 al:1
...................................................CUUAACUACUGUAAUCUGgACAU.................... len:23 al:1
...................................................CUUAACUACUGUAgUCUGAACAU.................... len:23 al:3
...................................................CUUAACcACUGUAAUCUGAACAU.................... len:23 al:2
...................................................CUUAgCUACUGUAAUCUGAACAUU................... len:24 al:1
...................................................CUUAACUACUGUAAUCUGAAu...................... len:21 al:1
...................................................CUUAACUAaUGUAAUCUGAACA..................... len:22 al:2
...................................................CUUAACUACUGUAAUCUa......................... len:18 al:2
...................................................CUUAACUACUGcAAUCUGAAC...................... len:21 al:1
...................................................CUUAACUACUGUAAgCUGAACAU.................... len:23 al:1
...................................................CUUAAuUACUGUAAUCUGAACA..................... len:22 al:1
...................................................CUUAACUACUGUAAUCcGAACA..................... len:22 al:1
...................................................CUUAACUACUGUAAUCUGAACAUUaU................. len:26 al:1
...................................................CUcAACUACUGUAAUCUGAACAU.................... len:23 al:2
...................................................CUUAACUACUGUAAUCUGAACAc.................... len:23 al:35
...................................................CUUAACUACUGUAAUCUGAACAg.................... len:23 al:2
...................................................CUUAACcACUGUAAUCUGA........................ len:19 al:1
...................................................CUUgACUACUGUAAUCUGAACA..................... len:22 al:3
...................................................CUUAACUACUGUAAUCUGAACg..................... len:22 al:4
...................................................CUUAACUACUGUAAUCUGAAuA..................... len:22 al:1
...................................................CUUAACUACUGUgAUCUGAACA..................... len:22 al:1
...................................................CUUAgCUACUGUAAUCUGAACA..................... len:22 al:4
...................................................CUUAACUACUGUAAUaUGAACAUU................... len:24 al:178
...................................................CUUAACUACUGUAAUCcGAACAU.................... len:23 al:1
...................................................CUUAACUACUGUAAUCUGAcCAU.................... len:23 al:1
...................................................CUUAcCUACUGUAAUCUGAACA..................... len:22 al:1
...................................................CUUAACUACUGUAAUCUGAACAUU................... len:24 al:245
...................................................CUUAACUACUGUAAUCUGAACgU.................... len:23 al:2
...................................................CUUAACUACUGUAgUCUGAACAUU................... len:24 al:1
...................................................CgUAACUACUGUAAUCUGAACAU.................... len:23 al:2
...................................................CUUAACUACUGUAAUCUGA........................ len:19 al:2
...................................................CUUAACUACUGUAAUCUGgACA..................... len:22 al:2
...................................................CUUAACUACUGUAAUCUGAACAUUaUA................ len:27 al:1
...................................................CUUAACUACUGUAAUCUGAACAUUu.................. len:25 al:18
...................................................CUUAACUACUGUAAUaUGAACAU.................... len:23 al:152
...................................................CUUAACUACUGUAAUCUGAACAgU................... len:24 al:2
...................................................CUUAACUACUGcAAUCUG......................... len:18 al:1
...................................................CUUAACUACUGcAAUCUGAACA..................... len:22 al:2
...................................................CUUAACUACUGUAAUCUGAACAUc................... len:24 al:12
...................................................CUUgACUACUGUAAUCUGAACAU.................... len:23 al:2
...................................................uUUAACUACUGUAAUCUGAACAU.................... len:23 al:1
...................................................CUUAACUACUGcAAUCUGAACAU.................... len:23 al:4
...................................................CUUAACUACUGUAAUCUGAAC...................... len:21 al:20
...................................................CUUAACUACUGUAAUCU.......................... len:17 al:1
...................................................CUUAACUACUGUAAUCUGAuCAU.................... len:23 al:1
...................................................CUUAACUACUGUAAUCUGAACAUUC.................. len:25 al:1
...................................................CUUAACUACUGUAAUCaGAACA..................... len:22 al:1
...................................................CUUAACUACUGUAAUCUGAACAUUuU................. len:26 al:1
...................................................CUUAACUgCUGUAAUCUGAACAU.................... len:23 al:4
...................................................CUUcACUACUGUAAUCUGAACAU.................... len:23 al:1
...................................................CUUAACUACUGUAAUCUGAACu..................... len:22 al:7
...................................................CUcAACUACUGUAAUCUGAACAUU................... len:24 al:2
...................................................CUUAACUACUGUAAUCUGAACAUUa.................. len:25 al:5
...................................................CUUAACUACUGUAAUCUG......................... len:18 al:49
...................................................CUUAACUACUGUAAUCUGAgCAU.................... len:23 al:2
...................................................CUUAACUACUGUAAUCUGAACAU.................... len:23 al:561
...................................................CUUAACUACUGUAAUCUGAACA..................... len:22 al:411
...................................................CUUAACUACUGUAAUCUGAACAa.................... len:23 al:10
...................................................CUUAACUACUGUAAUCUGAgCA..................... len:22 al:1
...................................................CUUAACUACUGUAcUCUGAACAU.................... len:23 al:1
...................................................CUcAACUACUGUAAUCUGAACA..................... len:22 al:1
...................................................CcUAACUACUGUAAUCUGAACAU.................... len:23 al:1
...................................................CUUAACUACUGUAAUCUGAA....................... len:20 al:5
...................................................CUUAACUACUGUgAUCUGAACAU.................... len:23 al:1
...................................................CUUAACUACUGUAAUaUGAACA..................... len:22 al:167
...................................................CUUAACUACaGUAAUCUGAACA..................... len:22 al:1
...................................................CUUAACUgCUGUAAUCUGAACA..................... len:22 al:6
....................................................UUAACUACUGUAAUCUGAACAUUaUA................ len:26 al:1
....................................................UUAACUACUaUAAUCUGAA....................... len:19 al:1
....................................................UUAACUACUGUgAUCUGAACAU.................... len:22 al:2
....................................................UUAACUACUGUAAUCUGgACA..................... len:21 al:1
....................................................UUAACUgCUGUAAUCUGAACAU.................... len:22 al:3
....................................................cUAACUACUGUAAUCUGAACAU.................... len:22 al:1
....................................................UUAACUACUGUAAUCUGAACAU.................... len:22 al:212
....................................................UUAACUACUGUAAUCUGAA....................... len:19 al:33
....................................................UUAACUACUGUAAUCUGAACAUUC.................. len:24 al:1
....................................................UUAACUACUGUAAUCUGAACAg.................... len:22 al:1
....................................................UUAACUACUGUAAcCUGAACAU.................... len:22 al:2
....................................................UUAACUACUGUAAUCUGgACAU.................... len:22 al:2
....................................................UUAACUACUGUAAcCUGAACA..................... len:21 al:1
....................................................UUAACUACUGUAAUCUGgACAUU................... len:23 al:1
....................................................UUAACUACcGUAAUCUGAACA..................... len:21 al:1
....................................................UUAACUACUGUAAUCcGAACAUU................... len:23 al:1
....................................................UUAACUACUGUAAUCUGAAC...................... len:20 al:12
....................................................UUAACUACUGUAAUaUGAACAU.................... len:22 al:31
....................................................UUAACUACUGUAAUCUGAACA..................... len:21 al:87
....................................................UUAACUACUGcAAUCUGAACA..................... len:21 al:1
....................................................UUAACUACUGUAAUaUGAACAUU................... len:23 al:36
....................................................UUAACUACUGUAAUCUGAACAUUu.................. len:24 al:4
....................................................UUAACUACUGUAAUaUGAAC...................... len:20 al:5
....................................................gUAACUACUGUAAUCUGAACA..................... len:21 al:1
....................................................UUAACUcCUGUAAUCUGAACAU.................... len:22 al:1
....................................................UUAACUACUGUAAUCUGAACAgU................... len:23 al:1
....................................................UUAACUACUGUAAUCUGAACAUc................... len:23 al:2
....................................................UUAACUgCUGUAAUCUGAACAUU................... len:23 al:1
....................................................UUAACUACUGUAAUCU.......................... len:16 al:1
....................................................UUAgCUACUGUAAUCUGAACAU.................... len:22 al:1
....................................................UUAACUACUGUAAUCUG......................... len:17 al:1
....................................................UUAACUACUGUAAUCUGAgCAUU................... len:23 al:1
....................................................UUAACUACcGUAAUCUGA........................ len:18 al:1
....................................................UUAACUACUGUAAUCUGAACAUUuU................. len:25 al:1
....................................................UUAACUACcGUAAUCUGAA....................... len:19 al:2
....................................................UUAACUACUGUAAUCUGA........................ len:18 al:12
....................................................UUAACUACUGUAAUCUGAACgU.................... len:22 al:2
....................................................UUAACUACUGUAAUCUGAACAUUa.................. len:24 al:2
....................................................UUAACUACUGUAAUCUGAACAc.................... len:22 al:15
....................................................UUAACUACUGUAAUCUGAACAUU................... len:23 al:88
....................................................UUAACUACUGUAAUCUGAACAUa................... len:23 al:34
....................................................UUAACUACUGUAAUaUGAACA..................... len:21 al:38
....................................................UUAACUACUGUAAUCUGAACAa.................... len:22 al:1
.....................................................UAACUACUGUAAUCUGAACAU.................... len:21 al:3
.....................................................UAACUACUGUAAUCUGAACAc.................... len:21 al:1
.....................................................UAACUACUGUAAUCUGAACA..................... len:20 al:3
......................................................AACUACUGUAAUCUGAACAUg................... len:21 al:1
......................................................AACUACUGUAAUCUGAACAU.................... len:20 al:1
......................................................AACUACUGUAAUCUGAACAUUCU................. len:23 al:1
.......................................................ACUACUGUAAUCUGAACA..................... len:18 al:1
.......................................................ACUACUGUAAUaUGAACAUU................... len:20 al:1
........................................................CUACUGUAAUCUGAgCAUUCUAGACAUCU......... len:29 al:1
........................................................CUACUGUAAUCUGAACAUUaU................. len:21 al:1
.........................................................UACUGUAAUCUGAACAUUCUAGACAUCU......... len:28 al:3
..........................................................................UCUAGACAUCUGUAGUUUCG len:20 al:1
..........................................................................UCUAGACAUCUGUAGUUU.. len:18 al:6