Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ntLink_6:13353907-13353997 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_1883.ps.pdf
Locus Name: Cluster_1883
UUAUUUGACAUCUUGGAUAGCGGGGUCUUUAGCCGCAAUAUUUAUGAUACUGCAGCUAAAUACUCCGCUGCGCAAAAUGCCAGCUUGAAGG
....(((.(((.(((..(((((((((.((((((.(((.((((...)))).))).)))))).)))))))))..))).))).)))........ (-31.50)
UUAUUUGACAUCUUGGAU......................................................................... len:18 al:14
.................UAGCGGGGUCUUUAGCCGCAAU.................................................... len:22 al:1
.................UAGCGGGGUCUUUAGCCa........................................................ len:18 al:1
..................AGCGGGGUCUUUAGCCGCAAUAUU................................................. len:24 al:1
..................AGCGGGGUCUUUAGC.......................................................... len:15 al:1
..................AGCGGGGUCUUUAGCCG........................................................ len:17 al:1
..................AGCGGGGUCUUUAGCC......................................................... len:16 al:3
..................AGCGGGGUCUUUAGCCGCAAU.................................................... len:21 al:1
..................AGCGGGGUCUUUAGCCGC....................................................... len:18 al:1
..................AGCGGGGUCUUUAGCCa........................................................ len:17 al:1
....................CGGGGUCUUUAGCCGCAAUA................................................... len:20 al:1
....................CGGGGUCUUgAGCCGCAAUAUUUAUGAUACU........................................ len:31 al:1
....................CGGGGUCUUUAGCCGCAAUAUaU................................................ len:23 al:1
....................CGGGGUCUUUAGCCGCAAUAU.................................................. len:21 al:3
.........................UCUUUAGCCGCAAUAUUUA............................................... len:19 al:1
.........................UCUUUAGCCGCAAUAUUUAUGAUACUGCAG.................................... len:30 al:1
.........................UCUUUAGCCGCAAUAUUU................................................ len:18 al:1
.........................UCUUUAGCCGCAAUAUUUAUGAUAC......................................... len:25 al:1
.........................UCUUUAGCCGCAAUAUUUAUGAUA.......................................... len:24 al:2
.........................UCUUUAGCCGCAAUAUUUAUGA............................................ len:22 al:3
.........................UCUUUAGCCGCAAUAUUUAUG............................................. len:21 al:1
.........................UCUUUAGCCGCAAUAUUUAUGAU........................................... len:23 al:1
.........................UCUUUAGCCGCAgUAUUUAUGA............................................ len:22 al:2
.........................UCUUUAGCCGCAAUAUUUAUGAUACU........................................ len:26 al:1
.........................UCUUUAGCCGCAAUAUUUAUGAUACUG....................................... len:27 al:1
.......................................AUUUAUGAUACUGCAGCUAAAU.............................. len:22 al:2
.......................................AUUUAUGAUACUGCAGCU.................................. len:18 al:1
.......................................AUUUAUaAUACUGCAGCUAAAUACUCCGC....................... len:29 al:1
.......................................AUUUAUGAUACUGCAGCUAAAUACUCCGC....................... len:29 al:1
........................................UUUAUGAUACUGCAGCUAAAUACUCCGCUGC.................... len:31 al:4
........................................UUUAUGAUACUGCAGCUAAAUACUCCGC....................... len:28 al:2
........................................UUUAUGAUACUGCAGCUAAAUACUC.......................... len:25 al:1
........................................UUUAUGAUACUGCAGCUAAAUACU........................... len:24 al:1
........................................UUUAUGAUACUGCAGCUAAAUACUCCGu....................... len:28 al:1
........................................UUUAUGAUACUGCAGCUAAAUACUCCGCU...................... len:29 al:2
.........................................UUAUGAUACUGCAGCUAAAcACUCCGCUGC.................... len:30 al:1
.........................................UUAUGAUACUGuAGCUAAAUACUCCGCUGC.................... len:30 al:1
.........................................UUAUGAUACUGCAGCUAAAUACUCCGCUGC.................... len:30 al:9
.........................................UUAUGAUACUGCAGCUAAAUACUCCGCUGu.................... len:30 al:5
.........................................UUAUGAUACUGCAGCUAAAUACUCCGCU...................... len:28 al:1
.........................................UUAUGAUACUGCgGCUAAAUACUCCGC....................... len:27 al:2
.........................................UUAUGAUACUGCAGCUAAAUACU........................... len:23 al:1
.........................................UUAUGAUACUGCAGCUAAAUACUCCGCgGC.................... len:30 al:1
.........................................UUAUGAUACUGCgGCUAAAUACUCCGCUGC.................... len:30 al:1
.........................................UUAUGAUACUGCAGCUAAAUACUCCGCUGa.................... len:30 al:1
.............................................GAUACUGCAGCUAAAUACUCCGC....................... len:23 al:1
.............................................GAUACUGCAGCUAAAUACUCCa........................ len:22 al:1
.............................................GAUACUGCAGCUAAAUACUCC......................... len:21 al:1
...............................................cACUGCAGCUAAAUACUCCGCU...................... len:22 al:2
...............................................UACUGCAGCUAAAUACUCCGu....................... len:21 al:2
...............................................aACUGCAGCUAAAUACUCCGC....................... len:21 al:1
...............................................cACUGCAGCUAAAUACUCCGC....................... len:21 al:1
...............................................UACUGCAGCUAAAUACUCCGC....................... len:21 al:3
...............................................UACUGCAGCUAAAUACcCCGC....................... len:21 al:1
...............................................aACUGCAGCUAAAUACUCCGCUGC.................... len:24 al:1
...............................................UACUGCAGCUAAAUACUCCGCU...................... len:22 al:1
...............................................cACUGCAGCUAAAUACUCCGCUGC.................... len:24 al:1
................................................ACUGCgGCUAAAUACUCCGCUGC.................... len:23 al:48
................................................ACUGuAGCUAAAUACUCCGCUGC.................... len:23 al:5
................................................gCUGCAGCUAAAUACUCC......................... len:18 al:1
................................................ACUaCAGCUAAAUACUCCGCUGC.................... len:23 al:2
................................................cCUGCAGCUAAAUACUCCGC....................... len:20 al:5
................................................ACUGCAGCUAAAUACUCCGa....................... len:20 al:273
................................................ACUGCcGCUAAAUACUCCGCUGC.................... len:23 al:1
................................................ACUGCAGCUAAAUACUCCGCg...................... len:21 al:10
................................................cCUGCAGCUAAAUACUCCG........................ len:19 al:2
................................................ACUGCAGCUAAgUACUCCGC....................... len:20 al:22
................................................ACcGCAGCUAAAUACUCC......................... len:18 al:1
................................................ACUGCAGCUAAAUuCUCCGCUGC.................... len:23 al:1
................................................ACUGCAGCUAAAUACUCCGCaGC.................... len:23 al:2
................................................ACUGCAGCUcAAUACUCCGC....................... len:20 al:2
................................................ACUGCAGCUgAAUACUCCGCUGC.................... len:23 al:3
................................................ACUGCAGCUAAAUACUCCGCUGC.................... len:23 al:1011
................................................ACUGCAGCUAAAcACUCCGCUGC.................... len:23 al:2
................................................ACUGCAGCUAcAUACUCCGC....................... len:20 al:3
................................................ACUGCAGCUAAAUACUCCGCUGu.................... len:23 al:165
................................................ACUGCAGCUAAAUACUCCGuUGC.................... len:23 al:3
................................................ACUGCAGuUAAAUACUCCGC....................... len:20 al:3
................................................ACUGCAGCUcAAUACUCCGCU...................... len:21 al:1
................................................ACUGCAGCUAAAUACcCCGCU...................... len:21 al:1
................................................ACUGCAaCUAAAUACUCCGC....................... len:20 al:12
................................................ACUGCAGCUAAAUACUCuGCUGC.................... len:23 al:3
................................................ACUGCAGCUAAAUACUCCGuU...................... len:21 al:2
................................................ACUGCAGCUAgAUACUCCGC....................... len:20 al:24
................................................ACcGCAGCUAAAUACUCCGCUGC.................... len:23 al:4
................................................ACUGCuGCUAAAUACUCC......................... len:18 al:1
................................................ACUGCAGCUAAAUACUCCGCUa..................... len:22 al:7
................................................ACUGCAGCUAAAUACUCCGCUGa.................... len:23 al:40
................................................ACUGaAGCUAAAUACUCCGCU...................... len:21 al:1
................................................ACaGCAGCUAAAUACUCCGC....................... len:20 al:2
................................................ACUGCAGCUAAAUACUCCGCc...................... len:21 al:78
................................................ACUGCAGCUAAAUACUCCGCUaC.................... len:23 al:3
................................................ACUGCgGCUAAAUACUCC......................... len:18 al:40
................................................ACUGCAuCUAAAUACUCCGC....................... len:20 al:5
................................................gCUGCAGCUAAAUACUCCGCU...................... len:21 al:1
................................................ACUGCAGCUAAAUACUCCc........................ len:19 al:2
................................................ACUGCAGCUAAAUgCUCCG........................ len:19 al:1
................................................ACcGCAGCUAAAUACUCCGCU...................... len:21 al:1
................................................ACUGCAGCUAAAUACcCCGC....................... len:20 al:24
................................................ACUcCAGCUAAAUACUCCGCUGC.................... len:23 al:2
................................................ACUGCAGCUAAAUACUCCuC....................... len:20 al:5
................................................ACUGCAGCUAAAUACUCCGg....................... len:20 al:11
................................................ACUGCAGCUAAAUACcCCGCUGC.................... len:23 al:4
................................................ACUGCAGCUgAAUACUCCGCU...................... len:21 al:2
................................................ACUGuAGCUAAAUACUCCGC....................... len:20 al:9
................................................ACUGCgGCUAAAUACUCCG........................ len:19 al:32
................................................ACUGCAGaUAAAUACUCCGC....................... len:20 al:3
................................................ACUGCAGCUAAAUACUCCG........................ len:19 al:69
................................................ACUGCgGCUAAAUACU........................... len:16 al:1
................................................ACUGCAGCUAAcUACUCCGC....................... len:20 al:3
................................................ACUGCAGCUAgAUACUCCGCU...................... len:21 al:1
................................................uCUGCAGCUAAAUACUCCGCUGC.................... len:23 al:1
................................................ACcGCAGCUAAAUACUCCGC....................... len:20 al:24
................................................ACUGCAGCUAAAUACUCCGCcGC.................... len:23 al:6
................................................ACUGCAGCUAAAUACUCCaC....................... len:20 al:21
................................................ACUGCAGCUAAAUcCUCCGC....................... len:20 al:4
................................................ACUGCAGCUAAAUACcCCG........................ len:19 al:1
................................................ACUGCAGCUAAAUACUCa......................... len:18 al:4
................................................ACUGCAGCUAAAUACUCCGCa...................... len:21 al:29
................................................ACUGCAGCUAAAUACUCCGu....................... len:20 al:1247
................................................ACUGCAGCcAAAUACUCCGC....................... len:20 al:13
................................................ACUGCAGCUAAAcACUCCGC....................... len:20 al:15
................................................ACUGCAGCUAAgUACUCC......................... len:18 al:1
................................................ACUGCAGCUAAAUACUCuGC....................... len:20 al:7
................................................ACUGCAGCUAAAUgCUCCGC....................... len:20 al:6
................................................ACUGCAGCUAAAUACUCCGC....................... len:20 al:7251
................................................AgUGCAGCUAAAUACUCCGCUGC.................... len:23 al:1
................................................ACUGCcGCUAAAUACUCCGC....................... len:20 al:5
................................................ACaGCAGCUAAAUACUCCGCUGC.................... len:23 al:1
................................................ACUGCuGCUAAAUACUCCGC....................... len:20 al:2
................................................ACUGCAGCUAAAUACUCCGCUu..................... len:22 al:10
................................................ACUGCAGCUAAAUACaCCGCUGC.................... len:23 al:1
................................................ACUGCAGCUAAAUACUCCGCUG..................... len:22 al:39
................................................gCUGCAGCUAAAUACUCCG........................ len:19 al:1
................................................ACUGCgGCUAAAUACUCCGCU...................... len:21 al:1
................................................AuUGCAGCUAAAUACUCCGC....................... len:20 al:11
................................................ACUGCAGCUAAAUACcCC......................... len:18 al:1
................................................ACUGCAGCUAuAUACUCCGC....................... len:20 al:4
................................................ACUGCAcCUAAAUACUCCGC....................... len:20 al:1
................................................gCUGCAGCUAAAUACUCCGC....................... len:20 al:42
................................................ACUGCAGCUAAAUACUCC......................... len:18 al:106
................................................ACUGCAGCUAAAUACUCCGCUGCa................... len:24 al:1
................................................ACUGCAGCUAAAUACUCCaCU...................... len:21 al:2
................................................ACUGCAGCUAgAUACUCCGCUGC.................... len:23 al:1
................................................ACUGCAGCUAAAUACUCCcC....................... len:20 al:15
................................................ACUGCuGCUAAAUACUCCGCUGC.................... len:23 al:1
................................................ACUGCAGCUgAAUACUCC......................... len:18 al:2
................................................uCUGCAGCUAAAUACUCCGCUG..................... len:22 al:1
................................................ACUGCgGCUAAAUACUCCGC....................... len:20 al:79
................................................ACUGCAGCUAAAUACUCCa........................ len:19 al:10
................................................ACUGCAGCUAAAUACUCaGCUGC.................... len:23 al:1
................................................ACUGCAGCUAAAUACUCCGCUGg.................... len:23 al:1
................................................ACUGCAGCUAcAUACUCCGCUGC.................... len:23 al:3
................................................uCUGCAGCUAAAUACUCCGC....................... len:20 al:5
................................................ACUGCAGCUAAAUACUCg......................... len:18 al:1
................................................ACUGCAGCUAAAUACUC.......................... len:17 al:4
................................................ACUGCAGCUAAAUACaCCGC....................... len:20 al:1
................................................ACUGCAaCUAAAUACUCCGCUGC.................... len:23 al:4
................................................ACUGCAGCUAAAUACUCCGCUuC.................... len:23 al:1
................................................ACUGCAGCUAAAUACUCgGCUGC.................... len:23 al:1
................................................gCUGCAGCUAAAUACUCCGCUGC.................... len:23 al:5
................................................AuUGCAGCUAAAUACUCCGCU...................... len:21 al:1
................................................ACUGCAGCUAAAUACUCu......................... len:18 al:14
................................................ACUGCAGCUAAAUACUuCGC....................... len:20 al:4
................................................ACUGCAGCUAAAUAuUCCGC....................... len:20 al:2
................................................ACUGCAGCUAAgUACUCCGCUGC.................... len:23 al:5
................................................ACUGCAGCUAAAUACUCaGC....................... len:20 al:2
................................................ACgGCAGCUAAAUACUCCGC....................... len:20 al:2
................................................ACUGCAGCUAAAUAuUCCGCUGC.................... len:23 al:2
................................................ACUGCAGCUAAAaACUCCGC....................... len:20 al:1
................................................AuUGCAGCUAAAUACUCCGCUGC.................... len:23 al:2
................................................ACUGCAGCUgAAUACUCCGC....................... len:20 al:71
................................................ACUGCAGCUAAAUACUCCGCUcC.................... len:23 al:1
................................................ACUGCAGCUAAAUACUCCGCU...................... len:21 al:508
................................................ACUGCAGuUAAAUACUCCGCUGC.................... len:23 al:1
................................................ACUGCAGCUAAAUgCUCCGCUGC.................... len:23 al:3
................................................ACUaCAGCUAAAUACUCCGC....................... len:20 al:8
.................................................CcGCAGCUAAAUACUCCGC....................... len:19 al:1
.................................................CUGCgGCUAAAUACUCCGCUGC.................... len:22 al:1
.................................................CUGCgGCUAAAUACUCCG........................ len:18 al:1
.................................................CUGCAGCUAAAUACUCCGCU...................... len:20 al:21
.................................................CUGCAGCUAAAUACUCCGCUG..................... len:21 al:1
.................................................CUGCAGCUAAAUACUCCGa....................... len:19 al:1
.................................................CUGCAGCUAAAUACUCCGCc...................... len:20 al:4
.................................................CUGCAGCUAAAUACUCCGCa...................... len:20 al:1
.................................................CUGCAGCUAAAUACUCCGu....................... len:19 al:18
.................................................CUGCAGCUAAAUACUCCGg....................... len:19 al:1
.................................................CUGCAGCUAAAUACUCCa........................ len:18 al:1
.................................................CUGCAGCUAAAUACUCCGC....................... len:19 al:91
.................................................CUGCAGCUAAAUACUCCGCUGC.................... len:22 al:1
.................................................CUGCAGCUAAAUACUCCu........................ len:18 al:1
.................................................CUGCAGCUAAAUACUCCGCUu..................... len:21 al:1
.................................................CUGCAGCUgAAUACUCCGC....................... len:19 al:1
..................................................UGCAGCUAAAUACUCCGu....................... len:18 al:2
..................................................UGCAGCUAAAUACUCCGCU...................... len:19 al:16
..................................................UGCAGCUgAAUACUCCGC....................... len:18 al:2
..................................................UGCAGCUAAAUACUCCGCc...................... len:19 al:1
..................................................UGCAGCUAAAUACUCCGa....................... len:18 al:1
..................................................UGCAGCUAAAUACUCCGC....................... len:18 al:11
...................................................GCAGCUAAAUACUCCGCUa..................... len:19 al:1
...................................................GCAGCUAAAUACUCCGCc...................... len:18 al:1
.....................................................AGCUAAAUACUCCGCUGCa................... len:19 al:1
.....................................................AGCUAAAUACUCCGCUGC.................... len:18 al:5
......................................................GCUAAAUACUCCGCUGCu................... len:18 al:2
......................................................GCUAAAUACUCCGCUGCG................... len:18 al:1
.......................................................CUAAAUACUCCGCUGCuC.................. len:18 al:1