Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ntLink_6:13351746-13351842 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_1882.ps.pdf
Locus Name: Cluster_1882
ACAGUUUCUGUCCGUGGCUCUAAAAUGUCGGUUGCUUAAGCUCUCUAAUAGUAAGCUCAAGCACACGACGUUUUGGAGCCACGGGCGGCAAAAGCAA
...(((((((((((((((((((((((((((..(((((.((((..((...))..)))).)))))..)))))))))))))))))))))))...)))).. (-55.30)
ACAGUUUCUGUCCGUGGCUCUAAAAcG...................................................................... len:27 al:1
ACAGUUUCUGUCCGUGGCUu............................................................................. len:20 al:1
.CAGUUUCUGUCCGUGGCUCU............................................................................ len:20 al:1
.CAGUUUCUGUCCGUGGCU.............................................................................. len:18 al:1
.uAGUUUCUGUCCGUGGCUC............................................................................. len:19 al:1
.CAGUUUCUGUCCGUGGCUu............................................................................. len:19 al:3
.CAGUcUCUGUCCGUGGCUC............................................................................. len:19 al:1
.CAGUUUCUGUCCGUGGCUC............................................................................. len:19 al:17
.CAGUUUCUGUCCGUGGCUa............................................................................. len:19 al:1
..AGUUUCUGUCCGUGGCUC............................................................................. len:18 al:5
...GUUUCUGUCCGUGGCUCU............................................................................ len:18 al:1
........UGUCCGUGGCUCUAAAAUGU..................................................................... len:20 al:1
...........CCGUGGCUCUAAAAUGUCGGc................................................................. len:21 al:1
...................aUAAAAUGUCGGUUGCUUAAGCU....................................................... len:23 al:2
...................uUAAAAUGUCGGUUGCUUAAGCU....................................................... len:23 al:1
...................CUAAAAUGUCGGUUGCUUAAGCU....................................................... len:23 al:3
....................UAAAAcGUCGGUUGCUUAAGCU....................................................... len:22 al:20
....................UAAAAUGUCGGUUGCUUAAGCUCUCUAAU................................................ len:29 al:10
....................UAAAcUGUCGGUUGCUUAAG......................................................... len:20 al:1
....................UAAAAcGUCGGUUGCUUA........................................................... len:18 al:1
....................UAAAAUGUCGaUUGCUUAAGCU....................................................... len:22 al:4
....................UAAAAUGUCGGUUGCUUAAGu........................................................ len:21 al:89
....................UAAAAUGUCGGUUGCUUAAGuU....................................................... len:22 al:13
....................UAAAAUGUCGGUUGCUcAAGCU....................................................... len:22 al:10
....................UAAAAUGUCGGUUGCU............................................................. len:16 al:2
....................UAgAAUGUCGGUUGCUUAAGCUCU..................................................... len:24 al:3
....................UAAAAUGUCGGUUGCUUcAGCU....................................................... len:22 al:3
....................UAAAAUGUCGGUUGCgUAAGCU....................................................... len:22 al:2
....................UAAAAUGUCGGUUGCUUAAGCUaUC.................................................... len:25 al:2
....................UAAAAUGUCcGUUGCUUAAGCU....................................................... len:22 al:1
....................UAAAAUGcCGGUUGCUUAAGCU....................................................... len:22 al:17
....................UAAAAUGUCGGcUGCUUA........................................................... len:18 al:1
....................UAAAAUGUCGGUUGCUa............................................................ len:17 al:1
....................UAAAAUGUCGGUUGCUUAAGCUCUa.................................................... len:25 al:1
....................UAAAAUGUCGGUUGCUUAAGCUuU..................................................... len:24 al:17
....................UAAAAUGUCGuUUGCUUAAGCU....................................................... len:22 al:2
....................UAAgAUGUCGGUUGCUUA........................................................... len:18 al:1
....................UAAAAUGgCGGUUGCUUAAGCU....................................................... len:22 al:1
....................UAAAAUaUCGGUUGCUUAAGCU....................................................... len:22 al:7
....................UAAAAUGUCGGUcGCUUAAGCU....................................................... len:22 al:13
....................UAAAAUGUuGGUUGCUUAAG......................................................... len:20 al:1
....................UAAAAUGUCGGUUGCUUAAGCUCa..................................................... len:24 al:7
....................UAAgAUGUCGGUUGCUUAAGC........................................................ len:21 al:4
....................UAAAAUGUCGGUUGCUUAAGg........................................................ len:21 al:4
....................UAAAAUGUCGGUUGCaUAAGCU....................................................... len:22 al:3
....................UAAAcUGUCGGUUGCUUAAGCU....................................................... len:22 al:10
....................UAAcAUGUCGGUUGCUUAAGC........................................................ len:21 al:1
....................UAAAAUGUCGGUUGCUU............................................................ len:17 al:5
....................UAAAAUGUCGGUUGCUUAAGCUCUC.................................................... len:25 al:13
....................cAAAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:13
....................UAAAgUGUCGGUUGCUUAAGC........................................................ len:21 al:2
....................UAAAAUcUCGGUUGCUUAAGCU....................................................... len:22 al:2
....................UAAAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:7261
....................UAAAAUGUCGGUUGCUUAAuCU....................................................... len:22 al:1
....................UAAAAUGUCGGUUGCUUAgGCUCU..................................................... len:24 al:1
....................UAAAAUGUCGGcUGCUUAAGC........................................................ len:21 al:2
....................UAAAAUGUCGGUUaCUUAAGCU....................................................... len:22 al:5
....................UAAAAUGaCGGUUGCUUAAGCU....................................................... len:22 al:3
....................UAAAAUGUCGGUUGCUUAgGCU....................................................... len:22 al:21
....................UAAAAcGUCGGUUGCUUAA.......................................................... len:19 al:1
....................UAAAAUGUCGGUUGCcUAAGC........................................................ len:21 al:6
....................UAAAAUGUCGGaUGCUUA........................................................... len:18 al:1
....................UAAAAUGUCGGUcGCUUAAGC........................................................ len:21 al:6
....................UAcAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:7
....................UAgAAUGUCGGUUGCUUAAGC........................................................ len:21 al:1
....................UAAAAUGUCGGUUGCUUAAGCUCUCc................................................... len:26 al:1
....................UAAAAUGUCGGUUuCUUAAGCU....................................................... len:22 al:2
....................UAAAAUGUCGGUUGCUUAAGCUCg..................................................... len:24 al:4
....................UAAAAUGUCGGUUGCUUAAa......................................................... len:20 al:3
....................UAAAAUGUCGGUaGCUUAAG......................................................... len:20 al:1
....................UAAAAUGUCGGUUcCUUAAGCU....................................................... len:22 al:1
....................UAAAAUGUCGGUUGCUUgAGCU....................................................... len:22 al:776
....................UAAAAUGUCGGUUGCUUAAGC........................................................ len:21 al:1012
....................UAAAAUuUCGGUUGCUUAAGCU....................................................... len:22 al:1
....................UAAAAUGUCGGUUGCUUAAGCUCUCU................................................... len:26 al:3
....................UAAAAUGUCGGUUGCUUu........................................................... len:18 al:17
....................UAgAAUGUCGGUUGCU............................................................. len:16 al:1
....................UAAAAUGUCGGUUGCUUAAGa........................................................ len:21 al:12
....................UAAAAUGUCGGUUGCa............................................................. len:16 al:1
....................UAAAAUGUCGGUUGuU............................................................. len:16 al:1
....................UAAAAUGUCGGUUGCg............................................................. len:16 al:1
....................UAAAAUGUCGGUUGCUUAAGCUa...................................................... len:23 al:130
....................UAAAAUGUCGGUUGCUUAAGCUCUu.................................................... len:25 al:1
....................UAAAgUGUCGGUUGCUUAAGCU....................................................... len:22 al:13
....................UAAAAUGUCaGUUGCUU............................................................ len:17 al:1
....................UAAAAUGUCGGUUGCUUgAGCUCU..................................................... len:24 al:25
....................UAAAAUGUCGGUUGCUUAg.......................................................... len:19 al:1
....................UAAAAUGUCGGUUuCUUAAGC........................................................ len:21 al:1
....................UAAAAUGUCGGUUGCUUAA.......................................................... len:19 al:176
....................aAAAAUGUCGGUUGCUUAAGCUCU..................................................... len:24 al:1
....................UAuAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:2
....................UAAAAUGUCGGUUGCUUAAGCUg...................................................... len:23 al:4
....................UAAAAUGUCGGUUGCUUAAcCU....................................................... len:22 al:3
....................UAAAAUGUCGGUUGCUUA........................................................... len:18 al:477
....................UAAAAUGUCGGUUGCUUg........................................................... len:18 al:20
....................UAAAAUGUCGGUUGCUUgAGCUC...................................................... len:23 al:3
....................UAAAAUGUCGGUUGaUUAAGCU....................................................... len:22 al:1
....................UAAAcUGUCGGUUGCUUAAGCUCU..................................................... len:24 al:1
....................UAAAAUGcCGGUUGCUUAAGC........................................................ len:21 al:4
....................UAAAAUGUCGGUUGCUUAAGCUCUCUAAUu............................................... len:30 al:1
....................UAAAAUGUCGGUUGCUUAgGC........................................................ len:21 al:4
....................UAAAAUGUCGGUUGCUUAgG......................................................... len:20 al:2
....................UAAAAUGUCGGUUGCUUAcGCU....................................................... len:22 al:4
....................UAAAAUGUCGGUUGCUUgAGCUCUCUA.................................................. len:27 al:1
....................UAAAAUGUCGGUUGCUUAc.......................................................... len:19 al:1
....................UAAAAUGUCGGUaGCUUAAGCU....................................................... len:22 al:2
....................UAAAAUGUCaGUUGCUUAA.......................................................... len:19 al:1
....................UAAAAUGUuGGUUGCUUAAGCU....................................................... len:22 al:9
....................UAAAAUGUCGGUUGCUUAAG......................................................... len:20 al:134
....................UAAAAUGUCGGUUGCUcA........................................................... len:18 al:7
....................UAAAAUGUCaGUUGCUUAAGCU....................................................... len:22 al:8
....................UAAAAUGUCGGUUGCUUAAGCUCc..................................................... len:24 al:23
....................aAAAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:2
....................UAAcAUGUCGGUUGCUUAAGCU....................................................... len:22 al:7
....................UcAAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:3
....................UAAAAUGUCGGUUGCUUgAGCUCUC.................................................... len:25 al:6
....................UAAAAUGUCGGUUGCUUAAGCUCUCUAAUA............................................... len:30 al:5
....................UAAAAUGUCGGUUGCUUAAGCcCUCUAAU................................................ len:29 al:1
....................UAAAAUGUCGGUUGCUUAAaCU....................................................... len:22 al:10
....................UAAAAUGUCGGUUGCUUAAGCaCU..................................................... len:24 al:1
....................UcAAAUGUCGGUUGCUUA........................................................... len:18 al:1
....................UAAAAUGUuGGUUGCUUAAGC........................................................ len:21 al:1
....................UAAAAUGUCGGUUGCUaAAGCU....................................................... len:22 al:2
....................UAAAAcGUCGGUUGCUUAAGC........................................................ len:21 al:2
....................UAAAAUGUCaGUUGCUUAAGC........................................................ len:21 al:2
....................UAAAAUGUCGGUUGCUUAAGCa....................................................... len:22 al:477
....................UAAAAUGUCGGUUGCUUAAGCUCUCUA.................................................. len:27 al:3
....................UAAAAUGUCGGUUGCUUAAGCc....................................................... len:22 al:1041
....................UAAAAUGUCGGUUGCUUAAGCUC...................................................... len:23 al:19
....................UAAAAUGUCGGUUGuUUAAGCU....................................................... len:22 al:7
....................UAAAAUGUCGGcUGCUUAA.......................................................... len:19 al:1
....................UAAAAUGUCGGUUaCUUA........................................................... len:18 al:1
....................UAAAAUGUCGGUUGCUUAuGCU....................................................... len:22 al:1
....................UAAAAUGUCGGUUGCUUAAaC........................................................ len:21 al:1
....................UAAAAUGUCGGUUGCUUuA.......................................................... len:19 al:3
....................UAAAAUGUCGGUUGCUUAAGCUCU..................................................... len:24 al:172
....................UAAAAUGUCGGUUGCUUAAGCUCUCUAuU................................................ len:29 al:1
....................UAAAAUGUCGGUUGCUUAAGCg....................................................... len:22 al:117
....................UAAAAUGUCuGUUGCUUAAGCU....................................................... len:22 al:3
....................cAAAAUGUCGGUUGCUUAAGC........................................................ len:21 al:2
....................UAAAAUGUCGGUUGCUUAAGCUaU..................................................... len:24 al:35
....................UAAAAUGUCGGUUGCUUAAGCUCUCUAu................................................. len:28 al:3
....................UAAAAUGUCGGUUGCUUAAGCUu...................................................... len:23 al:46
....................UAAAAUGUCaGUUGCUUA........................................................... len:18 al:2
....................UAAAAUGUCGcUUGCUUA........................................................... len:18 al:1
....................UAAAAUGUCGGcUGCUUAAGCU....................................................... len:22 al:25
....................UAAAAUGUCGGUUGCaUA........................................................... len:18 al:2
....................UAgAAUGUCGGUUGCUUA........................................................... len:18 al:1
....................UAAAAUGUCGGUUGCUUgAGC........................................................ len:21 al:166
....................UAAAgUGUCGGUUGCUUA........................................................... len:18 al:3
....................UAAAAUGUCGGUUGCUUAAGCUCUuU................................................... len:26 al:2
....................UAAgAUGUCGGUUGCUUAAGCU....................................................... len:22 al:6
....................UAgAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:21
....................UAAAAUGUCGGUUGCUUAAGaU....................................................... len:22 al:3
....................UAAAAUGUCGGUUGCcUAAGCU....................................................... len:22 al:18
....................UAAAAUGUCGGUUGCUUgA.......................................................... len:19 al:14
....................UAAAAUGcCGGUUGCUUA........................................................... len:18 al:2
....................UAAAAUGUCGGUUGCUUgAG......................................................... len:20 al:15
....................UAAAAUGcCGGUUGCUUAAGCUC...................................................... len:23 al:1
....................UgAAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:8
....................UAAAAUGUCGGUUGCUUc........................................................... len:18 al:3
....................UAAAAUGUCGGUUGCgUA........................................................... len:18 al:2
.....................uAAAUGUCGGUUGCUUAAGCU....................................................... len:21 al:3
.....................AAAAUGUCGGUUGCUUAAGCUCc..................................................... len:23 al:9
.....................AAAAUGUCGGUUGCUUAAGCUaU..................................................... len:23 al:1
.....................AAAAUGUCGGUUGCUUAAGCUCUC.................................................... len:24 al:2
.....................AAAAUGUCGGUUGCUUAAGCUCUa.................................................... len:24 al:4
.....................AAAAUGUCGGUUGCUUgAGCUC...................................................... len:22 al:17
.....................AAAAUGUCGGUUGCUUAAGC........................................................ len:20 al:6
.....................AAAAUGUCGGUUGCUUAAGCg....................................................... len:21 al:1
.....................AAAAUGUCGGUUGCUUAAGCUuU..................................................... len:23 al:1
.....................AAAAUGUCGGUUGCUUAAGCU....................................................... len:21 al:55
.....................AAAAUGUCGGUUGCUUAAGCc....................................................... len:21 al:8
.....................AAAAUGUCGGUUGCU............................................................. len:15 al:1
.....................AAAAUGUCGGUUGCUUAAGCUCU..................................................... len:23 al:75
.....................AAAAUGUCGGUUGCUUgAGCUCU..................................................... len:23 al:61
.....................AAAAUGUCGGUUGCUUAAGCUCUCUAAU................................................ len:28 al:1
.....................AAAAUGUCGGUUGCUUAAGCUCg..................................................... len:23 al:3
.....................AAAAUGUCGGUUGCUUgA.......................................................... len:18 al:1
.....................AAAAUGUCGGUUGCUUgAGCUCUCUAAU................................................ len:28 al:2
.....................AAAAUGUCGGUUGCUUgAGCU....................................................... len:21 al:20
.....................uAAAUGUCGGUUGCUUAAGC........................................................ len:20 al:1
.....................AAAAUGUCGGUUGCUUAAGCUC...................................................... len:22 al:6
.....................AAAAUGUCGGUUGCUUAAGCa....................................................... len:21 al:3
.....................AAAAUGUCGGUUGCUUAAGCUCUaU................................................... len:25 al:1
.....................AAAAUGUCGGcUGCUUAAGCUCU..................................................... len:23 al:1
.....................AAAAUGUCGGUUGCUUAAG......................................................... len:19 al:3
.....................AAAAUGUCGGUUGCUUAAGCUgU..................................................... len:23 al:1
.....................uAAAUGUCGGUUGCUUAAG......................................................... len:19 al:1
.....................AAAAUGUCGGUUGCUUAAGCUCa..................................................... len:23 al:9
.....................AAAAUGUCGGUUGCUUgAGC........................................................ len:20 al:3
.....................AAAAUGUCGGUUGCUUAAGCUCUu.................................................... len:24 al:10
.....................AAAAUGUCGGUUGCUUAA.......................................................... len:18 al:4
.....................AAAAUGUCGGUUGCUUAAGCUa...................................................... len:22 al:1
.....................AAAAUGUCGGUUGCUUAAGCUCUCUA.................................................. len:26 al:1
......................AAAUGUCGGUUGCUUAAGCUCUC.................................................... len:23 al:3
......................AAAUGUCGGUUGCUUAAGCUCa..................................................... len:22 al:2
......................AAAUGUCGGUUGCUUgAGCU....................................................... len:20 al:2
......................AAAUGUCGGUUGCUUgAGCUCU..................................................... len:22 al:9
......................AAAUGUCGGUUGCUUAAGCUCUu.................................................... len:23 al:1
......................gAAUGUCGGUUGCUUAAGCUCU..................................................... len:22 al:2
......................AAAUGUCGGUUGCUUAAGCUCUCg................................................... len:24 al:1
......................AAAUGUCGGUUGCUUAAGCUCU..................................................... len:22 al:30
......................AAAUGUCGGUUGCUUAgGCUCU..................................................... len:22 al:1
......................AAAUGUCGGUUGCUUgAGC........................................................ len:19 al:3
......................AAAUGUCGGUUGCUUAAGCc....................................................... len:20 al:1
......................AAAUGUCGGUUGCUUAAGCUaU..................................................... len:22 al:1
......................AAAUGUCGGUUGCUUAA.......................................................... len:17 al:1
......................AAAUGUCGGUUGCUUAAGCU....................................................... len:20 al:10
......................AAAUGUCGGUUGCUUAAGCcCU..................................................... len:22 al:1
......................AAAUGUCGGUUGCUUAAGCUCc..................................................... len:22 al:1
.......................AAUGUCGGUUGCUUAAGCUC...................................................... len:20 al:1
.......................AAUGUCGGUUGCUUAgGCUCU..................................................... len:21 al:1
.......................AAUGUCGGUUGCUUAAGC........................................................ len:18 al:2
.......................AAUGUCGGUUGCUUAAGCUCUC.................................................... len:22 al:1
.......................AAUGUCGGUUGCUUAAGCU....................................................... len:19 al:3
.......................AAUGUCGGUUGCUUAAGCUCU..................................................... len:21 al:6
.......................AAUGUCGGUUGCUUAAGCUCUCU................................................... len:23 al:1
.......................AAUGUCGGUUGCUUgAGCU....................................................... len:19 al:3
.......................AAUGUCGGUUGCUUgAGCUCU..................................................... len:21 al:1
........................AUGUCGGUUGCUUAAGCUCUCU................................................... len:22 al:1
........................AUGUCGGUUGCUUAAGCUCg..................................................... len:20 al:1
........................AUGUCGGUUGCUUAAGCU....................................................... len:18 al:4
........................AUGUCGGUUGCUUgAGCU....................................................... len:18 al:1
........................AUGUCGGUUGCUUAAGCUCU..................................................... len:20 al:2
........................AUGUCGGUUGCUUAAGCUCa..................................................... len:20 al:2
.........................UGUCGGUUGCUUAAGCUCUCUAAUAGUAAG.......................................... len:30 al:1
.........................UGUCGGUUGCUUgAGCUCU..................................................... len:19 al:1
.........................UGUCGGUUGCUUAAGCUCUu.................................................... len:20 al:1
.................................GCUUAAGCUCUCUAAU................................................ len:16 al:1
..........................................CUCUAAUAGUAAGCUCAAGCACA................................ len:23 al:1
............................................CUAAUAGUAAGCUCAAGuACACGACGUUUU....................... len:30 al:1
............................................CUAAUAGUAAGCUCAAGCACACGACGUUUU....................... len:30 al:6
............................................CUAAUAGUAAGCUCAAGCACu................................ len:21 al:2
............................................CUAAUAGUAAGCUCAAGCACACGACGU.......................... len:27 al:14
............................................CUAAUAGUAAGCUCAAGCACACGACGUU......................... len:28 al:2
............................................CUAAUAGUAAGCUCAAGC................................... len:18 al:1
............................................CUAAUAGUAAGCUCAAGCACACGACGUUUUG...................... len:31 al:1
............................................CUAAUAGUAAGCUCAAGCACACGACGUUU........................ len:29 al:4
............................................CUAAUAGUAAGCUCAAGCACACGgCGU.......................... len:27 al:2
............................................CUAAUAGUAAGCUCAAGCACA................................ len:21 al:3
............................................CUAAUAGUAAGCUCAAGCACACGACGa.......................... len:27 al:1
............................................CUAAUAGUAAGCUCAAGCAC................................. len:20 al:1
.............................................UAAUAGUAAGCUCAAGCACACGACGUUUUGG..................... len:31 al:3
.............................................UAAUAGUAAGCUCAAGCACACGACGUU......................... len:27 al:2
.............................................UgAUAGUAAGCUCAAGCACACGACGUUUU....................... len:29 al:1
.............................................UAAUAGUAAGCUCAAGCACACGACu........................... len:25 al:1
.............................................UAAUAGUAAGCUCAAGCACA................................ len:20 al:1
.............................................UAAUAGUAAGCUCAAGCACACGACGUUU........................ len:28 al:2
..............................................AAUAGUAAGCUCAAGCACACGACGU.......................... len:25 al:1
..............................................AAUAGUAAGCUCAAGCACACGACGUUUUGGA.................... len:31 al:1
..............................................AAUAGUAAGCUCAAGCACACGACGUUUU....................... len:28 al:1
..............................................AAUAGUAAGCUCAAGCACACGACGUUUUGG..................... len:30 al:1
..............................................AAUAGUAAGCUCAAGCACACGACGUU......................... len:26 al:2
...............................................AUAGUAAGCUCAAGCACACGACGUUUUGGA.................... len:30 al:2
...............................................AUAGUAAGCUCAAGCACACGACGUUUUGG..................... len:29 al:1
...............................................AUAGUAAGCUCAAGCACACGACGUUUUG...................... len:28 al:1
................................................UAGUAAGCUCAAGCACACGACGUUUUGGA.................... len:29 al:3
..................................................GUAAGCUCAAGCACACGACGUUUUGG..................... len:26 al:1
..................................................GUAAGCUCAAGCACACGACGUUUUG...................... len:25 al:2
...................................................UAAGCUCAAGCACACGACGUUa........................ len:22 al:1
...................................................UAAGCUCAAGCACACGACGUUUUG...................... len:24 al:3
...................................................UAAGCUCAAGCACACGACGUUUUGG..................... len:25 al:1
...................................................UAAGCUCAAGCACACGACGUU......................... len:21 al:2
...................................................UAAGCUCAAGCACACGACGUc......................... len:21 al:3
...................................................UAAGCUCAAGCACACGACGU.......................... len:20 al:2
...................................................UAAGCUCAAGCACACGACGUUUUGGu.................... len:26 al:2
....................................................AAGCUCAAGCACACGACGUUUUG...................... len:23 al:2
....................................................AAGCUCAAGCACACGACGUUUUGG..................... len:24 al:1
.....................................................AGCUCAAGCACACGACGUUUUGG..................... len:23 al:1
......................................................GCUCAAGCACACGACGUU......................... len:18 al:1
......................................................GCUCAAGCACACGACGUUUUGa..................... len:22 al:5
......................................................GCUCAAGCACACGACGUUUUGGAu................... len:24 al:1
......................................................GCUCAAGCACACGACGUUUUGc..................... len:22 al:1
......................................................GCUCAAGCACACGACGUUUU....................... len:20 al:1
......................................................GCUCAAGCACACGACGUUUUGG..................... len:22 al:6
......................................................GCUCAAGCACACGACGUUUUG...................... len:21 al:1
.......................................................CUCAAGCgCACGACGUUUUGG..................... len:21 al:1
.......................................................CUCAAGCACACGACGUUUUGGu.................... len:22 al:3
.......................................................CUCAAGCACACGACGUUUUGGAuC.................. len:24 al:1
.......................................................CUCAAGCACACGACGUUUUG...................... len:20 al:1
.......................................................CUCAAGCACACGgCGUUUUGGA.................... len:22 al:1
.......................................................CUCAAGCACACGACGUUUUGGAc................... len:23 al:1
.......................................................CUCAAGCACACGACGUUUUGG..................... len:21 al:7
.......................................................CUCAAGCACACGACGUUU........................ len:18 al:7
.......................................................CUCAAGCACACGACGUUUcGGA.................... len:22 al:1
.......................................................CUCAAGCACACGACGUUUUGGAu................... len:23 al:7
.......................................................CUCAAGCACACGACGUUUU....................... len:19 al:4
.......................................................CUCAAGCACACGACGUUUUGGA.................... len:22 al:29
.......................................................CUCAAGCACACGACGUUUUGGAG................... len:23 al:2
.......................................................CUCAAGCACACGACGUUcUGGA.................... len:22 al:1
.........................................................CAAGCACACGACGUUUUGGAu................... len:21 al:1
.........................................................CAAGCACACGACGUUUUGG..................... len:19 al:1
.............................................................CACACGACGUUUUGGAGCCACG.............. len:22 al:2