Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ntLink_6:7263486-7263580 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1865.ps.pdf
Locus Name: Cluster_1865
CAGAGAUUUUGCAUUGCAUUUUUCAAAUUAGGAAGGGAGGUGUUUUACUGAACACCGCUCUGCUAAUUUGAAGAGAUACAGUGUAAGAAUUUGCA
((((..((((((((((..(((((((((((((..((((.(((((((....))))))).)))).)))))))))))))...)))))))))).)))).. (-37.30)
CAGAGAUUUUGCAUUGCAUU........................................................................... len:20 al:49
CAGgGAUUUUGCAUUGCAUU........................................................................... len:20 al:1
CAGAGAUUUUGCAUUGCAUa........................................................................... len:20 al:1
CAGAGAUUUUGCAUUGCAUc........................................................................... len:20 al:6
.AGAGAcUUUGCAUUGCAUU........................................................................... len:19 al:2
.AGAGAUUUUGCAUUGCAUa........................................................................... len:19 al:1
.AGAGAUUUUGCAUUGCAUU........................................................................... len:19 al:139
.AGAGAUUUUGCAUUGCAUc........................................................................... len:19 al:1
.AGAGAUUUUGCAUUGCAUg........................................................................... len:19 al:1
.AGAGAUUUUGCAUUGCAgU........................................................................... len:19 al:1
.AGAGAUUUcGCAUUGCAUU........................................................................... len:19 al:2
.AGAGAUUUUGCAcUGCAUU........................................................................... len:19 al:1
.AGgGAUUUUGCAUUGCAUU........................................................................... len:19 al:3
..GAGAUUUUGCAUUGCAUc........................................................................... len:18 al:3
..GAGAUUUUGCAUUGCAUU........................................................................... len:18 al:22
................CAUUUUUCAAAUUAGGAAGGGAGGUGU.................................................... len:27 al:1
..................UUUUUCAAAUUAGGAAGGGAGGUGU.................................................... len:25 al:1
..................UUUUUCAAAUUAGGAAGGGAGGU...................................................... len:23 al:1
...................UUUUCAAAUUAGGAAGGGAGGa...................................................... len:22 al:2
...................UUUUCAAAUUAGGAAGGGA......................................................... len:19 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:26 al:13
...................UUUUCAAAUUAGGAAGGGAGGUG..................................................... len:23 al:22
...................UUUUCAAAUUAGGAAGGGAGGUc..................................................... len:23 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGcUU.................................................. len:26 al:1
...................UUUUCAAgUUAGGAAGGGAGGUG..................................................... len:23 al:1
...................UUUUCAAAUUAGGAAGGGAGu....................................................... len:21 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGUa................................................... len:25 al:5
...................UUUUCAAAUUAGGAAGGGAGGUaUUU.................................................. len:26 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGUU................................................... len:25 al:20
...................cUUUCAAAUUAGGAAGGGAGGUGUU................................................... len:25 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGc.................................................... len:24 al:7
...................UUUUCAAAUUAGGAAGGGAGGUGUUc.................................................. len:26 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGU.................................................... len:24 al:42
...................UUUUCAAAUUAGGAAGGGAG........................................................ len:20 al:2
...................UUUUCAAAUUAGGAAGGGAGGU...................................................... len:22 al:5
...................UUUUCAAAUUAGGAAGGGAGGUa..................................................... len:23 al:5
...................UUUUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:27 al:2
...................UUUUCAAAUUAGGAAGGGAGGUGUc................................................... len:25 al:2
...................UUUUCAAAUcAGGAAGGGAGGUGUU................................................... len:25 al:2
...................UUUUCAAAUUAGGAAGGGAGG....................................................... len:21 al:3
...................UUUUCAAAUUAGGAAGGGAGGUGUUa.................................................. len:26 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGg.................................................... len:24 al:1
...................UUUUCAcAUUAGGAAGGGAGGUGU.................................................... len:24 al:1
...................UUUUCAAAUUAGGAAGGGAGGUuUU................................................... len:25 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGUaUU................................................. len:27 al:1
...................UUUUCAAAUUAGGAAGGGAGGc...................................................... len:22 al:2
...................UUUUCAAAUUAGGAAGGGAGGUuU.................................................... len:24 al:1
....................UUUCAAAUUAGGAAuGGAGGUGUU................................................... len:24 al:1
....................UUUCAgAUUAGGAAGGGAGGU...................................................... len:21 al:2
....................cUUCAAAUUAGGAAGGGA......................................................... len:18 al:2
....................UUcCAAAUUAGGAAGGGAGGUGU.................................................... len:23 al:1
....................UUUCAAAUUAGGAAGGGAGG....................................................... len:20 al:103
....................UUUCAAAUUAGGAAGGGAGGUGcUU.................................................. len:25 al:9
....................UUUCAAAUUAGGAAGGaAGGUG..................................................... len:22 al:2
....................UUUCAAAUUAGGAAGGGAGGUGUc................................................... len:24 al:370
....................UUUCgAAUUAGGAAGGGAGGU...................................................... len:21 al:1
....................UUUCAAAUUgGGAAGGGAGGUGUUU.................................................. len:25 al:6
....................UcUCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:9
....................UUUCAAAUUAGGAAGGGgGGU...................................................... len:21 al:2
....................UUUCAAAUUAGGAAGGGcGGUGUUU.................................................. len:25 al:1
....................UUUCcAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAcGGGAGGUGUU................................................... len:24 al:3
....................UUUCAAAUUAGGAAGGGAaGUGUU................................................... len:24 al:3
....................UUUCAgAUUAGGAAGGGAGGUG..................................................... len:22 al:1
....................UUUCAAAUUAGuAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGGUGa.................................................... len:23 al:20
....................UUcCAAAUUAGGAAGGGAGGUG..................................................... len:22 al:1
....................UaUCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGaGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGGUc..................................................... len:22 al:3
....................UUUCAAAUUgGGAAGGGAGGUGUU................................................... len:24 al:14
....................UUUCAAAUUAGGAAGGGAGGUGUaUU................................................. len:26 al:3
....................UUUCAAAUUAGGAAGGGAGGUGUg................................................... len:24 al:34
....................UUUCAAAUUAGGAcGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGgGGUGU.................................................... len:23 al:3
....................UUUCAAAUUAGGAAGGGAGa....................................................... len:20 al:17
....................UUUCAAAUUAGGAAGGGgGGUGUU................................................... len:24 al:12
....................UUUCAAAUUAGGgAGGGAGG....................................................... len:20 al:1
....................UUUCAAAUUAGGAAGaGA......................................................... len:18 al:1
....................aUUCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGgGGUGUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:323
....................UUUCAAAUUAGGgAGGGAGGUGUU................................................... len:24 al:8
....................UUUCAAcUUAGGAAGGGAGGUG..................................................... len:22 al:1
....................UUUCAAAUUAGGAAaGGAGGUGUU................................................... len:24 al:2
....................UUUCAAAcUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUUUu................................................ len:27 al:48
....................cUUCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:24
....................UUUCAAAUUAGGAAGGGAGGUaU.................................................... len:23 al:3
....................UUUCAAAUUAGGAAGGGAGGgGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGaGAGGUGUU................................................... len:24 al:5
....................UUUCAAAUUAGGAAGGGAGGUGUUUUc................................................ len:27 al:5
....................UUUCAAAUUAGGAAGGGAGGUGUUUUA................................................ len:27 al:18
....................UUUCAAAUUAGGAAGGGAGGUGcU................................................... len:24 al:52
....................UUUCAAAUUAGGAAGGGgGGUGUUU.................................................. len:25 al:6
....................UUUCAAAUUAGGAAGGaAGGUGUU................................................... len:24 al:3
....................UUUCAAAUUAGGAcGGGAGG....................................................... len:20 al:1
....................UUUCAAAUUAGGAAGGGAGaUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGgAGGGAGGUGU.................................................... len:23 al:4
....................UUUCAAAUUAGGAAGGGAGGc...................................................... len:21 al:33
....................UUUCAAAUUAGGAAGGGAGGUGcUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUa................................................... len:24 al:72
....................UUUCAAAUUAGGAAGGGAGGUGUUUg................................................. len:26 al:1
....................UUcCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:9
....................UUUCAAAUUAGGAAGGGAGGUGUUUc................................................. len:26 al:11
....................UUUCAAAUUAGGAAGaGAGGUG..................................................... len:22 al:1
....................cUUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:2
....................UUUCAAAcUAGGAAGGGAGGUGU.................................................... len:23 al:1
....................UUUCAAAUUAGGAAGGGAGaUGUU................................................... len:24 al:6
....................UUUCAAAUUAGGgAGGGAG........................................................ len:19 al:2
....................UUcCAAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAGGUGaU................................................... len:24 al:4
....................UUUCAAuUUAGGAAGGGAGGUGU.................................................... len:23 al:1
....................UUUCAAAUUAGGAAGGGAGGg...................................................... len:21 al:4
....................UUUCgAAUUAGGAAGGGAGGUGUU................................................... len:24 al:13
....................UUUCAAAUUAGGAAGGGAGGUGUcU.................................................. len:25 al:4
....................UUUCAAAUUcGGAAGGGAGGUGUU................................................... len:24 al:3
....................UUUCAAAUUAGGAcGGGAGGU...................................................... len:21 al:1
....................UUUuAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:2
....................UUUCAAAUUAGGAgGGGAGGUGUU................................................... len:24 al:19
....................UUUCAgAUUAGGAAGGGAGGUGU.................................................... len:23 al:1
....................UUUCAAAUUAGGAAGGGAGGUa..................................................... len:22 al:22
....................UUUCAcAUUAGGAAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAgGGGAGGUGUUU.................................................. len:25 al:2
....................UUUCAAAUUAGGAAGGGAGGUGUgU.................................................. len:25 al:3
....................UUUCAAAUUAGGAAGGGAGGUaUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGcAGGGAGGUGUUUU................................................. len:26 al:3
....................aUUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUgGGAAGGGAGGUGU.................................................... len:23 al:3
....................UUUCAAAUUAGGAAGGGAGGUaUU................................................... len:24 al:5
....................UUUCAAAUUAGGAAGGGg......................................................... len:18 al:1
....................UUUCAAAUUAGGAAGGGuGGUGUU................................................... len:24 al:2
....................UcUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:6
....................UUUCAAAUUAGGAAGGGAGGcGU.................................................... len:23 al:1
....................UUUCAAAUUAGGuAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGuGGUGU.................................................... len:23 al:3
....................UUUCAAAUUAGGAAGGGAGGUG..................................................... len:22 al:229
....................UUUCAAAUUAGGAAGGGAGGUGUUUgA................................................ len:27 al:1
....................UUUCAAAUUAGGAAGGGAaGUGUUU.................................................. len:25 al:1
....................UUUCAAgUUAGGAAGGGAGGUGU.................................................... len:23 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUUaA................................................ len:27 al:2
....................UUUCAAAUUgGGAAGGGAGGUGUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAGGUuUUUU................................................. len:26 al:1
....................UcUCAAAUUAGGAAGGGAGGUGU.................................................... len:23 al:3
....................UUUCAAAUUAGGAAGuGAGGU...................................................... len:21 al:2
....................UUUCAAuUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAgUAGGAAGGGAGGUGU.................................................... len:23 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUUa................................................. len:26 al:93
....................UUUCAAAUUAGGAAGGGAGu....................................................... len:20 al:13
....................UUUCAAAUUAGGuAGGGAGGUGUUU.................................................. len:25 al:2
....................UUUCAAAUUAGGAAGGGAGGUGUUaU................................................. len:26 al:111
....................UUUCAgAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:5
....................UUUCAAAaUAGGAAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUa.................................................. len:25 al:381
....................UUUCAAAUUAGGAAGGaAGGUGUUU.................................................. len:25 al:2
....................UUUCAAAUUAGGAgGGGAGGU...................................................... len:21 al:1
....................UUUCAAAUUAGGAAGGGA......................................................... len:18 al:63
....................UUUCAAAUUAGGAAGGuAGGUGUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGgAGGGAGGUGUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGG.......................................................... len:17 al:4
....................UUUCAAAUUAGGAAGGGAGaUGUUUU................................................. len:26 al:1
....................UUUuAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:2
....................UUUCAAAUUAGGAAGGGAGGUGUaU.................................................. len:25 al:9
....................cUUCAAAUUAGGAAGGGAGGUGU.................................................... len:23 al:7
....................UUUCAAAUUAGaAAGGGAGGU...................................................... len:21 al:1
....................UUUCAAAUUAGGAAGGGAG........................................................ len:19 al:120
....................UUUCAAAUUAGGAAGGGAGGUGUgUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAuGUGUU................................................... len:24 al:2
....................UUUCAAAUUAGGAAGGGAGGUGgUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGuGGUGUUUU................................................. len:26 al:2
....................UUUCAAAUUAGGAAGGGgGG....................................................... len:20 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUUUAu............................................... len:28 al:5
....................UUUCAAAUUAGGAAGGGAGGUGg.................................................... len:23 al:6
....................UUUCcAAUUAGGAAGGGAGGUGUU................................................... len:24 al:5
....................UUUCAAgUUAGGAAGGGAGGUGUUU.................................................. len:25 al:5
....................UUUCAAAUcAGGAAGGGAG........................................................ len:19 al:2
....................UUUCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:4736
....................UUUCAAAUUAGGAAGGGAGGUGUUcU................................................. len:26 al:5
....................UUUCAAAUUAGGAAGGGAGGUu..................................................... len:22 al:9
....................UUUCAAAUUAGGAAGGuAGGUGUU................................................... len:24 al:1
....................UUUCgAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:9
....................UUUCAAAUUAGGAAGGcAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGgAGGGAGGUGUUU.................................................. len:25 al:10
....................UUUCAgAUUAGGAAGGGAGGUGUU................................................... len:24 al:15
....................UUUCAAAUUAGGAAGGGAGGUGUUc.................................................. len:25 al:167
....................UUUCAAAUUAGGAAGGGAGGUuU.................................................... len:23 al:3
....................UUUCAAAUUAGGAAGGGAGGcGUUU.................................................. len:25 al:4
....................UUUCgAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAgGGGAGG....................................................... len:20 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUaUA................................................ len:27 al:31
....................UUUCAAAUUAGGAAGGGAa........................................................ len:19 al:5
....................UUUCAAAUUcGGAAGGGAGGUGUUU.................................................. len:25 al:4
....................UUUCAAAUUuGGAAGGGAGGUGUU................................................... len:24 al:2
....................UUUCAuAUUAGGAAGGGAG........................................................ len:19 al:1
....................UUUCAAAUUAGGAAGGGAGGgGU.................................................... len:23 al:3
....................UUUCAAAUUAGGcAGGGAGGUGUU................................................... len:24 al:2
....................UUUCAAcUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UcUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:2
....................UUUCAAAUcAGGAAGGGAGGUGUU................................................... len:24 al:5
....................UUUCAAAUUAGGAAGGGAGGcGUU................................................... len:24 al:9
....................UUUCAAAUUAGGAAGGGAGcUGU.................................................... len:23 al:2
....................UUcCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:18
....................UUUCAAAUUuGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGGU...................................................... len:21 al:256
....................UaUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAu........................................................ len:19 al:2
....................UUUCAAcUUAGGAAGGGAGGUGUU................................................... len:24 al:8
....................UUUCAAAUUAGGAAGGGAGGUGgU................................................... len:24 al:15
....................UUUCgAAUUAGGAAGGGAGGUGU.................................................... len:23 al:4
....................UUUCAcAUUAGGAAGGGAGG....................................................... len:20 al:1
....................UUUCAAAUcAGGAAGGGAGGUGUUU.................................................. len:25 al:4
....................UUUCAAAUUAGGAAGGGAGGUGUUg.................................................. len:25 al:10
....................UUUCAAAUUAGGAAGGGAGGUGUUUUACU.............................................. len:29 al:1
....................UUUCAAAUUAGaAAGGGAGGUG..................................................... len:22 al:1
....................UUUCAAAUUAGGAuGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAgUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGGUuUU................................................... len:24 al:5
....................UUUCAAAUUAGGAAGGGAGGUGc.................................................... len:23 al:79
....................UUUCAAAUUAGGAAGGGcGGUGUU................................................... len:24 al:1
....................UUUCAAAUUcGGAAGGGAGGUGU.................................................... len:23 al:3
....................gUUCAAAUUAGGAAGGGAGGUGU.................................................... len:23 al:1
....................UUUCAAAUUAGGAAGGGAGGUGU.................................................... len:23 al:748
....................UUUCAAgUUAGGAAGGGAGGUGUU................................................... len:24 al:9
....................UUUCAAAUUAGaAAGGGAGGUGUU................................................... len:24 al:2
....................UUUCAAAUUAGGcAGGGAG........................................................ len:19 al:1
....................UUUCAAAUUAGGAAaGGAG........................................................ len:19 al:1
....................UUUCAAAUUAGGAAGGGAGGa...................................................... len:21 al:4
....................UUUCAAAUUAGGcAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUaUAC............................................... len:28 al:2
....................UcUCAAAUUAGGAAGGGAG........................................................ len:19 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1993
....................cUUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:13
....................UUUCAAAUUAGGAAGGGAGGUGUUUUuC............................................... len:28 al:2
....................UUUCAAAUUgGGAAGGGAGGU...................................................... len:21 al:2
....................UUUCcAAUUAGGAAGGGAGGU...................................................... len:21 al:1
....................UUUCAAAUUAGGAAGGGAGGUGgUUU................................................. len:26 al:1
....................UUUCAAAcUAGGAAGGGAGGUGUU................................................... len:24 al:8
.....................UUCAAAUUAGGAAGGGAGGUGU.................................................... len:22 al:5
.....................UUCAAAUUAGGAAGGGAGGU...................................................... len:20 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUUUUu................................................ len:26 al:2
.....................UUCAAAUUAGGAAGcGAGGUGUU................................................... len:23 al:1
.....................UUCAAAUUAGGAAGGGAaGUGUU................................................... len:23 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUc................................................... len:23 al:2
.....................UUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:24 al:42
.....................UUCAAAUUAGGAAGGGAGGcGUUU.................................................. len:24 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUUa.................................................. len:24 al:2
.....................UUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:25 al:5
.....................UUCAAAUUAGGAAGGGAGGUGUUaU................................................. len:25 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUUc.................................................. len:24 al:1
.....................UUCAAAUUcGGAAGGGAGGUGUU................................................... len:23 al:1
.....................UUCcAAUUAGGAAGGGAGGUGUU................................................... len:23 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUU................................................... len:23 al:52
.....................UUCAAAUUAGGAAGGGAGGUGgU................................................... len:23 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUUUUA................................................ len:26 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUUUa................................................. len:25 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUa................................................... len:23 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUUaUA................................................ len:26 al:2
.....................UUCAAAUUAGGAAuGGAGGUGUU................................................... len:23 al:1
......................UCAAAUUAGGAAGGGAGGUGUU................................................... len:22 al:3
......................UCAAAUUAGGAAGGGAGGUGUc................................................... len:22 al:1
......................UCAAAUUAGGAAGGGAGGU...................................................... len:19 al:1
......................UCAAAUUAGGAAGGGAGGUGUUUU................................................. len:24 al:1
.......................CAAAUUAGGAAGGGAGGUGU.................................................... len:20 al:2
.......................CAAAUUAGGAAGGGAGGUGUUUU................................................. len:23 al:3
.......................CAAAUUAGGAAGGGAGGU...................................................... len:18 al:1
.......................CAAAUUAGGAAGGGAGGUGUUU.................................................. len:22 al:2
.......................CAAAUUAGGgAGGGAGGUGUUU.................................................. len:22 al:1
.......................CAAAUUAGGAAGGGAGGUGUU................................................... len:21 al:1
.......................CAAAUUAGGAAGGGAGG....................................................... len:17 al:1
........................AAAUUAGGAAGGGAGGUGU.................................................... len:19 al:1
........................AAAUUAGGAAGGGAGGUGUUa.................................................. len:21 al:1
........................AAAUUAGGAAGGGAGGUGUUU.................................................. len:21 al:2
........................AAAUUAGGAAGGGAGGUGUc................................................... len:20 al:1
........................AAAUUAGGAAGGGAGGUGUUUUu................................................ len:23 al:1
........................AAAUUAGGAAGGGAGGUGUU................................................... len:20 al:5
........................AAAUUAGGAAGGGAGGcGUU................................................... len:20 al:1
........................AAAUUAGGAAGGGAGGUGUUUU................................................. len:22 al:1
.........................AAUUAGGAAGGGAGGUGUUU.................................................. len:20 al:2
.........................AAUUAGGAAGGGAGGUGU.................................................... len:18 al:1
..........................AUUAGGAAGGGAGGUGUUU.................................................. len:19 al:3
...........................UUAGGAAGGGAGGUGUUU.................................................. len:18 al:1
.........................................GUUUUACUGAACACCGCUCUGCUA.............................. len:24 al:2
.........................................GUUUUACUGAACACCGCUCUGCUAAUUUGAA....................... len:31 al:2
.........................................GUUUUACUGAACACCGCUCUGCUAAUUU.......................... len:28 al:2
.........................................GUUUUACUGAACACCGCUCUGu................................ len:22 al:1
.........................................GUUUUACUGAACACCGCUCUGCUAAUU........................... len:27 al:2
.........................................GUUUUACUGAACACCGCUCUGC................................ len:22 al:2
..........................................UUUUACUGAACACCGCUCUGu................................ len:21 al:1
...........................................UUUACUGAACACCGCUCUGCUAAUUUGAAG...................... len:30 al:4
...........................................UUUACUGAACACCGCUCUGCUAAUUUGA........................ len:28 al:3
...........................................UUUACUGAACACCuCUCUGCUAAUUUGAAG...................... len:30 al:1
...........................................UUUACUGAACACCGCUCUGCUAAUUUGcAGA..................... len:31 al:1
...........................................UUUACUGAACACCGCUCUGCUAAUUU.......................... len:26 al:5
...........................................UUUACUGAACACuGCUCUGC................................ len:20 al:1
...........................................UUUACUGAACACCGCUCUGCUAAU............................ len:24 al:1
...........................................UUUACUGAACACCGCUCUGu................................ len:20 al:1
...........................................UUUACUGAACACCGCUCUGCUAAUU........................... len:25 al:4
...........................................UUUACUGAACACCGCUCUGC................................ len:20 al:2
............................................UUACUGAACACCuCUCUGCUAAUUUGA........................ len:27 al:1
............................................UUACUGAACACCGCUCUGCUAAUUUGAA....................... len:28 al:1
............................................UUACUGAACACCGCUCUGCUAAUUUGAAGAa.................... len:31 al:1
............................................UUACUGAACACCGCUCUGCUAu............................. len:22 al:1
............................................UUACUGAACACCGCUCUGCUAAUUUGAAG...................... len:29 al:13
............................................UUACUGAACACCGCUCUGCU............................... len:20 al:1
............................................UUACUGAACACCGCUCUGCUAAUUU.......................... len:25 al:4
............................................UUACUGAACACCGCUCUGCUAAUUUG......................... len:26 al:2
............................................UUACUGAACACCuCUCUGCUAAUUUGAAG...................... len:29 al:1
............................................UUACUGAACACCGCUCUGCUAAUc........................... len:24 al:1
............................................UUACUGAACACCuCUCUGCUAAUU........................... len:24 al:1
............................................UUACUGAACACCuCUCUGCUAAUUUGAA....................... len:28 al:1
............................................UUACUGAACACCGCUCUGCUAAUUUGAAGA..................... len:30 al:1
............................................UUACUGAACACCGCUCUGCUAAUUUGA........................ len:27 al:7
............................................UUACUGAACACCuCUCUGCUAAUUUGAAGAG.................... len:31 al:8
............................................UUACUGAACACCGCUCUGCUAAUUUGAAGAG.................... len:31 al:31
............................................UUACUGAACACCGCUCUGCUA.............................. len:21 al:1
............................................UUACUGAACACCGCUCUGCUAAUU........................... len:24 al:6
............................................UUACUGAACACCGCUCUGCUAAUUUGAAa...................... len:29 al:1
.............................................UACUGAACACCuCUCUGCUAAUUUGAAGAGA................... len:31 al:1
.............................................UACUGAACACCGCUCUGCUAAUUUGAAGAGA................... len:31 al:6
.............................................UACUGAACACCuCUCUGCUAAUUUGAAGAG.................... len:30 al:1
..............................................ACUGAACACCuCUCUGCUAAUUUGAAGAGA................... len:30 al:2
..............................................ACUGAACACCGCUCUGCUAAUUU.......................... len:23 al:1
..............................................ACUGAACACCGCUCUGCUAAUUUGAAGAG.................... len:29 al:1
..............................................ACUGAACACCGCUCUGCUAAUUUGAAGAGA................... len:30 al:3
...............................................CUGAACACCGCUCUGCUAAUUUGAAG...................... len:26 al:1
.................................................GAACACCGCUCUGCUAAUUUGAAG...................... len:24 al:1
.................................................GAACACCGCUCUGCUAAUUUGAAGA..................... len:25 al:1
....................................................CACCGCUCUGCUcAUUUGAAGAGA................... len:24 al:1
....................................................CACCGCUCUGCUAAUUUGAAGc..................... len:22 al:1
....................................................CACCGCUCUGCUAAUUUGAAGgGA................... len:24 al:1
....................................................CgCCGCUCUGCUAAUUUGAAGAGA................... len:24 al:1
....................................................CACCGCUCUGCUAAUcUGAAGAGA................... len:24 al:3
....................................................CACCGCUCUGCUAAUUUGAAGAGAU.................. len:25 al:2
....................................................CACCGCUCUGCUAAUUUGAA....................... len:20 al:5
....................................................CACCuCUCUGCUAAUUUGAAGAG.................... len:23 al:25
....................................................CACCuCUCUGCUAAUUUGAA....................... len:20 al:1
....................................................CACCGCUCUGCUAAUUUGAAGAGu................... len:24 al:2
....................................................CACCuCUCUGCUAAUUUGAAGA..................... len:22 al:2
....................................................CACCGCUCcGCUAAUUUGAAGAG.................... len:23 al:1
....................................................CACCGCUCUGCUAAUUUGAAa...................... len:21 al:5
....................................................CACCGCUCUGCUAAUUUGA........................ len:19 al:35
....................................................CACCGCUCUGCUAAUUUGAAGAGAUA................. len:26 al:1
....................................................CACCGCUCUGCUAAUU........................... len:16 al:1
....................................................CACCGCUCUGuUAAUUUGAAGA..................... len:22 al:1
....................................................CACCGCUCUaCUAAUUUGAAG...................... len:21 al:1
....................................................CACCGCUCUGCUAAUUUGAAuAG.................... len:23 al:1
....................................................CACCGCUCUGCUAAUUUGAAG...................... len:21 al:53
....................................................CACCGCUCUGCUgAUUUGAAGA..................... len:22 al:1
....................................................CACCuCUCUGCUAAUUUGA........................ len:19 al:3
....................................................CACCuCUCUGCUAAUUUGAAGAGA................... len:24 al:4
....................................................CACCGCUCUGCUAAUUUGAAaA..................... len:22 al:1
....................................................CACCGCUCUGCUAAUUUGAAGu..................... len:22 al:1
....................................................CACCGCUCUGCUAAUUUGAAu...................... len:21 al:1
....................................................CACuGCUCUGCUAAUUUGAAG...................... len:21 al:1
....................................................CACCGCUCUGCUAAUUUGAAGAG.................... len:23 al:40
....................................................CACCGCUCcGCUAAUUUGAAGA..................... len:22 al:2
....................................................CACCuCUCUGCUAAUUUGAAG...................... len:21 al:3
....................................................CACCGCUCUGCUAAUUUG......................... len:18 al:1
....................................................CACCGCUCUGCUAAUUUGAAGAGA................... len:24 al:125
....................................................CACCGCUCUGCUAAUUUGAAGA..................... len:22 al:78
.....................................................ACCGCUCUGCUAAUUUGA........................ len:18 al:2
.....................................................ACCGCUCUGCUAAUUUGAAG...................... len:20 al:5
......................................................CCGCUCUGCUAAUUUGAAGA..................... len:20 al:1
......................................................CCGCUCUGCUAAUUUGAAG...................... len:19 al:1
............................................................................UACAGUGUAAGAAUUUGCA len:19 al:1