Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam Location: ntLink_6:5157537-5157626 plus PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1836.ps.pdf Locus Name: Cluster_1836 UGGAAUAAUGGCUGUGCGAGUCAAAUGUUUCGGCUUGUUCCCGUUUUCGGUAACAAGCCGAAGCAUUUAUCUCUCUCAGUCGCUGGAUCU .(((.((.((((((.(.(((..(((((((((((((((((.(((....))).)))))))))))))))))..))).).)))))).))..))) (-43.00) UGGAAUAAUGGCUGUGCGAGUa.................................................................... len:22 al:1 UGGAAUAAUGGCUGUGCG........................................................................ len:18 al:1 UGGAAUuAUGGCUGUGCGAGUC.................................................................... len:22 al:204 UGGAAUAAUGGuUGUGCGAGUC.................................................................... len:22 al:2 UGGAAUuAUGGCUGUGCGA....................................................................... len:19 al:1 cGGAAUAAUGGCUGUGCGAGUC.................................................................... len:22 al:1 UGGAAUAAUGGCUGUGCGAGUC.................................................................... len:22 al:31 UGGAAUuAUGGCUGUGCG........................................................................ len:18 al:1 UGGAAUAAUaGCUGUGCGAGUC.................................................................... len:22 al:1 UGGAAUgAUGGCUGUGCGAGUC.................................................................... len:22 al:1 UGGAcUAAUGGCUGUGCGAGUC.................................................................... len:22 al:1 UGGAAUAAUGGCUGUGCGAGUu.................................................................... len:22 al:1 .GGAAUAAUGGCcGUGCGAGUC.................................................................... len:21 al:1 .GGAAUAAUGGCUGUGCGAGUC.................................................................... len:21 al:28 .GGAAUuAUGGCUGUGCGAGUC.................................................................... len:21 al:125 .GGAAUAAcGGCUGUGCGAGUC.................................................................... len:21 al:1 .GGAAUuAUGGCUGUGCGAGUCA................................................................... len:22 al:1 .GGAAUAAUGGCUGUGCGAGUu.................................................................... len:21 al:4 ..GAAUuAUGGCUGUGCGAGUC.................................................................... len:20 al:1364 ..GAAUuAUGGCUGUGCGAGU..................................................................... len:19 al:6 ..GAAUAAUGGCUGUGCGAGUa.................................................................... len:20 al:5 ..GgAUAAUGGCUGUGCGAGUC.................................................................... len:20 al:2 ..GAAUuAUGGCUGUGCGAG...................................................................... len:18 al:2 ..GAAUAAUGGCUGUGCGAGg..................................................................... len:19 al:1 ..GAAUAAUGGCUGUGCGAGUu.................................................................... len:20 al:24 ..GAAUgAUGGCUGUGCGAGUC.................................................................... len:20 al:1 ..GAgUAAUGGCUGUGCGAGUC.................................................................... len:20 al:4 ..GAAUAAUGGCUGUGCGAGU..................................................................... len:19 al:5 ..GAAUAAUGGuUGUGCGAGUC.................................................................... len:20 al:1 ..GAAUAAcGGCUGUGCGAGUC.................................................................... len:20 al:1 ..GAAUAAUGGCUGcGCGAGUC.................................................................... len:20 al:1 ..GAAUAAUGaCUGUGCGAGUC.................................................................... len:20 al:2 ..GAAUAAUGGCUGUGCGAGUg.................................................................... len:20 al:1 ..GAAUAAUGGCUGUGCGAGcC.................................................................... len:20 al:1 ..GAAUcAUGGCUGUGCGAGUC.................................................................... len:20 al:1 ..GAAUAAUGGCUGUGCGAGUC.................................................................... len:20 al:231 ..GAAUuAUGGCUGUGCG........................................................................ len:16 al:1 ...AAUAAcGGCUGUGCGAGUC.................................................................... len:19 al:2 ...AAUAAUGGCUGUGCGAGUC.................................................................... len:19 al:753 ...AAUuAUGGCUGUGCGA....................................................................... len:16 al:1 ...AAUAAUGGCUGUGuGAGUC.................................................................... len:19 al:1 ...AAUAAUGGCUGcGCGAGUC.................................................................... len:19 al:1 ...AAUgAUGGCUGUGCGAGUC.................................................................... len:19 al:1 ...AAUuAUGGCUGUGCGAGU..................................................................... len:18 al:55 ...AAUAAUGGCUGUGCGAGU..................................................................... len:18 al:9 ...AAUAAUGGCUGUGCGAGcC.................................................................... len:19 al:8 ...AAUAcUGGCUGUGCGAGUC.................................................................... len:19 al:2 ...AAUAgUGGCUGUGCGAGUC.................................................................... len:19 al:1 ...AAUAAUGGCUGUGCGAGUa.................................................................... len:19 al:20 ...gAUAAUGGCUGUGCGAGUC.................................................................... len:19 al:2 ...AAUAAUGGCUGUGCGAGUu.................................................................... len:19 al:58 ...AAUAAUGGCUGUGCGgGUC.................................................................... len:19 al:4 ...AAUAAUGGCaGUGCGAGUC.................................................................... len:19 al:1 ...AAUuAUGGCUGUGCG........................................................................ len:15 al:3 ...AAUAAUGGCUGUGCaAGUC.................................................................... len:19 al:1 ...AAUcAUGGCUGUGCGAGUC.................................................................... len:19 al:15 ...AAUAAUGGCUGUGCGAaUC.................................................................... len:19 al:1 ...AAUAAUGGCcGUGCGAGUC.................................................................... len:19 al:5 ...AAUuAUGGCUGUGCGAGUC.................................................................... len:19 al:7317 ...AAUAAUGGCUGUGCGAGUg.................................................................... len:19 al:32 ...AuUAAUGGCUGUGCGAGUC.................................................................... len:19 al:1 ....AUuAUGGCUGUGCGAGUC.................................................................... len:18 al:963 ....AUAAcGGCUGUGCGAGUC.................................................................... len:18 al:1 ....AUAAUGGCUGUGCGAGcC.................................................................... len:18 al:1 ....AUAAUGGCUGUGCGAGUu.................................................................... len:18 al:7 ....AUAAUGGCUGUGCGAGUCA................................................................... len:19 al:1 ....AUAAUGGCUGUGCGAGUg.................................................................... len:18 al:5 ....AUcAUGGCUGUGCGAGUC.................................................................... len:18 al:1 ....AUAAUGGCUGUGCGAGUC.................................................................... len:18 al:114 ....AUAAUGGCUGUGCGAGUa.................................................................... len:18 al:1 ....AUAAUGGCUGcGCGAGUC.................................................................... len:18 al:1 .....UuAUGGCUGUGCGAGUCA................................................................... len:18 al:1 .....UAAUGGCUGUGCGAGUg.................................................................... len:17 al:1 .....UAAUGGCUGUGCGAGUC.................................................................... len:17 al:3 .....UuAUGGCUGUGCGAGUC.................................................................... len:17 al:38 ......uAUGGCUGUGCGAGUC.................................................................... len:16 al:7 ......uAUGGCUGUGCGAGU..................................................................... len:15 al:2 ......AAUGGCUGUGCGAGUC.................................................................... len:16 al:3 .......AUGGCUGUGCGgGUC.................................................................... len:15 al:1 .......AUGGCUGUGCGAGUCc................................................................... len:16 al:1 .......AUGGCUGUGCGAGUCcAAUGUUUCGGC........................................................ len:27 al:1 .......AUGGCUGUGCGAGUC.................................................................... len:15 al:1 ..................AGUgAAAUGUUUCGGCUUGUUCC................................................. len:23 al:4 ..................AGUgAAAUGUUUCGGCUUGUUC.................................................. len:22 al:3 ..................AGUCAAAUGUUUCGGCUUGUUCC................................................. len:23 al:2 ....................UCcAAUGUUUCGGCUUGUUCCCGU.............................................. len:24 al:2 ....................UgAAAUGUUUCGGCUUGUUCCCG............................................... len:23 al:3 ....................UCAAAUGUUUCGGCUUGUUCCCa............................................... len:23 al:1 ....................UCAAAUGUUUCGGCUUGUUCC................................................. len:21 al:1 ....................UCcAAUGUUUCGGCUUGUUCCCG............................................... len:23 al:7 ....................UgAAAUGUUUCGGCUUGUUCC................................................. len:21 al:6 ....................UCAAAUGUUUCGGCUUGUUCCu................................................ len:22 al:1 ....................UCcAAUGUUUCGGCUUGUUCCC................................................ len:22 al:3 ....................UCcAAUGUUUCGGCUUGU.................................................... len:18 al:1 ....................UCAAAUGUUUCGGCUUGUUCCCGUU............................................. len:25 al:5 ....................UgAAAUGUUUCGGCUUGUUCCC................................................ len:22 al:2 .....................CcAAUGUUUCGGCUUGUUCCCGU.............................................. len:23 al:3 .....................aAAAUGUUUCGGCUUGUUCCCG............................................... len:22 al:1 .....................CAAAUGUUUCGGCUUGUUCCu................................................ len:21 al:2 .....................CAAAUGUUUCGGCUUGUUCCCG............................................... len:22 al:7 .....................gAAAUGUUUCGGCUUGUUCCCGU.............................................. len:23 al:3 .....................CAAAUGUUUCGGCUUGUUCC................................................. len:20 al:2 .....................CcAAUGUUUCGGCUUGUUCCCG............................................... len:22 al:4 .....................gAAAUGUUUCGGCUUGUUCCCG............................................... len:22 al:8 .....................CcAAUGUUUCGGCUUGUUCCCGUU............................................. len:24 al:3 ......................AAAUGUUUCGGCUUGUUCCCaU.............................................. len:22 al:40 ......................AAAUGUUUCGGCUUGUUCCaGUU............................................. len:23 al:1 ......................AAAUGUUUCGGCUUGUUCCCGUcU............................................ len:24 al:1 ......................AgAUGUUUCGGCUUGUUCCC................................................ len:20 al:5 ......................AAAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:660 ......................AAAUGUUUCGGCUUGUUCCaGU.............................................. len:22 al:1 ......................AAAUaUUUCGGCUUGUUCCCG............................................... len:21 al:7 ......................AAAUGUUUCGGCUUGUUCCCGUg............................................. len:23 al:4 ......................AAAUGUUUCGGCUUGUUCCCGaU............................................. len:23 al:3 ......................AAAUGUUUCGGCUUGUcC.................................................. len:18 al:3 ......................AAAUGUUUCGGCUUGUUCCCGgU............................................. len:23 al:1 ......................AAAUGUUUCGGuUUGUUCCC................................................ len:20 al:2 ......................AAAUGUUUCGGCaUGUUCC................................................. len:19 al:2 ......................AAAUGUaUCGGCUUGUUCCCG............................................... len:21 al:2 ......................AAAUGUUUCGGCUUGUc................................................... len:17 al:1 ......................AAAUGUUUCGGCUUGUcCCCGU.............................................. len:22 al:1 ......................uAAUGUUUCGGCUUGUUCCCG............................................... len:21 al:106 ......................cAAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:4187 ......................AAAUGUUUCGGCUcGUUCCCGUU............................................. len:23 al:1 ......................AcAUGUUUCGGCUUGUUCCCG............................................... len:21 al:12 ......................AAAUGUUUCGGuUUGUUCCCG............................................... len:21 al:24 ......................AAAUGUUUCGGCUUGUUCCCGUUUU........................................... len:25 al:8 ......................AAAUGUUUCGGCUUGUUg.................................................. len:18 al:1 ......................AAAUGUUUCGGCUUGUUCCCGa.............................................. len:22 al:27 ......................AAAUGUUUCGGCUUGUUCCCGUUU............................................ len:24 al:8 ......................AAAUGUUUCGGCUUGUUCCCGUUUUCGGgA...................................... len:30 al:1 ......................AAAUGUUUCGGCUUGUUCCCc............................................... len:21 al:290 ......................AAAUGUUUCGGCUUGgUCCCG............................................... len:21 al:3 ......................gAAUGUUUCGGCUUGUUC.................................................. len:18 al:4 ......................AAAUGUUUuGGCUUGUUCCCG............................................... len:21 al:18 ......................cAAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:1743 ......................AAAUGUUUCGGCUUGUUCCg................................................ len:20 al:28 ......................AAAUGUUUCGGCUUGUcCCCGUUUUCGGU....................................... len:29 al:1 ......................AAAcGUUUCGGCUUGUUCCCG............................................... len:21 al:36 ......................AAAUGUUUCGGCUaGUUCC................................................. len:19 al:1 ......................AAAUGUUgCGGCUUGUUCCCG............................................... len:21 al:6 ......................AAAUGUUUCGGCUUGUgCC................................................. len:19 al:4 ......................AAAUGUUUCGGCUUGUUCCCuUU............................................. len:23 al:18 ......................AAAUGUUUCGGCUUGUUCCCuUUU............................................ len:24 al:4 ......................AAAUGUUUCGGCUUGUUu.................................................. len:18 al:109 ......................AAAUGaUUCGGCUUGUUCCCG............................................... len:21 al:6 ......................AAAUGUUUCGGCUUGUUCC................................................. len:19 al:1934 ......................AAAUGUUaCGGCUUGUUCC................................................. len:19 al:2 ......................AAAUGUUUCGGCUUGUUCuC................................................ len:20 al:5 ......................gAAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:1 ......................AAAUGUUUCGuCUUGUUCCC................................................ len:20 al:2 ......................AAuUGUUUCGGCUUGUUCCCG............................................... len:21 al:7 ......................AAAUGUUUCGGCUUaUUCCCG............................................... len:21 al:18 ......................AAgUGUUUCGGCUUGUUCCC................................................ len:20 al:6 ......................AAAUGUUUCGGCUaGUUCCCG............................................... len:21 al:5 ......................AAAUGUUUCGGCUUGUUCCgG............................................... len:21 al:6 ......................AAAUGUUUCGGCUUGUUCCCGcU............................................. len:23 al:5 ......................AAAUGUUUCGGCUUGaUCCC................................................ len:20 al:1 ......................AAgUGUUUCGGCUUGUUCC................................................. len:19 al:6 ......................AAAUGUUUCGGCUUGcUC.................................................. len:18 al:2 ......................AAAUGUUUCGGCUUGUUCCCGUUUUu.......................................... len:26 al:2 ......................AAgUGUUUCGGCUUGUUC.................................................. len:18 al:2 ......................AAAUGUUUCGGCUUGUUCCuG............................................... len:21 al:31 ......................AAAUGUUUCGGCUUGUUCCCG............................................... len:21 al:20995 ......................AAAUGUUcCGGCUUGUUCC................................................. len:19 al:2 ......................AAAUGUUUCaGCUUGUUCCCGU.............................................. len:22 al:1 ......................AAAUGUUUuGGCUUGUUCCCGU.............................................. len:22 al:1 ......................AAAUGUUUCGGCUUGUUCCC................................................ len:20 al:2292 ......................AAAUGUUUCGGCUcGUUCC................................................. len:19 al:3 ......................AAAUGUUcCGGCUUGUUC.................................................. len:18 al:1 ......................AAAUGUUUCGGCUUGcUCCCG............................................... len:21 al:41 ......................AAAUGUUcCGGCUUGUUCCCG............................................... len:21 al:40 ......................AAAUGUUUCGGCaUGUUCCC................................................ len:20 al:1 ......................AAAUGUUUCGGCUUGUUCa................................................. len:19 al:1313 ......................AAAUGUUUCGGCUUGUcCCCGUU............................................. len:23 al:1 ......................AAAUGUUUCGGCUUGUUCCCcU.............................................. len:22 al:15 ......................AAAUGUUUCGGCUUGUUCCu................................................ len:20 al:674 ......................AAAUGUUUCGGCUcGUUCCC................................................ len:20 al:6 ......................AgAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:1 ......................AAAUGUUUCGGCUUGUUCaCG............................................... len:21 al:17 ......................AAAUGUUUCGGCUgGUUCCCGU.............................................. len:22 al:1 ......................AAAUGUUUCGGCUUGUa................................................... len:17 al:1 ......................AAAUGUUUCGGCUUGUUCCuGU.............................................. len:22 al:2 ......................AAAUGUUUCGGCUUGcUCCCGUU............................................. len:23 al:1 ......................AAAUGUUUCGGgUUGUUCCCG............................................... len:21 al:6 ......................AAAUGUUUCGGCUUuUUCCCG............................................... len:21 al:1 ......................uAAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:10 ......................AAAUGUUUCGGCUUGUUCCCa............................................... len:21 al:4588 ......................AAAUGUUUCGGCUUGcUCC................................................. len:19 al:2 ......................AAgUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:2 ......................AAAUGUUUCGGCUUGUcCCCG............................................... len:21 al:55 ......................gAAUGUUUCGGCUUGUUCCC................................................ len:20 al:6 ......................uAAUGUUUCGGCUUGUUC.................................................. len:18 al:2 ......................AAAUGUUUCGGCUUGUUCCCuU.............................................. len:22 al:15 ......................AAcUGUUUCGGCUUGUUCCCG............................................... len:21 al:19 ......................AAAUGUUUCaGCUUGUUCCCGUU............................................. len:23 al:1 ......................AAAUGUUUCGGCUcGUUCCCGU.............................................. len:22 al:3 ......................uAAUGUUUCGGCUUGUU................................................... len:17 al:1 ......................AAAUGUUUCGGCUUGUUCCa................................................ len:20 al:527 ......................AAAUGUUUCGGCUUGUUCCCGUUUa........................................... len:25 al:1 ......................AAAUGUUUCGGgUUGUUCC................................................. len:19 al:1 ......................AAAUGUUUCGGCUUGUUCCCGg.............................................. len:22 al:8 ......................gAAUGUUUCGGCUUGUUCCCG............................................... len:21 al:122 ......................AAAUGUUUCuGCUUGUUCCCG............................................... len:21 al:3 ......................AAAUGUUUCaGCUUGUUC.................................................. len:18 al:1 ......................AAAUGUgUCGGCUUGUUCCCG............................................... len:21 al:2 ......................AAAUGUUUuGGCUUGUUCC................................................. len:19 al:1 ......................AAAUGUUUCGGCUUGcUCCC................................................ len:20 al:12 ......................AAAUGUUUCGGCUUGUUa.................................................. len:18 al:64 ......................AAAgGUUUCGGCUUGUUCCCG............................................... len:21 al:1 ......................AAAUGUUUCGGCUUGUaCCCG............................................... len:21 al:4 ......................AAAUGUUUCGGCUUGUUuCCG............................................... len:21 al:23 ......................AAAUGUUUCGGCUUGUUCCCuUUUU........................................... len:25 al:3 ......................AAAUGUUUCGGCgUGUUCCCG............................................... len:21 al:1 ......................AAAUGUUUCGGCUUGUUC.................................................. len:18 al:640 ......................AAAUGUUUCGGCUUGUUCu................................................. len:19 al:475 ......................AAAUGUUUCGGCUUGUUCCCGc.............................................. len:22 al:75 ......................AAAUGUUcCGGCUUGUUCCCGUU............................................. len:23 al:1 ......................AAAUGUUUCGGCUUGUUCCCGUa............................................. len:23 al:24 ......................cAAUGUUUCGGCUUGUU................................................... len:17 al:66 ......................gAAUGUUUCGGCUUGUUCC................................................. len:19 al:14 ......................AAAUGUUUCGGCUUGUUaC................................................. len:19 al:1 ......................AAAUGUUUCGGgUUGUUCCC................................................ len:20 al:1 ......................AAcUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:2 ......................cAAUGUUUCGGCUUGUUCCCGUUUU........................................... len:25 al:53 ......................AAAUGUUcCGGCUUGUUCCC................................................ len:20 al:6 ......................AAAUGUUUCGGCUUGUU................................................... len:17 al:18 ......................AAAUGUcUCGGCUUGUUCCCGU.............................................. len:22 al:1 ......................cAAUGUUUCGGCUUGUUC.................................................. len:18 al:1528 ......................AuAUGUUUCGGCUUGUUCC................................................. len:19 al:1 ......................AAAUGUUUCGGCcUGUUCCCG............................................... len:21 al:67 ......................AAAUGUUUCGGCUUGUUCCCGUc............................................. len:23 al:25 ......................AAAUGUUUCGGCcUGUUC.................................................. len:18 al:2 ......................AAAUGUUUCGGCUUGUUCCCGUUUc........................................... len:25 al:2 ......................AAAUGUUUCGGCUUGUUCCCGUUUUCGGU....................................... len:29 al:3 ......................AAAUGUcUCGGCUUGUUCCCG............................................... len:21 al:51 ......................AAAUGUUUCGaCUUGUUCC................................................. len:19 al:2 ......................AAAUGUUUCGGCcUGUUCCC................................................ len:20 al:11 ......................AAAUGUUUCGcCUUGUUCCCG............................................... len:21 al:3 ......................AAAUGUcUCGGCUUGUUCCC................................................ len:20 al:8 ......................uAAUGUUUCGGCUUGUUCCC................................................ len:20 al:4 ......................AAAUGUUaCGGCUUGUUCCCGU.............................................. len:22 al:1 ......................AAAUGUcUCGGCUUGUUCC................................................. len:19 al:2 ......................AAAUGUUUCGaCUUGUUCCCG............................................... len:21 al:10 ......................cAAUGUUUCGGCUUGUUCCCG............................................... len:21 al:79979 ......................AAAUGUUUCGGCUUGUUCCCaUU............................................. len:23 al:4 ......................AAAUGUUUCGGCUcGUUC.................................................. len:18 al:1 ......................AcAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:1 ......................AAgUGUUUCGGCUUGUUCCCG............................................... len:21 al:60 ......................AAAUGUUUaGGCUUGUUCCCG............................................... len:21 al:4 ......................AAAUGUUUCaGCUUGUUCCCG............................................... len:21 al:18 ......................AAAUGUUcCGGCUUGUUCCCGU.............................................. len:22 al:1 ......................AAcUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:1 ......................AAAUGUUUCGGCUUGUUCCCu............................................... len:21 al:633 ......................AAAUGUUUCGGCUUGUaCC................................................. len:19 al:2 ......................AAAUGUUUCGGCUUGUUCuCG............................................... len:21 al:39 ......................AAAUGUUUCGaCUUGUUCCC................................................ len:20 al:3 ......................AAAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:228 ......................AAAUGUUUuGGCUUGUUCCC................................................ len:20 al:2 ......................AAAUGUUUCGGCUcGUUCCCG............................................... len:21 al:48 ......................AAAUGUUUCGGCUUaUUCCC................................................ len:20 al:2 ......................cAAUGUUUCGGCUUGU.................................................... len:16 al:6 ......................AAAUGUUUCGGCUUGUUuC................................................. len:19 al:3 ......................uAAUGUUUCGGCUUGUUCC................................................. len:19 al:4 ......................AcAUGUUUCGGCUUGUUCCC................................................ len:20 al:1 ......................AAAUGgUUCGGCUUGUUCCCG............................................... len:21 al:3 ......................uAAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:1 ......................AAAUGUUUCGGCcUGUUCC................................................. len:19 al:8 ......................gAAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:5 ......................AuAUGUUUCGGCUUGUUCCCG............................................... len:21 al:13 ......................AgAUGUUUCGGCUUGUUC.................................................. len:18 al:3 ......................AAAUGcUUCGGCUUGUUCCC................................................ len:20 al:2 ......................AAAUGUUUCGGCUUGU.................................................... len:16 al:2 ......................AAAUGUUUCGGCUUGUUaCCG............................................... len:21 al:3 ......................cAAUGUUUCGGCUUGUUCCC................................................ len:20 al:3608 ......................AAAUGUUUCGGCUUGaU................................................... len:17 al:1 ......................AcAUGUUUCGGCUUGUUCC................................................. len:19 al:1 ......................AAAUGUUUCGGCUUGUUCg................................................. len:19 al:30 ......................AAAUGUUUCGuCUUGUUCCCG............................................... len:21 al:3 ......................AAAUGUUUCGGCUUGUUCgC................................................ len:20 al:1 ......................AAcUGUUUCGGCUUGUUCC................................................. len:19 al:2 ......................AAAcGUUUCGGCUUGUUCC................................................. len:19 al:4 ......................AAAUGUUUCGGCUUGUUCgCG............................................... len:21 al:1 ......................AAAUGcUUCGGCUUGUUCC................................................. len:19 al:5 ......................AAAUGUUUCGGCUUGUUuCC................................................ len:20 al:3 ......................AAAUGUUgCGGCUUGUUC.................................................. len:18 al:2 ......................AAAcGUUUCGGCUUGUUCCCGUU............................................. len:23 al:2 ......................AAAUGUUUCGGCUUGUUCuCGU.............................................. len:22 al:2 ......................cAAUGUUUCGGCUUGUUCCCGUUUUCG......................................... len:27 al:2 ......................AAAUGUUUCGGaUUGUUCCCG............................................... len:21 al:2 ......................AAAUGUUUCaGCUUGUUCCC................................................ len:20 al:3 ......................AAAUGUUUCGGCUUGUUCaC................................................ len:20 al:5 ......................AgAUGUUUCGGCUUGUUCCCG............................................... len:21 al:65 ......................cAAUGUUUCGGCUUGUUCC................................................. len:19 al:3690 ......................cAAUGUUUCGGCUUGUUCCCGUUUUC.......................................... len:26 al:1 ......................AAAUGUUUCGGCUUaUUCC................................................. len:19 al:1 ......................AAAUGUUUCGGCaUGUUCCCG............................................... len:21 al:2 ......................AAcUGUUUCGGCUUGUUC.................................................. len:18 al:2 ......................AAAUGUUUCGGCUUGUcCC................................................. len:19 al:6 ......................AAAcGUUUCGGCUUGUUCCCGU.............................................. len:22 al:2 ......................AAAUGUcUCGGCUUGUUCCCGUU............................................. len:23 al:3 ......................AAAaGUUUCGGCUUGUUCCCG............................................... len:21 al:1 ......................AAAUGcUUCGGCUUGUUCCCG............................................... len:21 al:23 ......................AAAUGUUaCGGCUUGUUCCCG............................................... len:21 al:1 ......................cAAUGUUUCGGCUUGUUCCCGUUU............................................ len:24 al:124 ......................AgAUGUUUCGGCUUGUUCC................................................. len:19 al:9 ......................AAAUGUUUCuGCUUGUUCCCGU.............................................. len:22 al:2 ......................AAAUGUUUCGGCcUGUUCCCGU.............................................. len:22 al:3 ......................AAAUGUUUCGGCUUGUcCCC................................................ len:20 al:9 ......................AgAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:2 ......................AAAUGUUUCGGCUUGUUCCaG............................................... len:21 al:36 ......................AAcUGUUUCGGCUUGUUCCC................................................ len:20 al:5 ......................AAAUGcUUCGGCUUGUUCCCGU.............................................. len:22 al:1 ......................AAAUGUUUCGGCUUGUgCCCG............................................... len:21 al:2 ......................AAAUGUUUaGGCUUGUUCC................................................. len:19 al:1 ......................AAAcGUUUCGGCUUGUUCCC................................................ len:20 al:3 ......................AAAUGUUUCGGCUUGUUCCCGUUa............................................ len:24 al:2 ......................AAAUGUUUCGGCUUGUUCCuGUU............................................. len:23 al:1 .......................AAUGUUUCGGCUUGUUuC................................................. len:18 al:2 .......................AgUGUUUCGGCUUGUUCCCGUU............................................. len:22 al:2 .......................AAUGUUUCGGCUUGUUCCCuUU............................................. len:22 al:3 .......................AAUGUUUCGGCUUGUUCCCGUUU............................................ len:23 al:3 .......................AAUGUUUCGGCUUGUUCu................................................. len:18 al:31 .......................AAUGUUUCGGCUUGUgCC................................................. len:18 al:1 .......................AAUGUUUCGGCUUGUUCaC................................................ len:19 al:1 .......................AAUGUUUCGGCUUGcUCC................................................. len:18 al:1 .......................AAUGUUUCGGCUUGUUCCCGg.............................................. len:21 al:2 .......................AAUGUUUCGGCUUGUUCCCcU.............................................. len:21 al:1 .......................AAUGUUUCGGCUUGUUCCuG............................................... len:20 al:3 .......................cAUGUUUCGGCUUGUUCCCGU.............................................. len:21 al:2 .......................AAUGUUUCGGCUUGUUCCCaU.............................................. len:21 al:5 .......................AAaGUUUCGGCUUGUUCCCG............................................... len:20 al:1 .......................AAUGUUUCGGCUUGUUCCC................................................ len:19 al:120 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