Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ntLink_6:4871545-4871637 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1833.ps.pdf
Locus Name: Cluster_1833
UUCAAUAAUCUGUUGCCGACAAAGAAAGUGCUCAAAUCAUAAUAUUGUUAUGAUCAUAGCACUUUCUUUGUUGGCAACAGAUGCAGAGCCAUU
.......(((((((((((((((((((((((((...((((((((...))))))))...)))))))))))))))))))))))))........... (-48.20)
UUCAAUAAUCUGUUGCCuAC......................................................................... len:20 al:36
.UCAAUAAUCUGUUGCCuAC......................................................................... len:19 al:13
..CAAUAAUCUGUUGCCuACAAAGAAAGUGCUC............................................................ len:31 al:1
..CAAUAAUCUGUUGCCuAC......................................................................... len:18 al:8
......AAUCUGUUGCCuACAAAGAAAGU................................................................ len:23 al:1
....................AAAGAAAGUGCUCcAAUCAUAAU.................................................. len:23 al:1
....................AAAGAAAGUGCUCuAAUCAUAA................................................... len:22 al:68
....................AAAGAAAGUGCUCuAAUCAUAAU.................................................. len:23 al:8
....................AAAGAAAGUGCUCcAAUCAUAA................................................... len:22 al:5
........................................AAUAUUGUUAUGAUCAUAGCACUUUCUUUGg...................... len:31 al:1
........................................AAUgUUGUUAUGAUCAUAGCACUUUCUUUGU...................... len:31 al:1
........................................AAUAUUGUUAUGAUCAUAGCACUUUCUUUGU...................... len:31 al:8
........................................AAUAUUGUUAUGAUCAUAGCACUUUCUUUGc...................... len:31 al:1
........................................AAUAUUGUUAUGAUCgUAGCACUUUCUUUGU...................... len:31 al:1
.........................................AUAUUGUUAUGAUCAUAGCACUUUCUUUGU...................... len:30 al:6
.........................................AUAUUGUUAUGAUCAUgGCACUUUCUUUGUU..................... len:31 al:1
.........................................AUAUUGUUAUGAUCAUgGCACUUUCUUUGU...................... len:30 al:1
.........................................AUAUUGUUAUGAUCAUAGCACUUUCUUUGa...................... len:30 al:1
...............................................UUAUGAUCAUAGCACUUUCUUUG....................... len:23 al:7
................................................UAUGAUCAUAGCACUUUCUUUG....................... len:22 al:5
................................................UAUGAUCAUAGCACUUUCUUUGUU..................... len:24 al:13
................................................UAUGAUCAUAGCACUUUCUUUGc...................... len:23 al:9
................................................UAUGAUCAUAGCACUUUCUUUGUa..................... len:24 al:1
................................................UAUGAUCAUAGCACUUUCUUUGU...................... len:23 al:142
................................................UAUGAUCAUAGCACUUUCUUUGa...................... len:23 al:1
.................................................AUGAUCAUAGCACUUUCUUUGUc..................... len:23 al:6
.................................................AUGAUCAUAGCACUUUCUUUGUa..................... len:23 al:7
.................................................AUGAUCAUAGCACUUUCUUUGc...................... len:22 al:33
.................................................AUGAUCAUAGCACUUUCUUUGa...................... len:22 al:2
.................................................AUGAUCAUAGCACUUUCUUUGU...................... len:22 al:426
.................................................AUGAUCAUAGCACUUUCUUUGUU..................... len:23 al:113
.................................................AUGAUCAUAGCACUUUCUUUG....................... len:21 al:11
.................................................AUGAUCAUgGCACUUUCUUUGU...................... len:22 al:2
..................................................UGAUCAUAGCACUUUCUUUGU...................... len:21 al:17
..................................................UGAUCAUAGCACUUUCUUUGUU..................... len:22 al:9