Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ntLink_6:4847443-4847535 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1832.ps.pdf
Locus Name: Cluster_1832
UUCAAUAAUCUGUUACCAACAAAGAAAGUGCUCUAAUCAUAUUAUUGUUAUGAUCAUAGCACUUUCUUUGUUGGCAACAGAUGCAGAGCCACU
.......(((((((.(((((((((((((((((...((((((.......))))))...))))))))))))))))).)))))))........... (-40.60)
.................uACAAAGAAAGUGCUCUAAU........................................................ len:20 al:1
.................uACAAAGAAAGUGCUCUAAUC....................................................... len:21 al:3
...................CAAAGAAAGUGCUCUAAUCAUAa................................................... len:23 al:3
...................CAAAGAAgGUGCUCUAAU........................................................ len:18 al:3
...................CAAAGAAAGUGuUCUAAUCAUA.................................................... len:22 al:1
...................CAAAGAAAGUGCUCUAAUCAU..................................................... len:21 al:2
...................CAAAGAAAGUGCUCUAAUCAUA.................................................... len:22 al:30
...................CAAAGAAAGUGCUCUAAUCAUAaU.................................................. len:24 al:1
...................CAAAGAAAGUGCUCUAAUCAUu.................................................... len:22 al:2
...................CAAAGAAgGUGCUCUAAUC....................................................... len:19 al:1
...................CAAAGAAgGUGCUCUAAUCAUA.................................................... len:22 al:41
...................CAAAGAAgGUGCUCUAAUCAU..................................................... len:21 al:4
...................CAAAGAAAGUGCUCUAAU........................................................ len:18 al:4
....................AuAGAAAGUGCUCUAAUCAU..................................................... len:20 al:2
....................AgAGAAAGUGCUCUAAUCAUA.................................................... len:21 al:10
....................AAAGAAAGUGCUCUAAUCAUAUU.................................................. len:23 al:14
....................AAAGAAAGUGCUCUAAUCAUAaUA................................................. len:24 al:41
....................AAAGgAAGUGCUCUAAUCAUAUU.................................................. len:23 al:1
....................AAAGAAgGUGCUCUAAUCAUAU................................................... len:22 al:3
....................AAAGAcAGUGCUCUAAUC....................................................... len:18 al:1
....................AAAGAAAGUGCUCUAAUCAUAaUAUUGUUA........................................... len:30 al:3
....................AAAGAAAGUGCUCUA.......................................................... len:15 al:1
....................AAAGAAAGUGCUCUAAUCAUAg................................................... len:22 al:12
....................AAAGAAcGUGCUCUAAUCAU..................................................... len:20 al:1
....................AAAGAAAGUGCcCUAAUCAUA.................................................... len:21 al:1
....................AAAGAAAGUGCUCUAAUC....................................................... len:18 al:855
....................AAAGAAgGUGCUCUAAUCAUA.................................................... len:21 al:32
....................AAgGAAAGUGCUCUAAUCA...................................................... len:19 al:4
....................AAAGAAAGUGCUCUAAUCAUu.................................................... len:21 al:9
....................AAAGAAAGUGCUCUAAUCAUAaUAUUGU............................................. len:28 al:5
....................AAAGuAAGUGCUCUAAUC....................................................... len:18 al:2
....................AgAGAAAGUGCUCUAAUC....................................................... len:18 al:5
....................AAAGAAAGUGCUCUAAUCAUAaUAUUGUUAU.......................................... len:31 al:3
....................AAAGAAgGUGCUCUAAUC....................................................... len:18 al:25
....................AAAGAAAGUGCUCUAAcC....................................................... len:18 al:1
....................AAAGAAAGUGCUCUAAU........................................................ len:17 al:26
....................AAAGAAAGUGCUCUgAUCAUA.................................................... len:21 al:5
....................AAAGAAAaUGCUCUAAUCAUA.................................................... len:21 al:2
....................AAAGAcAGUGCUCUAAUCAUA.................................................... len:21 al:1
....................AAAGcAAGUGCUCUAAUCAUA.................................................... len:21 al:1
....................AAAGAAAGUGCUCUAAUCAUg.................................................... len:21 al:5
....................AAAGAAAGUGgUCUAAUCA...................................................... len:19 al:1
....................AAAGAAAGUGaUCUAAUC....................................................... len:18 al:1
....................AAAGAAAGUGgUCUAAUCAU..................................................... len:20 al:1
....................AAAGAAAGUGCUCUAAUCgUAU................................................... len:22 al:1
....................AAgGAAAGUGCUCUAAUCAU..................................................... len:20 al:12
....................AAAGAAAGUGCcCUAAUC....................................................... len:18 al:1
....................AAAGAAAGUGCUCUAAcCAUA.................................................... len:21 al:2
....................AAAGAAAGUuCUCUAAUCAUA.................................................... len:21 al:24
....................AAAGAgAGUGCUCUAAUC....................................................... len:18 al:2
....................AAAGAAAGUuCUCUAAUC....................................................... len:18 al:5
....................uAAGAAAGUGCUCUAAUCAUA.................................................... len:21 al:1
....................gAAGAAAGUGCUCUAAUC....................................................... len:18 al:8
....................AAAGAAAGUGCUCUAAUCAUAaUAUUGUU............................................ len:29 al:25
....................AAAGAAAGUGuUCUAAUCAU..................................................... len:20 al:1
....................AAAGAAAGUGgUCUAAUC....................................................... len:18 al:1
....................AgAGAAAGUGCUCUAAUCA...................................................... len:19 al:1
....................AAAGAAAGUGCUCUAAUa....................................................... len:18 al:4
....................AAAGAAAGUGCUCUcAUCA...................................................... len:19 al:1
....................AAAGAAAGUGCUCUAAUCAa..................................................... len:20 al:3
....................AAAGAAAGUGgUCUAAUCAUA.................................................... len:21 al:1
....................AAAGAAgGUGCUCUAAUCAU..................................................... len:20 al:18
....................AAAGAAAGUGCUCUAAUCAc..................................................... len:20 al:23
....................AAAGAAAGUGCUCUAAUCAUAU................................................... len:22 al:35
....................AAAGAgAGUGCUCUAAUCAU..................................................... len:20 al:8
....................AAAGAAAGUGCUCUAAUCAcA.................................................... len:21 al:14
....................gAAGAAAGUGCUCUAAUCAUA.................................................... len:21 al:2
....................gAAGAAAGUGCUCUAAU........................................................ len:17 al:2
....................AAAGAAAGUGCUCUAAUCAUAaUAUUG.............................................. len:27 al:4
....................AAAGAAAGUuCUCUAAUCAU..................................................... len:20 al:7
....................AAAGAAAGUGCUCUAAUCAUA.................................................... len:21 al:936
....................AAAGAAAGUuCUCUAAUCA...................................................... len:19 al:5
....................AAAGAAAGUGCUCUAAUCAUAaUAUU............................................... len:26 al:3
....................AAAGAAgGUGCUCUAAUCAUAUU.................................................. len:23 al:2
....................AcAGAAAGUGCUCUAAU........................................................ len:17 al:1
....................AAgGAAAGUGCUCUAAUCAUA.................................................... len:21 al:35
....................AAAGAAAGUGCUCUAAUCAUAc................................................... len:22 al:5
....................AAAGgAAGUGCUCUAAUCAU..................................................... len:20 al:3
....................AAAGAAgGUGCUCUAAUCA...................................................... len:19 al:5
....................AAAGAAcGUGCUCUAAUC....................................................... len:18 al:2
....................AAAGAgAGUGCUCUAAUCAUA.................................................... len:21 al:5
....................AAAGAAAGUGCUCUAAUCAUAUUu................................................. len:24 al:1
....................AAAGAAAGUGCUCUAgUCAU..................................................... len:20 al:1
....................AAAGAAAGUGCUCUAgUCAUA.................................................... len:21 al:1
....................AAAGAAAGUGCUCUAuUC....................................................... len:18 al:1
....................AAAGAAAGUGCUCUAAUCg...................................................... len:19 al:3
....................AAAGAAAGUGCUCUAAUCgUA.................................................... len:21 al:6
....................AAAGAAAGUGCUCUAAUCAU..................................................... len:20 al:375
....................AAgGAAAGUGCUCUAAUC....................................................... len:18 al:10
....................AAAGAAAGUGCUCUAAUCuUA.................................................... len:21 al:1
....................AAAGAAAGUGgUCUAAUCAUAU................................................... len:22 al:1
....................AAAGAAAGUGCUCUAAUCAcAU................................................... len:22 al:1
....................AAAGAAAGUGuUCUAAUC....................................................... len:18 al:1
....................AAAGAAAGcGCUCUAAUC....................................................... len:18 al:7
....................AAAGAAAGUGCUCUAgUC....................................................... len:18 al:5
....................AAAGAAAGUGCUCUAAUCA...................................................... len:19 al:142
....................AAAGAAAGUGuUCUAAUCAUA.................................................... len:21 al:1
....................AAAGgAAGUGCUCUAAUCAUA.................................................... len:21 al:5
....................AAAGAAAGUGCUCUcAUCAUA.................................................... len:21 al:1
....................AAAGAAAGUGCUCUAAUCAUAaU.................................................. len:23 al:599
....................AAAGAAAGUGCUCUAAUu....................................................... len:18 al:16
....................AAAGAAAGUGCUCUAAUuAUA.................................................... len:21 al:2
....................AAAGAAAGUGCUCUAAUCAUAUa.................................................. len:23 al:5
....................AAAGAAAGUGCUCUAAUCAUAgU.................................................. len:23 al:1
....................AAAGAAAGUGCcCUAAUCAU..................................................... len:20 al:2
....................AAAGAAAaUGCUCUAAUC....................................................... len:18 al:1
....................AAAaAAAGUGCUCUAAUCAU..................................................... len:20 al:1
....................AAAGAAAGUGCUCUgAUC....................................................... len:18 al:1
....................AAAGAAAGUGCUCUAAUCAUAa................................................... len:22 al:2491
....................AAAGAAAGUGCUCUAAUCu...................................................... len:19 al:2
....................AAAGAAAGUGCUCUAAUCAUc.................................................... len:21 al:1
....................AAAGAAAGUGCUCUAAUCAUAaUAU................................................ len:25 al:3
....................AAAGAAAGUGCgCUAAUC....................................................... len:18 al:2
....................AAAGAAAGUGCUCUAAUCAg..................................................... len:20 al:2
....................AAAGAAAGcGCUCUAAUCA...................................................... len:19 al:1
....................AAAGAAAGUGCUCUAAUCAUAUaA................................................. len:24 al:1
....................AAAGAAAGUGCUCcAAUC....................................................... len:18 al:1
....................AAAGAAAGcGCUCUAAUCAU..................................................... len:20 al:1
....................AAAGAAAGUGCUCUAAUCgU..................................................... len:20 al:4
....................AAAGAAAuUGCUCUAAUCAUA.................................................... len:21 al:2
....................AAAGAAAGUGCUCUAAUCAaA.................................................... len:21 al:1
....................AAAGcAAGUGCUCUAAUCAU..................................................... len:20 al:1
.....................AAGAAgGUGCUCUAAUCA...................................................... len:18 al:1
.....................AAGAAAGUGCUCUAAUCAUAaU.................................................. len:22 al:18
.....................AAGAAAGUGCUCUAAUCAUAa................................................... len:21 al:7
.....................AAGgAAGUGCUCUAAUCAUA.................................................... len:20 al:1
.....................AAGAAAGUGCUCUAAUCAUAaUAUUGU............................................. len:27 al:1
.....................AAGAAAGUGCUCUgAUCAU..................................................... len:19 al:1
.....................AAGAAAGUGCUCUAAUCAUAg................................................... len:21 al:1
.....................AAGAgAGUGCUCUAAUCAUAU................................................... len:21 al:1
.....................AAGAAAGUGCUCUAAUCA...................................................... len:18 al:15
.....................AgGAAAGUGCUCUAAUCA...................................................... len:18 al:2
.....................AAGAAAGUGCUCUAAUCAUA.................................................... len:20 al:12
.....................AAGAAAGUGCUCUAAUCAU..................................................... len:19 al:25
.....................AgGAAAGUGCUCUAAUCAUA.................................................... len:20 al:2
.....................AgGAAAGUGCUCUAAUCAU..................................................... len:19 al:6
.....................AAGAAAGUGCUCUAAUCAc..................................................... len:19 al:1
.....................AAGAAAGUGCUCUAAUCAcA.................................................... len:20 al:1
.....................AAGAAAGUuCUCUAAUCAU..................................................... len:19 al:1
.....................AAGAAAGUGCUCUAAcCAUA.................................................... len:20 al:2
.....................AAGAAAGUGCUCUAAUCAUAU................................................... len:21 al:1
.....................AAGAAAGUGCUCUAAUCAUAaUA................................................. len:23 al:13
......................AGAAAGUGCUCUAAUCAU..................................................... len:18 al:1
......................AGAAAGUGCcCUAAUCAUA.................................................... len:19 al:2
......................AGAAAGUGCUCUAAUCAUAaU.................................................. len:21 al:3
......................AGAAAGUGCUCUAAUCAUA.................................................... len:19 al:4
......................AGAAAGUGCUCUAAUC....................................................... len:16 al:1
......................AGAAAGUGCUCUAAUCAUAaUA................................................. len:22 al:1
......................AGAAAGUGCUCUAAUCAUAa................................................... len:20 al:4
.......................GAAAGUGCUCUAAUCA...................................................... len:16 al:1
........................AAAGUGCUCUAAUCAUAaUA................................................. len:20 al:1
..........................................UAUUGUUAUGAUCAUAGCACUUUCUUUGUUu.................... len:31 al:1
..........................................cAUUGUUAUGAUCAUAGCACUUUCUUUGU...................... len:29 al:3
..........................................UAUUGUUAUGAUCAUAGCACUUUCUUUGUc..................... len:30 al:1
..........................................UAUUGUUAUGAUCAUAGCACUUUCUUUGUa..................... len:30 al:7
..........................................UAUUGUUAUGAUCAUAGCACUUUCUUUGU...................... len:29 al:13
..........................................UAUUGUUAUGAUCAUAGCACUUUCUUUGc...................... len:29 al:1
..........................................UAUUGUUAUGAUCAUAGCACUUUCUUUGUU..................... len:30 al:11
..........................................cAUUGUUAUGAUCAUAGCACUUUCUU......................... len:26 al:2
.............................................UGUUAUGAUCAUAGCACUUUCUUUGU...................... len:26 al:2
..............................................GUUAUGAUCAUAGCACUUUCUUUG....................... len:24 al:1
...............................................UUAUGAUCAUAGCACUUU............................ len:18 al:3
...............................................UUAUGAUCAUAGCACUUUCUUUGc...................... len:24 al:2
...............................................UUAUGAUCAUAGCACUUUC........................... len:19 al:1
...............................................UUAUGAUCAUAGCACUUUCUUUa....................... len:23 al:17
...............................................UUAUGAUCAUAGCACUUUCUUUc....................... len:23 al:1
...............................................UUAUGAUCAUAGCACUUUCUUcG....................... len:23 al:1
...............................................UUAUGAUCAUAGuACUUUCUUUG....................... len:23 al:2
...............................................UUAUGAUCAUAGCACcUUCUUUG....................... len:23 al:1
...............................................UUAcGAUCAUAGCACUUUCUUUGUU..................... len:25 al:1
...............................................UUAUGAUCAUAGCACUUUCUU......................... len:21 al:7
...............................................UUAUGAUCAUAGCACUUUCcUUG....................... len:23 al:2
...............................................UUAUGAUCAUAaCACUUUCUUUG....................... len:23 al:1
...............................................UUAUGAUCAUAGCACUUUCU.......................... len:20 al:1
...............................................UUAUGAUCAUAGCACUUUCUUUGa...................... len:24 al:1
...............................................UUAUGAUCAUAGCACUUUCUUUGU...................... len:24 al:16
...............................................UUAUGAUCAUgGCACUUUCUUUG....................... len:23 al:4
...............................................UUAUGAUCAUAGCACUcUCUUUG....................... len:23 al:1
...............................................UUAUGAUCAUAGCACUUUCUUUGUa..................... len:25 al:1
...............................................UUAUaAUCAUAGCACUUUCUUU........................ len:22 al:1
...............................................UUAcGAUCAUAGCACUUUCUUUG....................... len:23 al:2
...............................................UUAUGAUCAUAGCACUUUCUUUGg...................... len:24 al:1
...............................................UUAUGAUCAUAGCACUUUCc.......................... len:20 al:1
...............................................UcAUGAUCAUAGCACUUUCUUUGU...................... len:24 al:1
...............................................UUAUGAUCAUAGuACUUUCUUUGU...................... len:24 al:1
...............................................UUAUGAUCAUAGCACUUUCUUUGgU..................... len:25 al:1
...............................................UUAUGAUCAUAGCACUUUCUc......................... len:21 al:2
...............................................UUAUGAUCAUAGCACUUUCUUUG....................... len:23 al:360
...............................................UUAUGAUCAUAGCACUUUCUUU........................ len:22 al:11
...............................................UUAUGAUCAUAGCACUUUCUUg........................ len:22 al:2
...............................................UcAUGAUCAUAGCACUUUCUUUGUU..................... len:25 al:1
................................................UAaGAUCAUAGCACUUUCU.......................... len:19 al:2
................................................UuUGAUCAUAGCACUUUCUUUGUU..................... len:24 al:1
................................................UAUGAUCAUAGCACUUUuUUUGU...................... len:23 al:1
................................................UAUGAUCAUAGCACcUUCUUUG....................... len:22 al:1
................................................UcUGAUCAUAGCACUUUCUUUGU...................... len:23 al:1
................................................cAUGAUCAUAGCACUUUCUUUG....................... len:22 al:2
................................................UAUGAUCAUAGCACUUUa........................... len:18 al:1
................................................UAUGAUCAUAGCACUUUCUUUGa...................... len:23 al:78
................................................UAUGAUCAUgGCACUUUCUUUGUU..................... len:24 al:1
................................................UAUGAUCAUAGCACUcUCUUUG....................... len:22 al:1
................................................cAUGAUCAUAGCACUUUCUUUGU...................... len:23 al:9
................................................UAUGAUCAUAGCAuUUUCUUUGU...................... len:23 al:2
................................................UAUGAUCAUAGCACUcUCUUUGUU..................... len:24 al:3
................................................UAUGAUCAUAGCACUUgCUUUGU...................... len:23 al:1
................................................UAUGAUCAUAGgACUUUCUUUGU...................... len:23 al:2
................................................UAUGAUCAUAuCACUUUCUUUGU...................... len:23 al:3
................................................UAUGAUCAUAaCACUUUCUUUGU...................... len:23 al:4
................................................UAUGAUCAUAGCACUUUCUUUa....................... len:22 al:19
................................................UAUGAUCAUAGCACUUUCUUUGUUc.................... len:25 al:1
................................................UAUGAUCAUAGCACUUUCcUUGU...................... len:23 al:26
................................................UAUGAUCAUAGCACUUUCUcUGU...................... len:23 al:10
................................................UAUGAUCcUAGCACUUUCUUUG....................... len:22 al:1
................................................UAUGAUCAUAGCACUUUCUUUGUUa.................... len:25 al:26
................................................UAUGAUCAUAGCACUUUCUUUGUUGu................... len:26 al:1
................................................UAUGAUCAUAGCACUUUCgUUGUU..................... len:24 al:1
................................................UAUGAUCAUAGCACUUUCcUUGUU..................... len:24 al:2
................................................UAUGAUCAUAGCACUUUCUg......................... len:20 al:1
................................................UAUGAUCAUAGCACUUUCUUUGaU..................... len:24 al:3
................................................gAUGAUCAUAGCACUUUCUUUGU...................... len:23 al:2
................................................UAUGAUCAUAGCACUUcCUUUGUU..................... len:24 al:2
................................................UAUGAUCAUAGCAaUUUCUUUGU...................... len:23 al:1
................................................UAUGAUCcUAGCACUUUCUUUGU...................... len:23 al:3
................................................UAUGAUCuUAGCACUUUCUUUGU...................... len:23 al:3
................................................UAUGAUCAUAGCACUUUC........................... len:18 al:17
................................................UAUGAUCAUgGCACUUUCUUUG....................... len:22 al:3
................................................UAUGAUCAUAGCACUUUCU.......................... len:19 al:10
................................................UAUGAUCAUAcCACUUUCUUUGU...................... len:23 al:1
................................................UAUGAUCAUAGCACUUUCUUc........................ len:21 al:7
................................................UAUGAUCAUAGCACUUUCUgUGU...................... len:23 al:1
................................................UAUGcUCAUAGCACUUUCUUUGU...................... len:23 al:9
................................................UAUGAcCAUAGCACUUUCUUUGUU..................... len:24 al:3
................................................UAUGAUCAUAGCACUUUCUaUGU...................... len:23 al:2
................................................UAUGAUCAUAGCACUUUCUUa........................ len:21 al:1
................................................UAUGgUCAUAGCACUUUCUUUGUU..................... len:24 al:2
................................................UcUGAUCAUAGCACUUUCUUUGUU..................... len:24 al:1
................................................UAUGAUCAUAGCACUUUCUUUuU...................... len:23 al:3
................................................UAUGAcCAUAGCACUUUCUUUGU...................... len:23 al:14
................................................UAUGAUCAUAGCACUUUCcUUG....................... len:22 al:2
................................................UAUGAUCAUAGCACUUUCUUUGUUu.................... len:25 al:5
................................................UAUGgUCAUAGCACUUUCUUUG....................... len:22 al:3
................................................UAUGAUCAUAGCACUUcCUUUGU...................... len:23 al:14
................................................UAUGAUCAUAGCACUgUCUUUGU...................... len:23 al:1
................................................UAaGAUCAUAGCACUUUCUUUGU...................... len:23 al:2
................................................UAUGcUCAUAGCACUUUCUUUGUU..................... len:24 al:1
................................................cAUGAUCAUAGCACUUUCUUUGUU..................... len:24 al:1
................................................UAcGAUCAUAGCACUUUCUUUGU...................... len:23 al:8
................................................UAcGAUCAUAGCACUUUCUUUG....................... len:22 al:3
................................................UAUGAUCAUAGCACUUUCUUUGcU..................... len:24 al:6
................................................UAUGAUCAUAGCACUUUCUUU........................ len:21 al:52
................................................UAUGAUCAUAGuACUUUCUUUG....................... len:22 al:1
................................................UAUGAUCAUAGCACUUUCUcUGUU..................... len:24 al:1
................................................UAUGAUCAcAGCACUUUCUUUGU...................... len:23 al:19
................................................UAUGAUCAUcGCACUUUCUUUGU...................... len:23 al:2
................................................UAUaAUCAUAGCACUUUCUUUGU...................... len:23 al:6
................................................UAUGAUCAcAGCACUUUCUUUG....................... len:22 al:2
................................................UAUGAUCAUAGCACUUaCUUUGU...................... len:23 al:1
................................................UAUGAUCAUAGCACUUUCUUaGU...................... len:23 al:1
................................................UAUGAUCAUAGCACUUUCUUUGg...................... len:23 al:56
................................................UAUGAUCAUAGCACaUUCUUUGU...................... len:23 al:1
................................................UAUGAUCAUAGCACUUcCUUUG....................... len:22 al:1
................................................UAcGAUCAUAGCACUUUCUU......................... len:20 al:1
................................................UAUGuUCAUAGCACUUUCUUUGU...................... len:23 al:1
................................................UAUGAUCgUAGCACUUUCUUUGU...................... len:23 al:9
................................................UAUGAUCAUAGCgCUUUCUUUGUU..................... len:24 al:1
................................................UAUGAUCAUAGCACUUUCUUUGUg..................... len:24 al:5
................................................UAUGAUCAUAGCACcUUCUUU........................ len:21 al:1
................................................UAcGAUCAUAGCACUUUCUUUGUU..................... len:24 al:3
................................................UgUGAUCAUAGCACUUUCUUUGU...................... len:23 al:22
................................................UAUGAUCAUAGCuCUUUCUUUGU...................... len:23 al:2
................................................UgUGAUCAUAGCACUUUCUUUGUU..................... len:24 al:1
................................................UAUGAUCAUAGCgCUUUCUUUG....................... len:22 al:1
................................................UAUGAUCAUAGCcCUUUCUUUGU...................... len:23 al:1
................................................UAUGAUCAUAGCACUUUCc.......................... len:19 al:3
................................................UAUGAUCAUAGCgCUUUCUU......................... len:20 al:2
................................................UAUGAUCAUAGCACUUUCUUUGc...................... len:23 al:618
................................................UAUGAUCAUAGCACUUUCcU......................... len:20 al:1
................................................UAUGAUCAUgGCACUUUCUUUGU...................... len:23 al:49
................................................UAUGAUCAUAGCACUUUCUU......................... len:20 al:43
................................................UAUGAUCAUAGCACUUUCUUUGUU..................... len:24 al:725
................................................UAUGAUCAUAGCACUUUCUUgGU...................... len:23 al:1
................................................UAUGAUCAUAGCACUUUCUUUG....................... len:22 al:498
................................................UAUGAUCAUAGCACUUUCUUUu....................... len:22 al:3
................................................UAUGAUCAUAGCACUUUCUUUGU...................... len:23 al:5600
................................................UAUGAUCAUAGCACUUUCUcUG....................... len:22 al:2
................................................UAUGAUCgUAGCACUUUCUUUG....................... len:22 al:3
................................................UAUGAUCAUAGuACUUUCUUUGUU..................... len:24 al:3
................................................UAUGAUCAUAGCACUaUCUUUGU...................... len:23 al:2
................................................UAUGAUCAUAGCACUUUCUUUGUa..................... len:24 al:194
................................................UAUGAUCAcAGCACUUUCUUUGUU..................... len:24 al:1
................................................UAUGAUCAUAGCACUUUCUUUaU...................... len:23 al:1
................................................UAUGAUCAUAGCACUUUCUUcGU...................... len:23 al:8
................................................UAUGAUCAUAGCACUcUCUUUGU...................... len:23 al:15
................................................gAUGAUCAUAGCACUUUCUUUG....................... len:22 al:2
................................................UAUGAUCAUAGCgCUUUCUUUGU...................... len:23 al:16
................................................UAUGAUCAUAGCACcUUCUUUGUU..................... len:24 al:4
................................................UuUGAUCAUAGCACUUUCUUUGU...................... len:23 al:3
................................................UAUGAUCAUAGCACUUUCUUcG....................... len:22 al:2
................................................UAUGAUCAUAGCACUUUCgU......................... len:20 al:2
................................................aAUGAUCAUAGCACUUUCUUUGU...................... len:23 al:2
................................................UAUGAUCAUAGCACUUUCUUUGUc..................... len:24 al:73
................................................UAUGAUCAUAGCACcUUCUUUGU...................... len:23 al:21
................................................UAUGgUCAUAGCACUUUCUUUGU...................... len:23 al:17
................................................UAUGAUCAUAGuACUUUCUUUGU...................... len:23 al:8
.................................................AUGAUCAcAGCACUUUCUU......................... len:19 al:2
.................................................AUGAUCAUcGCACUUUCUU......................... len:19 al:1
.................................................AaGAUCAUAGCACUUUCUUUGUU..................... len:23 al:1
.................................................AUGAUCAaAGCACUUUCUUUGUU..................... len:23 al:1
.................................................AUGAUCAUAGCACUUUuUU......................... len:19 al:3
.................................................AUGAUCAUAGCACcUUCUUU........................ len:20 al:1
.................................................AUGAUCAUAGCgCUUUCUUU........................ len:20 al:1
.................................................AUGcUCAUAGCACUUUCUUU........................ len:20 al:2
.................................................AUGAUCAUAGCACaUUCUUU........................ len:20 al:1
.................................................AUGAUCAUAGCACaUUCUUUGU...................... len:22 al:3
.................................................AUGAUCAUAGCACUUUCUU......................... len:19 al:132
.................................................AUGAUCAUAGCACUUUCUUUa....................... len:21 al:50
.................................................AUGAUCAUAGCAuUUUCUUUGU...................... len:22 al:5
.................................................AcGAUCAUAGCACUUUC........................... len:17 al:3
.................................................AUGAUCAUAGCACcUUCUUUG....................... len:21 al:3
.................................................AUGAUCAUAGCACUcUCUUUGU...................... len:22 al:27
.................................................AUGAUCAUAuCACUUUCUUUGUU..................... len:23 al:1
.................................................AUGAUCAcAGCACUUUCUUUGUU..................... len:23 al:6
.................................................AUGAUCAUAGCACUUUCUUUaU...................... len:22 al:6
.................................................AUGAUCAUAGCACUUUCUcU........................ len:20 al:1
.................................................gUGAUCAUAGCACUUUCUUUGUU..................... len:23 al:19
.................................................AUGAUCAUAGCAaUUUCUUUGU...................... len:22 al:1
.................................................AUGAUCAUuGCACUUUCUUUGUU..................... len:23 al:1
.................................................gUGAUCAUAGCACUUUCUUUG....................... len:21 al:2
.................................................AUGAUCgUAGCACUUUCUUUGUU..................... len:23 al:8
.................................................AcGAUCAUAGCACUUUCUUUGUU..................... len:23 al:1
.................................................AUGAUCAUAGCACUUUCUUUGa...................... len:22 al:194
.................................................AUGAUCcUAGCACUUUCUUUGU...................... len:22 al:9
.................................................AUGAUCAcAGCACUUUCUUUGU...................... len:22 al:28
.................................................AUGAUCAUAGCACUUcCUUUGU...................... len:22 al:34
.................................................AUGAUCcUAGCACUUUCUUUGUU..................... len:23 al:5
.................................................AUGAUCAUAGCACUUUCcUUGUU..................... len:23 al:7
.................................................AUGAUCAUAGCACUUUCUUc........................ len:20 al:13
.................................................AUGAUCAUgGCACUUUCUUU........................ len:20 al:4
.................................................AUGAUCAUAGCACUUUCUg......................... len:19 al:1
.................................................AUGAUCAUAGCACUUaCUUUGU...................... len:22 al:1
.................................................AUGAUCAUAGCACUUUCUUUcU...................... len:22 al:2
.................................................AUGAUCAUAGCACUUUCUUUuUU..................... len:23 al:2
.................................................AUGAUuAUAGCACUUUCUUUGU...................... len:22 al:4
.................................................AUGAUCAUAGCACUUUCUUUGg...................... len:22 al:136
.................................................AUGAUCAUAGCACUUUuUUUGUU..................... len:23 al:3
.................................................AUGAUCgUAGCACUUUCUUUG....................... len:21 al:2
.................................................uUGAUCAUAGCACUUUCUUUG....................... len:21 al:2
.................................................AUGAUCAUAGCACUUUuUUUGU...................... len:22 al:6
.................................................AUGAUCAUAGCACUUUCaUUGU...................... len:22 al:1
.................................................AUGAgCAUAGCACUUUCUUUGU...................... len:22 al:1
.................................................AUGcUCAUAGCACUUUCUUUGUU..................... len:23 al:4
.................................................AUGAaCAUAGCACUUUCUUUGUU..................... len:23 al:3
.................................................AUGAUCAUAGCACUUUCUUUGUUu.................... len:24 al:43
.................................................AUGgUCAUAGCACUUUCUUUGUU..................... len:23 al:7
.................................................AUGAUCAUAGCACUUUCcU......................... len:19 al:1
.................................................AUGAUCAUuGCACUUUCUUUGU...................... len:22 al:4
.................................................AUGAUCAUAGCACUUUCgUUGUU..................... len:23 al:1
.................................................AUGAUCAUAGCACUUUCUUUGgU..................... len:23 al:7
.................................................AUGAUCAUAGCACUU............................. len:15 al:1
.................................................AUGAUCAUAaCACUUUCUUUGU...................... len:22 al:9
.................................................AUaAUCAUAGCACUUUCUUUGU...................... len:22 al:10
.................................................AUGuUCAUAGCACUUUCUUUGU...................... len:22 al:6
.................................................AUGAUCAUAGCACUUUCUUUG....................... len:21 al:689
.................................................AUGAUCAUAGCACUUUCUUg........................ len:20 al:4
.................................................AUGAUCAUAGCACUUUCUUUGUa..................... len:23 al:551
.................................................AUGAUCAUAGCACUUUCUa......................... len:19 al:4
.................................................AUGAUCAUAGCACUaUCUUUGUU..................... len:23 al:2
.................................................AUGAUCAUAGCACUUUCUUa........................ len:20 al:3
.................................................AUGAUCAUAGCACUUUCUUUGcU..................... len:23 al:34
.................................................AUGAUCAUAGCgCUUUCUUUGUU..................... len:23 al:12
.................................................AUGAUCAUAGCACUUUCa.......................... len:18 al:3
.................................................AUuAUCAUAGCACUUUCUUUGU...................... len:22 al:1
.................................................AUGAUCAUAGuACUUUCUUUGUU..................... len:23 al:3
.................................................AUGAUCAUAGCACUUUCUUUGUU..................... len:23 al:3240
.................................................uUGAUCAUAGCACUUUCUUUGUU..................... len:23 al:2
.................................................gUGAUCAUAGCACUUUCUUUGU...................... len:22 al:77
.................................................AUGAUCAUAGCACUUUCc.......................... len:18 al:11
.................................................AUGAUCuUAGCACUUUCUUUGUU..................... len:23 al:2
.................................................AgGAUCAUAGCACUUUCUUUG....................... len:21 al:1
.................................................AUGAUCAUAGCACUUUCU.......................... len:18 al:60
.................................................AUGgUCAUAGCACUUUCUUUG....................... len:21 al:2
.................................................gUGAUCAUAGCACUUUCUUU........................ len:20 al:1
.................................................AUGAUCAUAGCACgUUCUUU........................ len:20 al:1
.................................................AUGAUCAUAGCACUcUCUUUGUU..................... len:23 al:20
.................................................AUGAUCAUAGCACUUUuUUUG....................... len:21 al:1
.................................................AUGAUCAaAGCACUUUCUUUGU...................... len:22 al:8
.................................................cUGAUCAUAGCACUUUCUUUGUU..................... len:23 al:4
.................................................AUGcUCAUAGCACUUUCUUUGU...................... len:22 al:19
.................................................AUGAUCAUAGCACUUcCUUUG....................... len:21 al:1
.................................................AUGAUCAUAGCACgUUCUUUGU...................... len:22 al:1
.................................................AUGAUCAUAGCACUUUCUUU........................ len:20 al:169
.................................................AUGAUCAUAGCACUUU............................ len:16 al:14
.................................................AUGAcCAUAGCACUUUCUUUGU...................... len:22 al:33
.................................................AUGAUCAUAGCACUUUCUUUGc...................... len:22 al:1462
.................................................AUGAUCAUAGCACUgUCUUU........................ len:20 al:1
.................................................AUGAUCAUAGCACUUUCUcUGUU..................... len:23 al:2
.................................................AUGgUCAUAGCACUUUCUUUGU...................... len:22 al:56
.................................................AUGAUCAUAGCACUUUCUUcG....................... len:21 al:7
.................................................AUGAUCAUgGCACUUUCUUUG....................... len:21 al:16
.................................................AUGAUCAUAGCACUUUCUUUaUU..................... len:23 al:2
.................................................AUGAUCAUAGuACUUUCUUUGU...................... len:22 al:12
.................................................AUGAUCAUAGCACUUUCUaUGU...................... len:22 al:2
.................................................AUGAUCAUgGCACUUUCUUUGUU..................... len:23 al:25
.................................................AUGAUCAUAGaACUUUCUUUGU...................... len:22 al:1
.................................................AUGAUCAUAGCACUUUCcUUGU...................... len:22 al:56
.................................................AUGAUCAUAGCACUUUCUcUG....................... len:21 al:2
.................................................AUGAUCAcAGCACUUUCUUU........................ len:20 al:1
.................................................AUGAUCgUAGCACUUUCUUUGU...................... len:22 al:41
.................................................AUGAUCAUAGCACUUUCUUcGUU..................... len:23 al:6
.................................................AUGAcCAUAGCACUUUCUUUGUU..................... len:23 al:8
.................................................AUGAUuAUAGCACUUUCUU......................... len:19 al:1
.................................................AUGAUCAUAGCACUUUCUUUGUaG.................... len:24 al:2
.................................................AUGAaCAUAGCACUUUCUUUGU...................... len:22 al:1
.................................................AUGAUCAUAGCACUUcCUUUGUU..................... len:23 al:16
.................................................AUGAUCAUAGCACUUUCUUUu....................... len:21 al:4
.................................................AUGAUCAUAGCACUUUCcUUG....................... len:21 al:2
.................................................AaGAUCAUAGCACUUUCUUUGU...................... len:22 al:2
.................................................AUGAUCuUAGCACUUUCUUUGU...................... len:22 al:1
.................................................AUGuUCAUAGCACUUUCUUUGUU..................... len:23 al:2
.................................................AUGAUCAUAGCACUUUC........................... len:17 al:6
.................................................AUGAUCAUAGCACUUUCUUUuU...................... len:22 al:5
.................................................AUGAUCAcAGCACUUUCUUUG....................... len:21 al:2
.................................................AUGAUCAUAGCgCUUUCUUUG....................... len:21 al:3
.................................................AgGAUCAUAGCACUUUCUUUGU...................... len:22 al:4
.................................................AUGAUaAUAGCACUUUCUUUGU...................... len:22 al:1
.................................................AUGAUCAUAGCACUUUCUc......................... len:19 al:10
.................................................AUGAUCAUAGCACUUUCcUU........................ len:20 al:1
.................................................AUGAcCAUAGCACUUUCUUUG....................... len:21 al:2
.................................................AUGAUCAUAaCACUUUCUUUGUU..................... len:23 al:2
.................................................AUGAUCAUAGCACUUaCUUUGUU..................... len:23 al:1
.................................................AUGAUCAUAGCACUUUCUUgGUU..................... len:23 al:1
.................................................AUGAUCAUcGCACUUUCUUUGU...................... len:22 al:9
.................................................AUGAUCAUAGCACUUUCUUUGUUc.................... len:24 al:1
.................................................AUGAUCAUgGCACUUUCUUUGU...................... len:22 al:209
.................................................AUGAUCAUAGCACcUUCUUUGU...................... len:22 al:56
.................................................AUaAUCAUAGCACUUUCUUUGUU..................... len:23 al:5
.................................................AUGAUCAUAGCACUUUCUUUGUc..................... len:23 al:355
.................................................AUGAUCAUgGCACUUUCU.......................... len:18 al:2
.................................................AUGAUCAUAGCACUUUCUUUGUUGc................... len:25 al:2
.................................................uUGAUCAUAGCACUUUCUUUGU...................... len:22 al:9
.................................................AUGAUCAUAGCACUUUCUgUGU...................... len:22 al:15
.................................................AUGAUCAgAGCACUUUCUUUGU...................... len:22 al:1
.................................................AUGAUCAUAGCACUUUCUUaGU...................... len:22 al:1
.................................................AUGAUCAUAGCcCUUUCUUUGU...................... len:22 al:4
.................................................AUGAUCAUAGCACcUUCUUUGUU..................... len:23 al:8
.................................................AUGAUCAUAGCACUUUCUUUGUUa.................... len:24 al:64
.................................................AUGAUCAUAGCACUaUCUUUGU...................... len:22 al:1
.................................................AUGAUCAUAGCACUUgCUUUGU...................... len:22 al:3
.................................................AUGAUCAUAuCACUUUCUUUGU...................... len:22 al:2
.................................................AUGAUCAUAGCACUUUCUUUGU...................... len:22 al:12930
.................................................cUGAUCAUAGCACUUUCUUUGU...................... len:22 al:7
.................................................AUGAUCAUAGCACUUUCUUcGU...................... len:22 al:27
.................................................AUGAUCAUAGCgCUUUCUUUGU...................... len:22 al:38
.................................................AUuAUCAUAGCACUUUCUUUGUU..................... len:23 al:1
.................................................AUGAUCAUAGCACUUUCUUUGUg..................... len:23 al:19
.................................................AUGAUCAUAGCACUUcCUUU........................ len:20 al:1
.................................................AUGAUCAUAGgACUUUCUUUG....................... len:21 al:1
.................................................AUGAUCAUAGCACUUUCUcUGU...................... len:22 al:24
.................................................AUGAUCAUAGCcCUUUCUUUGUU..................... len:23 al:2
.................................................AUGAUCAUAGCACUUUCUUUc....................... len:21 al:2
..................................................UGAUCAUAGCACUUU............................ len:15 al:1
..................................................UGAUCAUAGCACUcUCUUUGU...................... len:21 al:3
..................................................UGAUCAUAGCACUUUCUUUaU...................... len:21 al:3
..................................................UGAUCAUAGCACcUUCUUUGU...................... len:21 al:2
..................................................UGAUCAUAGCACUUUCUcUGU...................... len:21 al:2
..................................................UGAUCAUAGCACUUUCUUUGUUG.................... len:23 al:5
..................................................UGAUCAUAGCACUUUCUUUGUUa.................... len:23 al:8
..................................................UGAUCAaAGCACUUUCUUUGUU..................... len:22 al:1
..................................................UGAUCgUAGCACUUUCUUUGU...................... len:21 al:2
..................................................UGAUCAUAGuACUUUCUUUGU...................... len:21 al:3
..................................................UGgUCAUAGCACUUUCUUUGU...................... len:21 al:4
..................................................UGAUCAUAGCACUUUCUUcGUU..................... len:22 al:1
..................................................UGAUCcUAGCACUUUCUUUGU...................... len:21 al:1
..................................................UGgUCAUAGCACUUUCUUUGUU..................... len:22 al:2
..................................................UGAaCAUAGCACUUUCUUUGU...................... len:21 al:1
..................................................UGAUCAUAGCACUUUCUUUGUU..................... len:22 al:521
..................................................UGAUCAUAGCACgUUCUUUGU...................... len:21 al:1
..................................................UGAUCAUAGCACUUUCUUUGa...................... len:21 al:13
..................................................UGAUCAUAGCACUUUCUcUGUU..................... len:22 al:2
..................................................UGAUCAUAGCACUUUCUaUGU...................... len:21 al:1
..................................................UGAUCAUAGCACUcUCUUUGUU..................... len:22 al:2
..................................................UGAUCAUAGCACUUUCUUU........................ len:19 al:10
..................................................UGAUCAUAGCACUUUCUUUGUUu.................... len:23 al:11
..................................................UGAUCAUAGCACUUUCUUcGU...................... len:21 al:3
..................................................UGAUCAUAGCACUUUCcUUGU...................... len:21 al:8
..................................................UGAUCAUAGCACUUUCUUUGUg..................... len:22 al:7
..................................................UGAUCAUAcCACUUUCUUUG....................... len:20 al:1
..................................................UGAUCAUAGCACUcUCUU......................... len:18 al:1
..................................................UGAUCAcAGCACUUUCUUUGU...................... len:21 al:1
..................................................UGAUuAUAGCACUUUCUUUGU...................... len:21 al:1
..................................................UGAUCAUAGCACUUUCUUUGUc..................... len:22 al:58
..................................................UGAUCAUAGCACUUUCUU......................... len:18 al:9
..................................................UGAUCAUAGCACUUUCUUUa....................... len:20 al:2
..................................................UGAUCAUAGCcCUUUCUUUGU...................... len:21 al:1
..................................................UGAcCAUAGCACUUUCUUUGU...................... len:21 al:6
..................................................UGAUCAUAGCACUUaCUUUGUU..................... len:22 al:1
..................................................UGAUCAUcGCACUUUCUUUGU...................... len:21 al:1
..................................................UGAUCgUAGCACUUUCUUUGUU..................... len:22 al:1
..................................................UGAUCAUAGCACUUUCUUUGc...................... len:21 al:108
..................................................UGAUCAUAGCACUUcCUUUGUU..................... len:22 al:1
..................................................UGAcCAUAGCACUUUCUUUGUU..................... len:22 al:3
..................................................UGcUCAUAGCACUUUCUUU........................ len:19 al:1
..................................................UGAUCcUAGCACUUUCUUUGUU..................... len:22 al:2
..................................................UGAUCAUAuCACUUUCUUUG....................... len:20 al:1
..................................................UGAUCAUAGCcCUUUCUUUGUU..................... len:22 al:2
..................................................UGAUCAUAGCAuUUUCUUUGU...................... len:21 al:2
..................................................UGAUCAUAGuACUUUCUU......................... len:18 al:1
..................................................UGAUCAUAGCgCUUUCUUUGUU..................... len:22 al:2
..................................................UGAUCAUAGCACUUUCUUUG....................... len:20 al:67
..................................................UGAUCAUAGCACUUUCUUUGUa..................... len:22 al:80
..................................................UGAUCAUgGCACUUUCUUUGU...................... len:21 al:40
..................................................UGAUCAUAGCACUUUCUUUGcU..................... len:22 al:3
..................................................aGAUCAUAGCACUUUCUUUGUU..................... len:22 al:1
..................................................UGAUCAUAGCACUUUCUUUuU...................... len:21 al:1
..................................................UGAUCAUgGCACUUUCUUUGUU..................... len:22 al:6
..................................................UGAUCAUAaCACUUUCUUUGUU..................... len:22 al:1
..................................................UGAUCAUAGCACUUUCUUUGU...................... len:21 al:964
..................................................UGAUCAUAGCgCUUUCUUUGU...................... len:21 al:5
..................................................UGAUCAUAGCACUUcCUUUGU...................... len:21 al:1
..................................................UGAUuAUAGCACUUUCUUUGUU..................... len:22 al:1
..................................................UGAUCAUAGCACUUUCcUUGUU..................... len:22 al:1
..................................................UGAUCAUAGCACUUUCUUUGg...................... len:21 al:19
...................................................GAUCAUAGCACUUUCUUUGUU..................... len:21 al:11
...................................................GAUCAUAGCACUUUCUUUGc...................... len:20 al:2
...................................................GAUCAUAGCACUUUaUUUGU...................... len:20 al:1
...................................................GAUCAUAGCACUUUCUUUGU...................... len:20 al:25
...................................................GAUCAUAGCACUUUCUUUuU...................... len:20 al:1
...................................................GAUCAUAGCACUUUCUUUGUa..................... len:21 al:1
...................................................GAUCAUAGCACUUUCUUUGUUa.................... len:22 al:2
...................................................GAUCAcAGCACUUUCUUUGU...................... len:20 al:1
...................................................GAUCAUAGCACUUUCUUUG....................... len:19 al:4
...................................................GAUCAUAGCACUUUC........................... len:15 al:1
....................................................AUCAUgGCACUUUCUUUG....................... len:18 al:1
....................................................AUCAUAGCACUUUCUUUGUa..................... len:20 al:1
.....................................................UCAUAGCACUUUCUUUGUUGa................... len:21 al:1
.......................................................AUAGCACUUUCUUUGU...................... len:16 al:1
.......................................................................UGGCAAuAGAUGCAGAGC.... len:18 al:2
.......................................................................UGGCAACAGAUGCAGAGC.... len:18 al:2