Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ntLink_6:7263486-7263580 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_1795.ps.pdf
Locus Name: Cluster_1795
CAGAGAUUUUGCAUUGCAUUUUUCAAAUUAGGAAGGGAGGUGUUUUACUGAACACCGCUCUGCUAAUUUGAAGAGAUACAGUGUAAGAAUUUGCA
((((..((((((((((..(((((((((((((..((((.(((((((....))))))).)))).)))))))))))))...)))))))))).)))).. (-37.30)
CAGAGAUUUUGCAUUGCAUc........................................................................... len:20 al:6
CAGgGAUUUUGCAUUGCAUU........................................................................... len:20 al:1
CAGAGAUUUUGCAUUGCAUa........................................................................... len:20 al:1
CAGAGAUUUUGCAUUGCAUU........................................................................... len:20 al:47
.AGAGAUUUUGCAUUGCAUc........................................................................... len:19 al:1
.AGAGAUUUUGCAUUGCAUU........................................................................... len:19 al:130
.AGAGAUUUUGCAUUGCAgU........................................................................... len:19 al:1
.AGAGAUUUUGCAUUGCAUa........................................................................... len:19 al:1
.AGAGAUUUcGCAUUGCAUU........................................................................... len:19 al:2
.AGAGAUUUUGCAUUGCAUg........................................................................... len:19 al:1
.AGAGAUUUUGCAcUGCAUU........................................................................... len:19 al:1
.AGgGAUUUUGCAUUGCAUU........................................................................... len:19 al:3
.AGAGAcUUUGCAUUGCAUU........................................................................... len:19 al:2
..GAGAUUUUGCAUUGCAUU........................................................................... len:18 al:20
..GAGAUUUUGCAUUGCAUc........................................................................... len:18 al:3
................CAUUUUUCAAAUUAGGAAGGGAGGUGU.................................................... len:27 al:1
..................UUUUUCAAAUUAGGAAGGGAGGUGU.................................................... len:25 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGUc................................................... len:25 al:2
...................UUUUCAcAUUAGGAAGGGAGGUGU.................................................... len:24 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGUUa.................................................. len:26 al:1
...................UUUUCAAAUUAGGAAGGGAGG....................................................... len:21 al:3
...................UUUUCAAAUUAGGAAGGGAGGa...................................................... len:22 al:2
...................UUUUCAAAUUAGGAAGGGAGGUa..................................................... len:23 al:4
...................UUUUCAAAUUAGGAAGGGA......................................................... len:19 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGUUc.................................................. len:26 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGcUU.................................................. len:26 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGUU................................................... len:25 al:20
...................UUUUCAAAUcAGGAAGGGAGGUGUU................................................... len:25 al:2
...................UUUUCAAAUUAGGAAGGGAGGUGg.................................................... len:24 al:1
...................UUUUCAAAUUAGGAAGGGAGu....................................................... len:21 al:1
...................cUUUCAAAUUAGGAAGGGAGGUGUU................................................... len:25 al:1
...................UUUUCAAgUUAGGAAGGGAGGUG..................................................... len:23 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGc.................................................... len:24 al:7
...................UUUUCAAAUUAGGAAGGGAG........................................................ len:20 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGUa................................................... len:25 al:5
...................UUUUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:26 al:8
...................UUUUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:27 al:2
...................UUUUCAAAUUAGGAAGGGAGGUG..................................................... len:23 al:18
...................UUUUCAAAUUAGGAAGGGAGGU...................................................... len:22 al:5
...................UUUUCAAAUUAGGAAGGGAGGc...................................................... len:22 al:2
...................UUUUCAAAUUAGGAAGGGAGGUc..................................................... len:23 al:1
...................UUUUCAAAUUAGGAAGGGAGGUuUU................................................... len:25 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGU.................................................... len:24 al:39
...................UUUUCAAAUUAGGAAGGGAGGUGUaUU................................................. len:27 al:1
...................UUUUCAAAUUAGGAAGGGAGGUuU.................................................... len:24 al:1
...................UUUUCAAAUUAGGAAGGGAGGUaUUU.................................................. len:26 al:1
....................UUUCAAAUUAGGgAGGGAGGUGU.................................................... len:23 al:4
....................UUUCAAAUUAGGAAGGGAuGUGUU................................................... len:24 al:2
....................UUUCAAAUUAGGAAGGGAaGUGUUU.................................................. len:25 al:1
....................UUUCAAAgUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGuGGUGUU................................................... len:24 al:2
....................UUUCAAAUUAGGAAGGGAGGUGUUUg................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAGGUGcUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAGGUGaU................................................... len:24 al:4
....................UUUCAAAUUAGGAAGGGAGGUGUUUUAu............................................... len:28 al:5
....................UUUCAAAUUAGGAAGaGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAcUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UcUCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:9
....................UUUCAAAUUAGGAAGGGAu........................................................ len:19 al:2
....................UUUCAAAUUAGGAAGGGAGGUGUUUaA................................................ len:27 al:2
....................UUUCgAAUUAGGAAGGGAGGUGU.................................................... len:23 al:3
....................UUUCAAAUUAGGAAGGGgGGUGUU................................................... len:24 al:12
....................UUUCAAAUUAGGAAGGGcGGUGUUU.................................................. len:25 al:1
....................UUUCcAAUUAGGAAGGGAGGU...................................................... len:21 al:1
....................UUUCAgAUUAGGAAGGGAGGU...................................................... len:21 al:2
....................gUUCAAAUUAGGAAGGGAGGUGU.................................................... len:23 al:1
....................UUUCAAAUUAGGAAGGGAGGUuU.................................................... len:23 al:3
....................UUUCAAAUUAGGAAGGGAGGUGUUUUACU.............................................. len:29 al:1
....................UUUCAAAUcAGGAAGGGAG........................................................ len:19 al:2
....................UUUCAAAUUAGGAAGGGAGGUGa.................................................... len:23 al:18
....................UUUCAAAUUAGGAuGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAuUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGGUGgU................................................... len:24 al:15
....................UUUCAAAUUAGGAAGGGAGGUGUUaUAC............................................... len:28 al:2
....................UUUCAAAUUAGGAAGGGAGGUGUaUU................................................. len:26 al:3
....................UUUCAAAUUAGGAAGGGAGGUaU.................................................... len:23 al:3
....................UUUCAAAUUAGGAAGGcAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGgGGUGUUUU................................................. len:26 al:1
....................UUUCAAAaUAGGAAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUc................................................... len:24 al:353
....................UUUCAAAUUAGGAAGGGAGGUGUcU.................................................. len:25 al:4
....................UUUCAAAUUAGGcAGGGAGGUGUU................................................... len:24 al:2
....................UUUCAAAUcAGGAAGGGAGGUGUU................................................... len:24 al:5
....................UUUCAAAUUAGGAcGGGAGGUGUU................................................... len:24 al:3
....................UUUCAAAUUAGGAAGGGAGGUGUg................................................... len:24 al:34
....................UUUCAAAUUAGGAAGGGAGGcGUU................................................... len:24 al:8
....................UUUCAAAUUAGGAAGGGAGGUGUUc.................................................. len:25 al:153
....................UUUCgAAUUAGGAAGGGAGGUGUU................................................... len:24 al:10
....................UUUCAAAUUcGGAAGGGAGGUGUU................................................... len:24 al:3
....................UUUCAAAUUAGGAAGGaAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUUc................................................. len:26 al:11
....................UUUCAAAUUAGGAAGGGAGGUGUUUUuC............................................... len:28 al:2
....................UUUCAAAUUAGGAAGGGAGGUGUaU.................................................. len:25 al:9
....................UUUCAAAUUAGaAAGGGAGGUG..................................................... len:22 al:1
....................UUUuAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:2
....................UUUCAAAUUAGGAAGGGAGaUGUUU.................................................. len:25 al:1
....................UUUCAAAcUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUcCAAAUUAGGAAGGGAGGUGU.................................................... len:23 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUa................................................... len:24 al:69
....................UUUCAAAUUAGGAAGGaAGGUG..................................................... len:22 al:1
....................UUUCAAAUUAGGAAGGGcGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGAGGUGU.................................................... len:23 al:706
....................UUUCAAAUUAGGAAGGGAGGUGc.................................................... len:23 al:72
....................UUUCAAAUUAGGgAGGGAGG....................................................... len:20 al:1
....................UUUCAAAUUcGGAAGGGAGGUGUUU.................................................. len:25 al:4
....................UUUCAAAUUAGGAAGGGAGGgGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGG....................................................... len:20 al:94
....................aUUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUuGGAAGGGAGGUGUU................................................... len:24 al:2
....................UUUCcAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUUgA................................................ len:27 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUUUu................................................ len:27 al:42
....................UUUCAAAUUAGGAAGGGA......................................................... len:18 al:59
....................UUUCAAAUUAGGAAGGGAGGgGU.................................................... len:23 al:2
....................UUUCAAAUUAGGAAGGGAGaUGUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAGGUGgUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGgGGU...................................................... len:21 al:2
....................UUUCAAAUUAGGAAGGGAGGUGcUU.................................................. len:25 al:9
....................UUUCAAAUUAGGAAGGGAGcUGU.................................................... len:23 al:2
....................UUUCAAAUUAGGgAGGGAGGUGUUU.................................................. len:25 al:10
....................UUUCAAAUUgGGAAGGGAGGUGUUU.................................................. len:25 al:6
....................UUUCAAAUUAGGAAGGGAGGUuUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGuAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUuGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGgAGGGAGGUGUU................................................... len:24 al:7
....................UUUCAAAUUAGGcAGGGAG........................................................ len:19 al:1
....................UUUCAAAUUAGGAAGGGAG........................................................ len:19 al:107
....................UUUCAAAUUAGGAAGaGA......................................................... len:18 al:1
....................UUUCAAAUUAGGgAGGGAG........................................................ len:19 al:2
....................UUUuAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:2
....................UUUCAAAUUAGGAAGGGAGGUa..................................................... len:22 al:19
....................UUUCAAAUUAGuAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAgUUAGGAAGGGAGGUGU.................................................... len:23 al:1
....................UUUCAAAUUAGGAAaGGAGGUGUU................................................... len:24 al:2
....................UUUCAAAUUAGGAAGGGgGG....................................................... len:20 al:1
....................UUcCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:9
....................UUUCgAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:8
....................UUUCAAAUUAGGuAGGGAGGUGUUU.................................................. len:25 al:2
....................UUUCAAAUUAGGAAGGGAGGa...................................................... len:21 al:4
....................UUUCAAgUUAGGAAGGGAGGUGUU................................................... len:24 al:6
....................UUUCAAAUUAGGAAGGGAaGUGUU................................................... len:24 al:3
....................UUUCAAAUUAGGAgGGGAGGU...................................................... len:21 al:1
....................UUUCAAAUUgGGAAGGGAGGUGUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAGaUGUU................................................... len:24 al:6
....................UUcCAAAUUAGGAAGGGAGGUG..................................................... len:22 al:1
....................UUUCAAAUUAGGAAGGGgGGUGU.................................................... len:23 al:3
....................UUUCAAAUUAGGAgGGGAGGUGUU................................................... len:24 al:17
....................UUUCAgAUUAGGAAGGGAGGUGUU................................................... len:24 al:15
....................UUUCAAAUUAGGAAuGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAcUAGGAAGGGAGGUGU.................................................... len:23 al:1
....................cUUCAAAUUAGGAAGGGA......................................................... len:18 al:2
....................UUUCAAAUUAGGAAGGGuGGUGU.................................................... len:23 al:2
....................UUUCAAAUUAGGAAGGGAGa....................................................... len:20 al:17
....................UUUCAAAUUAGGAAGGGAGGU...................................................... len:21 al:234
....................UUUCAAAUUAGGAAGGGAGGcGUUU.................................................. len:25 al:3
....................UUUCAAAUUAGGAAGGGAGGUGUUa.................................................. len:25 al:372
....................UUUCAAAUUAGGAAGGGAGGUuUU................................................... len:24 al:5
....................UUUCAAAUUAGGAAGGGAGGUGUUcU................................................. len:26 al:5
....................UUUCAAAUUAGGuAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUg.................................................. len:25 al:10
....................UUUCAAAUUAGGAAGGG.......................................................... len:17 al:2
....................UUUCAAAUUAGGAAGGGuGGUGUUUU................................................. len:26 al:2
....................UUcCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:18
....................UUUCAAcUUAGGAAGGGAGGUG..................................................... len:22 al:1
....................UUUCAAAUUAGGAAGGGAGGUu..................................................... len:22 al:8
....................UUUCAAAUUAGGgAGGGAGGUGUUUU................................................. len:26 al:1
....................UUUCgAAUUAGGAAGGGAGGU...................................................... len:21 al:1
....................UcUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:1
....................UaUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:1
....................UUUCcAAUUAGGAAGGGAGGUGUU................................................... len:24 al:5
....................UUUCAAAUUAGGAAGaGAGGUG..................................................... len:22 al:1
....................UUUCAAAUUgGGAAGGGAGGUGUU................................................... len:24 al:13
....................UUUCAAAcUAGGAAGGGAGGUGUU................................................... len:24 al:8
....................UUUCAAAUUAGGAAGGGAGu....................................................... len:20 al:12
....................UUUCAAAUUgGGAAGGGAGGU...................................................... len:21 al:2
....................UUUCAAAUUAGGAAGGGg......................................................... len:18 al:1
....................UUUCAAAUUAGGAgGGGAGG....................................................... len:20 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUUUA................................................ len:27 al:18
....................UUUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:297
....................UUUCAAAUUAGGAAGGGAGGUGg.................................................... len:23 al:6
....................UUUCAAAUUAGGAAGGGgGGUGUUU.................................................. len:25 al:6
....................UUUCAAAUUAGGAAGGGAGGUGUgUU................................................. len:26 al:1
....................UcUCAAAUUAGGAAGGGAGGUGU.................................................... len:23 al:3
....................cUUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:13
....................UUUCAAAUUAGGAAGuGAGGU...................................................... len:21 al:2
....................cUUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:2
....................UUUCAAAUUAGGAAGGGAGGUGUgU.................................................. len:25 al:3
....................UUUCAAAUUAGGcAGGGAGGUGUUUU................................................. len:26 al:3
....................UUUCAAAUUAGGAAGGaAGGUGUU................................................... len:24 al:3
....................UUUCAAAUUgGGAAGGGAGGUGU.................................................... len:23 al:1
....................UUUCAuAUUAGGAAGGGAG........................................................ len:19 al:1
....................UUUCAAuUUAGGAAGGGAGGUGU.................................................... len:23 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:4428
....................UUUCAAcUUAGGAAGGGAGGUGUU................................................... len:24 al:8
....................UUUCAAAUUAGGAAGGGAa........................................................ len:19 al:4
....................UUUCAAAUUcGGAAGGGAGGUGU.................................................... len:23 al:3
....................UUUCAAAUUAGGAAGGGAGGUGUUUUc................................................ len:27 al:5
....................UUUCAAAUUAGGAcGGGAGG....................................................... len:20 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUaUA................................................ len:27 al:31
....................UUUCAgAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:4
....................UUUCAcAUUAGGAAGGGAGG....................................................... len:20 al:1
....................UcUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:6
....................UUUCAgAUUAGGAAGGGAGGUGU.................................................... len:23 al:1
....................UUUCAAAUUAGGAAGGGAGGUG..................................................... len:22 al:203
....................UUUCAAAUUAGGAcGGGAGGU...................................................... len:21 al:1
....................UUUCAAAUUAGGAAaGGAG........................................................ len:19 al:1
....................UUUCAgAUUAGGAAGGGAGGUG..................................................... len:22 al:1
....................UUUCAAAUUAGGAAGGGAGGg...................................................... len:21 al:4
....................UUUCAAAUUAGGAAGGGAGGUaUUU.................................................. len:25 al:1
....................cUUCAAAUUAGGAAGGGAGGUGU.................................................... len:23 al:6
....................UUUCAAAUUAGGAAGGuAGGUGUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAGGc...................................................... len:21 al:32
....................UUUCAAAUUAGGAAGaGAGGUGUU................................................... len:24 al:5
....................UaUCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAgUUAGGAAGGGAGGUGUUU.................................................. len:25 al:5
....................aUUCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGaAAGGGAGGUGUU................................................... len:24 al:2
....................UUUCAAAUUAGGAAGGGAGGUGUUaU................................................. len:26 al:109
....................UUUCAAAUUAGGAAGGGAGGUGcU................................................... len:24 al:51
....................UUUCgAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:1
....................UUUCAAAUcAGGAAGGGAGGUGUUU.................................................. len:25 al:3
....................UUUCAAAUUAGGAAGGGAGGUc..................................................... len:22 al:3
....................UUUCAAAUUAGGcAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAcAUUAGGAAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGAGGUGgUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUUa................................................. len:26 al:88
....................cUUCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:23
....................UUUCAAAUUAGGAAGGGAGGUaUU................................................... len:24 al:3
....................UUUCAAAUUAGGAgGGGAGGUGUUU.................................................. len:25 al:2
....................UUcCAAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1882
.....................UUCAAAUUAGGAAGGGAGGUGUUUUA................................................ len:26 al:1
.....................UUCAAAUUcGGAAGGGAGGUGUU................................................... len:23 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUUa.................................................. len:24 al:2
.....................UUCAAAUUAGGAAGGGAGGUGUU................................................... len:23 al:43
.....................UUCAAAUUAGGAAGGGAGGUGUUaU................................................. len:25 al:1
.....................UUCAAAUUAGGAAGGGAaGUGUU................................................... len:23 al:1
.....................UUCcAAUUAGGAAGGGAGGUGUU................................................... len:23 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:24 al:40
.....................UUCAAAUUAGGAAGGGAGGU...................................................... len:20 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUc................................................... len:23 al:2
.....................UUCAAAUUAGGAAGGGAGGUGUUc.................................................. len:24 al:1
.....................UUCAAAUUAGGAAGGGAGGUGU.................................................... len:22 al:3
.....................UUCAAAUUAGGAAGGGAGGcGUUU.................................................. len:24 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUUUUu................................................ len:26 al:2
.....................UUCAAAUUAGGAAuGGAGGUGUU................................................... len:23 al:1
.....................UUCAAAUUAGGAAGcGAGGUGUU................................................... len:23 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUa................................................... len:23 al:1
.....................UUCAAAUUAGGAAGGGAGGUGgU................................................... len:23 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUUaUA................................................ len:26 al:2
.....................UUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:25 al:5
.....................UUCAAAUUAGGAAGGGAGGUGUUUa................................................. len:25 al:1
......................UCAAAUUAGGAAGGGAGGUGUU................................................... len:22 al:3
......................UCAAAUUAGGAAGGGAGGU...................................................... len:19 al:1
......................UCAAAUUAGGAAGGGAGGUGUc................................................... len:22 al:1
......................UCAAAUUAGGAAGGGAGGUGUUUU................................................. len:24 al:1
.......................CAAAUUAGGAAGGGAGGUGUUU.................................................. len:22 al:2
.......................CAAAUUAGGAAGGGAGG....................................................... len:17 al:1
.......................CAAAUUAGGAAGGGAGGUGU.................................................... len:20 al:1
.......................CAAAUUAGGAAGGGAGGU...................................................... len:18 al:1
.......................CAAAUUAGGgAGGGAGGUGUUU.................................................. len:22 al:1
.......................CAAAUUAGGAAGGGAGGUGUUUU................................................. len:23 al:3
.......................CAAAUUAGGAAGGGAGGUGUU................................................... len:21 al:1
........................AAAUUAGGAAGGGAGGUGUU................................................... len:20 al:4
........................AAAUUAGGAAGGGAGGUGU.................................................... len:19 al:1
........................AAAUUAGGAAGGGAGGUGUUUU................................................. len:22 al:1
........................AAAUUAGGAAGGGAGGUGUUU.................................................. len:21 al:2
........................AAAUUAGGAAGGGAGGcGUU................................................... len:20 al:1
........................AAAUUAGGAAGGGAGGUGUUUUu................................................ len:23 al:1
........................AAAUUAGGAAGGGAGGUGUc................................................... len:20 al:1
........................AAAUUAGGAAGGGAGGUGUUa.................................................. len:21 al:1
.........................AAUUAGGAAGGGAGGUGU.................................................... len:18 al:1
.........................AAUUAGGAAGGGAGGUGUUU.................................................. len:20 al:2
..........................AUUAGGAAGGGAGGUGUUU.................................................. len:19 al:3
...........................UUAGGAAGGGAGGUGUUU.................................................. len:18 al:1
.........................................GUUUUACUGAACACCGCUCUGCUAAUU........................... len:27 al:2
.........................................GUUUUACUGAACACCGCUCUGu................................ len:22 al:1
.........................................GUUUUACUGAACACCGCUCUGCUAAUUU.......................... len:28 al:2
.........................................GUUUUACUGAACACCGCUCUGC................................ len:22 al:2
.........................................GUUUUACUGAACACCGCUCUGCUA.............................. len:24 al:2
.........................................GUUUUACUGAACACCGCUCUGCUAAUUUGAA....................... len:31 al:2
..........................................UUUUACUGAACACCGCUCUGu................................ len:21 al:1
...........................................UUUACUGAACACCGCUCUGCUAAUUUGcAGA..................... len:31 al:1
...........................................UUUACUGAACACCGCUCUGCUAAUUUGAAG...................... len:30 al:4
...........................................UUUACUGAACACCGCUCUGCUAAUUUGA........................ len:28 al:3
...........................................UUUACUGAACACCGCUCUGCUAAU............................ len:24 al:1
...........................................UUUACUGAACACCGCUCUGu................................ len:20 al:1
...........................................UUUACUGAACACCGCUCUGCUAAUUU.......................... len:26 al:4
...........................................UUUACUGAACACCGCUCUGCUAAUU........................... len:25 al:4
...........................................UUUACUGAACACCGCUCUGC................................ len:20 al:2
...........................................UUUACUGAACACCuCUCUGCUAAUUUGAAG...................... len:30 al:1
...........................................UUUACUGAACACuGCUCUGC................................ len:20 al:1
............................................UUACUGAACACCGCUCUGCUAu............................. len:22 al:1
............................................UUACUGAACACCGCUCUGCUAAUUUG......................... len:26 al:2
............................................UUACUGAACACCGCUCUGCUAAUc........................... len:24 al:1
............................................UUACUGAACACCGCUCUGCUAAUUUGAAGAG.................... len:31 al:29
............................................UUACUGAACACCGCUCUGCUAAUUU.......................... len:25 al:3
............................................UUACUGAACACCGCUCUGCUAAUU........................... len:24 al:5
............................................UUACUGAACACCGCUCUGCU............................... len:20 al:1
............................................UUACUGAACACCGCUCUGCUAAUUUGAAGAa.................... len:31 al:1
............................................UUACUGAACACCuCUCUGCUAAUUUGAA....................... len:28 al:1
............................................UUACUGAACACCGCUCUGCUAAUUUGAAGA..................... len:30 al:1
............................................UUACUGAACACCuCUCUGCUAAUUUGAAGAG.................... len:31 al:3
............................................UUACUGAACACCGCUCUGCUAAUUUGA........................ len:27 al:7
............................................UUACUGAACACCuCUCUGCUAAUU........................... len:24 al:1
............................................UUACUGAACACCGCUCUGCUAAUUUGAA....................... len:28 al:1
............................................UUACUGAACACCGCUCUGCUA.............................. len:21 al:1
............................................UUACUGAACACCGCUCUGCUAAUUUGAAG...................... len:29 al:13
............................................UUACUGAACACCGCUCUGCUAAUUUGAAa...................... len:29 al:1
.............................................UACUGAACACCGCUCUGCUAAUUUGAAGAGA................... len:31 al:6
..............................................ACUGAACACCGCUCUGCUAAUUU.......................... len:23 al:1
..............................................ACUGAACACCuCUCUGCUAAUUUGAAGAGA................... len:30 al:1
..............................................ACUGAACACCGCUCUGCUAAUUUGAAGAGA................... len:30 al:2
..............................................ACUGAACACCGCUCUGCUAAUUUGAAGAG.................... len:29 al:1
...............................................CUGAACACCGCUCUGCUAAUUUGAAG...................... len:26 al:1
.................................................GAACACCGCUCUGCUAAUUUGAAG...................... len:24 al:1
.................................................GAACACCGCUCUGCUAAUUUGAAGA..................... len:25 al:1
....................................................CACCGCUCUGCUgAUUUGAAGA..................... len:22 al:1
....................................................CACCGCUCUGCUAAUUUGAAGAGAU.................. len:25 al:2
....................................................CACCGCUCUGCUAAUUUGAA....................... len:20 al:4
....................................................CACCGCUCUGCUAAUUUGA........................ len:19 al:33
....................................................CACCGCUCUGCUAAUUUGAAuAG.................... len:23 al:1
....................................................CACCuCUCUGCUAAUUUGAA....................... len:20 al:1
....................................................CACCGCUCUGCUAAUUUGAAGAGu................... len:24 al:2
....................................................CACCuCUCUGCUAAUUUGAAGAGA................... len:24 al:3
....................................................CgCCGCUCUGCUAAUUUGAAGAGA................... len:24 al:1
....................................................CACCGCUCUGCUAAUUUGAAGu..................... len:22 al:1
....................................................CACCuCUCUGCUAAUUUGA........................ len:19 al:2
....................................................CACCGCUCUGCUAAUUUGAAG...................... len:21 al:50
....................................................CACCGCUCcGCUAAUUUGAAGA..................... len:22 al:2
....................................................CACCGCUCUGCUAAUUUGAAu...................... len:21 al:1
....................................................CACCGCUCUGuUAAUUUGAAGA..................... len:22 al:1
....................................................CACCuCUCUGCUAAUUUGAAG...................... len:21 al:3
....................................................CACCGCUCUGCUAAUUUGAAaA..................... len:22 al:1
....................................................CACCGCUCUGCUAAUUUGAAGAGAUA................. len:26 al:1
....................................................CACCGCUCcGCUAAUUUGAAGAG.................... len:23 al:1
....................................................CACCGCUCUGCUAAUUUGAAGAGA................... len:24 al:120
....................................................CACCGCUCUGCUAAUUUGAAGAG.................... len:23 al:40
....................................................CACCGCUCUGCUAAUUUGAAGA..................... len:22 al:76
....................................................CACCGCUCUGCUcAUUUGAAGAGA................... len:24 al:1
....................................................CACCuCUCUGCUAAUUUGAAGAG.................... len:23 al:11
....................................................CACCuCUCUGCUAAUUUGAAGA..................... len:22 al:1
....................................................CACCGCUCUGCUAAUUUGAAGc..................... len:22 al:1
....................................................CACCGCUCUGCUAAUUUG......................... len:18 al:1
....................................................CACCGCUCUaCUAAUUUGAAG...................... len:21 al:1
....................................................CACuGCUCUGCUAAUUUGAAG...................... len:21 al:1
....................................................CACCGCUCUGCUAAUUUGAAa...................... len:21 al:5
....................................................CACCGCUCUGCUAAUUUGAAGgGA................... len:24 al:1
....................................................CACCGCUCUGCUAAUU........................... len:16 al:1
....................................................CACCGCUCUGCUAAUcUGAAGAGA................... len:24 al:3
.....................................................ACCGCUCUGCUAAUUUGAAG...................... len:20 al:5
......................................................CCGCUCUGCUAAUUUGAAGA..................... len:20 al:1
......................................................CCGCUCUGCUAAUUUGAAG...................... len:19 al:1
............................................................................UACAGUGUAAGAAUUUGCA len:19 al:1