Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ntLink_6:5157537-5157626 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_1764.ps.pdf
Locus Name: Cluster_1764
UGGAAUAAUGGCUGUGCGAGUCAAAUGUUUCGGCUUGUUCCCGUUUUCGGUAACAAGCCGAAGCAUUUAUCUCUCUCAGUCGCUGGAUCU
.(((.((.((((((.(.(((..(((((((((((((((((.(((....))).)))))))))))))))))..))).).)))))).))..))) (-43.00)
UGGAAUgAUGGCUGUGCGAGUC.................................................................... len:22 al:1
UGGAAUuAUGGCUGUGCGA....................................................................... len:19 al:1
UGGAcUAAUGGCUGUGCGAGUC.................................................................... len:22 al:1
UGGAAUuAUGGCUGUGCGAGUC.................................................................... len:22 al:204
UGGAAUAAUGGCUGUGCGAGUu.................................................................... len:22 al:1
UGGAAUAAUGGCUGUGCGAGUC.................................................................... len:22 al:22
UGGAAUuAUGGCUGUGCG........................................................................ len:18 al:1
UGGAAUAAUaGCUGUGCGAGUC.................................................................... len:22 al:1
.GGAAUAAUGGCUGUGCGAGUu.................................................................... len:21 al:4
.GGAAUuAUGGCUGUGCGAGUC.................................................................... len:21 al:125
.GGAAUuAUGGCUGUGCGAGUCA................................................................... len:22 al:1
.GGAAUAAcGGCUGUGCGAGUC.................................................................... len:21 al:1
.GGAAUAAUGGCUGUGCGAGUC.................................................................... len:21 al:11
..GAAUuAUGGCUGUGCGAGU..................................................................... len:19 al:6
..GAAUuAUGGCUGUGCG........................................................................ len:16 al:1
..GAAUcAUGGCUGUGCGAGUC.................................................................... len:20 al:1
..GAAUAAUGGCUGUGCGAGUg.................................................................... len:20 al:1
..GAAUAAUGGCUGUGCGAGUa.................................................................... len:20 al:1
..GAAUuAUGGCUGUGCGAG...................................................................... len:18 al:2
..GAAUAAUGGCUGUGCGAGUC.................................................................... len:20 al:121
..GAAUAAUGGCUGUGCGAGU..................................................................... len:19 al:4
..GAgUAAUGGCUGUGCGAGUC.................................................................... len:20 al:3
..GAAUgAUGGCUGUGCGAGUC.................................................................... len:20 al:1
..GAAUAAUGaCUGUGCGAGUC.................................................................... len:20 al:1
..GAAUAAUGGCUGUGCGAGg..................................................................... len:19 al:1
..GAAUAAUGGCUGUGCGAGUu.................................................................... len:20 al:16
..GAAUuAUGGCUGUGCGAGUC.................................................................... len:20 al:1364
..GgAUAAUGGCUGUGCGAGUC.................................................................... len:20 al:1
...AAUAAUGGCUGUGCGAGUa.................................................................... len:19 al:17
...AAUuAUGGCUGUGCGAGU..................................................................... len:18 al:55
...AAUAcUGGCUGUGCGAGUC.................................................................... len:19 al:1
...AAUAAUGGCUGcGCGAGUC.................................................................... len:19 al:1
...AAUAAUGGCUGUGCGAGUC.................................................................... len:19 al:386
...AuUAAUGGCUGUGCGAGUC.................................................................... len:19 al:1
...AAUAAUGGCUGUGCGAGUg.................................................................... len:19 al:32
...AAUuAUGGCUGUGCGAGUC.................................................................... len:19 al:7317
...AAUcAUGGCUGUGCGAGUC.................................................................... len:19 al:14
...AAUAAcGGCUGUGCGAGUC.................................................................... len:19 al:1
...AAUAAUGGCcGUGCGAGUC.................................................................... len:19 al:1
...AAUAAUGGCaGUGCGAGUC.................................................................... len:19 al:1
...AAUAAUGGCUGUGCGAGU..................................................................... len:18 al:6
...AAUAAUGGCUGUGCaAGUC.................................................................... len:19 al:1
...AAUAAUGGCUGUGCGAGUu.................................................................... len:19 al:40
...AAUuAUGGCUGUGCG........................................................................ len:15 al:3
...AAUAAUGGCUGUGCGAaUC.................................................................... len:19 al:1
...AAUAAUGGCUGUGCGAGcC.................................................................... len:19 al:8
...AAUAgUGGCUGUGCGAGUC.................................................................... len:19 al:1
...AAUuAUGGCUGUGCGA....................................................................... len:16 al:1
...AAUAAUGGCUGUGCGgGUC.................................................................... len:19 al:2
....AUuAUGGCUGUGCGAGUC.................................................................... len:18 al:963
....AUAAUGGCUGUGCGAGUu.................................................................... len:18 al:5
....AUAAUGGCUGUGCGAGUa.................................................................... len:18 al:1
....AUAAUGGCUGUGCGAGUg.................................................................... len:18 al:5
....AUcAUGGCUGUGCGAGUC.................................................................... len:18 al:1
....AUAAUGGCUGUGCGAGUC.................................................................... len:18 al:74
.....UAAUGGCUGUGCGAGUg.................................................................... len:17 al:1
.....UuAUGGCUGUGCGAGUCA................................................................... len:18 al:1
.....UAAUGGCUGUGCGAGUC.................................................................... len:17 al:2
.....UuAUGGCUGUGCGAGUC.................................................................... len:17 al:38
......uAUGGCUGUGCGAGU..................................................................... len:15 al:2
......uAUGGCUGUGCGAGUC.................................................................... len:16 al:7
.......AUGGCUGUGCGAGUCcAAUGUUUCGGC........................................................ len:27 al:1
.......AUGGCUGUGCGgGUC.................................................................... len:15 al:1
.......AUGGCUGUGCGAGUC.................................................................... len:15 al:1
.......AUGGCUGUGCGAGUCc................................................................... len:16 al:1
..................AGUCAAAUGUUUCGGCUUGUUCC................................................. len:23 al:2
..................AGUgAAAUGUUUCGGCUUGUUC.................................................. len:22 al:3
..................AGUgAAAUGUUUCGGCUUGUUCC................................................. len:23 al:4
....................UgAAAUGUUUCGGCUUGUUCCC................................................ len:22 al:2
....................UCcAAUGUUUCGGCUUGUUCCCGU.............................................. len:24 al:2
....................UgAAAUGUUUCGGCUUGUUCC................................................. len:21 al:6
....................UgAAAUGUUUCGGCUUGUUCCCG............................................... len:23 al:3
....................UCcAAUGUUUCGGCUUGU.................................................... len:18 al:1
....................UCAAAUGUUUCGGCUUGUUCCu................................................ len:22 al:1
....................UCAAAUGUUUCGGCUUGUUCC................................................. len:21 al:1
....................UCcAAUGUUUCGGCUUGUUCCCG............................................... len:23 al:9
....................UCAAAUGUUUCGGCUUGUUCCCa............................................... len:23 al:1
....................UCAAAUGUUUCGGCUUGUUCCCGUU............................................. len:25 al:5
....................UCcAAUGUUUCGGCUUGUUCCC................................................ len:22 al:3
.....................gAAAUGUUUCGGCUUGUUCCCG............................................... len:22 al:8
.....................CcAAUGUUUCGGCUUGUUCCCG............................................... len:22 al:25
.....................gAAAUGUUUCGGCUUGUUCCCGU.............................................. len:23 al:3
.....................CAAAUGUUUCGGCUUGUUCCCG............................................... len:22 al:4
.....................CcAAUGUUUCGGCUUGUUCCCGU.............................................. len:23 al:4
.....................CcAAUGUUUCGGCUUGUUCCCGUU............................................. len:24 al:4
.....................CAAAUGUUUCGGCUUGUUCC................................................. len:20 al:2
.....................CcAAUGUUUCGGCUUGUUCC................................................. len:20 al:9
.....................CAAAUGUUUCGGCUUGUUCCu................................................ len:21 al:1
......................cAAUGUUUCGGCUUGUUCCCGUUUUC.......................................... len:26 al:1
......................AAAUGUcUCGGCUUGUUCCCGUU............................................. len:23 al:3
......................AAAUGUUUCGGCUUGUUCCCGa.............................................. len:22 al:24
......................AgAUGUUUCGGCUUGUUCC................................................. len:19 al:8
......................AAAUGUUUCGGCUUGU.................................................... len:16 al:1
......................AAAUGUUUCGGCUUGUcCCCGU.............................................. len:22 al:1
......................AAAUGUUUCGGCUcGUUCC................................................. len:19 al:3
......................AAcUGUUUCGGCUUGUUCCCG............................................... len:21 al:14
......................AAAUGUUUCGGCUUGUUCgCG............................................... len:21 al:1
......................AAAUGUUUCGGCUUGUUCCCGUUUUCGGgA...................................... len:30 al:1
......................AAAUGUUUuGGCUUGUUCCC................................................ len:20 al:2
......................AAAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:206
......................AAAUGUUUuGGCUUGUUCCCGU.............................................. len:22 al:1
......................AAAcGUUUCGGCUUGUUCC................................................. len:19 al:2
......................AAcUGUUUCGGCUUGUUCCC................................................ len:20 al:5
......................AAAUGUUUCGGCUaGUUCCCG............................................... len:21 al:5
......................AAAUGUUUCGGCUUGcUCC................................................. len:19 al:2
......................AAAUGUUUCuGCUUGUUCCCG............................................... len:21 al:3
......................AAAUGUUUCGGCcUGUUCCCG............................................... len:21 al:58
......................AAAUGUUUCaGCUUGUUCCC................................................ len:20 al:3
......................AAAUGUUUCGGCUUGcUCCCGU.............................................. len:22 al:1
......................AAAUGUUUCGGCUUGUa................................................... len:17 al:1
......................AAAUGUUUCGGCUUGUUaC................................................. len:19 al:1
......................AAAUGUaUCGGCUUGUUCCCG............................................... len:21 al:2
......................AAAUGUUUCGGCUUGUUCCCu............................................... len:21 al:562
......................AAuUGUUUCGGCUUGUUCCCG............................................... len:21 al:6
......................AAAUGUUUCGGCUUGUUCCuGUU............................................. len:23 al:1
......................uAAUGUUUCGGCUUGUU................................................... len:17 al:1
......................AAAUGUgUCGGCUUGUUCCCG............................................... len:21 al:2
......................AAAUGUUcCGGCUUGUUCCCGUU............................................. len:23 al:1
......................AAAUGUUUCGGCUUGUUCCC................................................ len:20 al:1817
......................cAAUGUUUCGGCUUGUUC.................................................. len:18 al:1621
......................AAAaGUUUCGGCUUGUUCCCG............................................... len:21 al:1
......................AAAUGUUUCGGCUUGUUCCCG............................................... len:21 al:16814
......................AAAUGUUUCGGCUUaUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUgGUUCCCGU.............................................. len:22 al:1
......................cAAUGUUUCGGCUUGUUCCC................................................ len:20 al:4566
......................AAgUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:1
......................AcAUGUUUCGGCUUGUUCCC................................................ len:20 al:1
......................AAAUGUUUCGGCUUGUc................................................... len:17 al:1
......................AAAUGUUUCGGCUUGUUCg................................................. len:19 al:27
......................AAAUGUUaCGGCUUGUUCCCGU.............................................. len:22 al:1
......................AAAUGUUUCGGCUUGUUCCCa............................................... len:21 al:4034
......................AAAUGUUUCGGCUUGUUCCCcU.............................................. len:22 al:15
......................AAAUGUUcCGGCUUGUUCCCGU.............................................. len:22 al:1
......................AAAUGUUUCGGgUUGUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGUUu.................................................. len:18 al:80
......................gAAUGUUUCGGCUUGUUCCC................................................ len:20 al:5
......................AAAUGUUUCGGCUUGUUCa................................................. len:19 al:1213
......................cAAUGUUUCGGCUUGUUCCCGUUUUCG......................................... len:27 al:2
......................AAAUGUUUCGGCUUGUUCCCGUUUUu.......................................... len:26 al:2
......................AAAUGUUUCGGCUUGUU................................................... len:17 al:11
......................AAAUGUUUCGGCcUGUUCC................................................. len:19 al:6
......................AAAUGUUUCGGCUUGUUCCu................................................ len:20 al:663
......................AAAUGUUUCGGCUUGUUCCCGUa............................................. len:23 al:20
......................AAAUGUUUCaGCUUGUUCCCG............................................... len:21 al:14
......................AAAUGUUUCGGCaUGUUCCCG............................................... len:21 al:1
......................uAAUGUUUCGGCUUGUUCCC................................................ len:20 al:4
......................AAAUGUUgCGGCUUGUUC.................................................. len:18 al:1
......................cAAUGUUUCGGCUUGUUCCCG............................................... len:21 al:90293
......................AAAcGUUUCGGCUUGUUCCCG............................................... len:21 al:31
......................AAAUGUUUCGGCUUGUUCCaG............................................... len:21 al:32
......................AAAUGUUUCGGCgUGUUCCCG............................................... len:21 al:1
......................AAAUGUUUCGGCUUGUcCC................................................. len:19 al:6
......................gAAUGUUUCGGCUUGUUCC................................................. len:19 al:9
......................AAAUGUUUCGGuUUGUUCCCG............................................... len:21 al:20
......................AAAUGcUUCGGCUUGUUCC................................................. len:19 al:4
......................gAAUGUUUCGGCUUGUUCCCG............................................... len:21 al:112
......................AAAUGUUUCGGCUUGUUCCCGcU............................................. len:23 al:5
......................AAAUGUUUCGGCUUGUUCC................................................. len:19 al:1552
......................AAAUGUUUCGaCUUGUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGUUCuCGU.............................................. len:22 al:2
......................AAAUGUcUCGGCUUGUUCCCG............................................... len:21 al:44
......................AuAUGUUUCGGCUUGUUCCCG............................................... len:21 al:12
......................AAAUGUUUCaGCUUGUUCCCGU.............................................. len:22 al:1
......................AAAUGUUUCGGCUUGUUCCCuUUUU........................................... len:25 al:3
......................AAAUGUUUCGGCUUGUUCCCaUU............................................. len:23 al:2
......................AAAUGUUUCGGCUgGUUCCC................................................ len:20 al:1
......................AAAUGUUUCGGCUaGUUCC................................................. len:19 al:1
......................AAAcGUUUCGGCUUGUUCCCGU.............................................. len:22 al:2
......................uAAUGUUUCGGCUUGUUCC................................................. len:19 al:5
......................AAAUGUUUCGGCUUGUUCCaGUU............................................. len:23 al:1
......................AAAUGUUUCGGCaUGUUCCC................................................ len:20 al:1
......................AAAUGUUUaGGCUUGUUCC................................................. len:19 al:1
......................cAAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:4525
......................AAgUGUUUCGGCUUGUUCC................................................. len:19 al:6
......................AAAUGUUUCGGCcUGUUC.................................................. len:18 al:2
......................AAAUGUUUCGGCUUGUUCCCGaU............................................. len:23 al:3
......................AuAUGUUUCGGCUUGUUCC................................................. len:19 al:1
......................gAAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:1
......................AAAcGUUUCGGCUUGUUCCCGUU............................................. len:23 al:2
......................AAAUGUUUCaGCUUGUUC.................................................. len:18 al:1
......................AAAUGcUUCGGCUUGUUCCC................................................ len:20 al:2
......................AAAUGUUUCGGCUUGUUCCCuU.............................................. len:22 al:15
......................AAAUGUUUCGGCUUGcUCCCG............................................... len:21 al:33
......................AAAUGUUUCGGCUUGUUaCCG............................................... len:21 al:3
......................AAAUGUUUuGGCUUGUUCCCG............................................... len:21 al:15
......................cAAUGUUUCGGCUUGUUCCCGUUU............................................ len:24 al:132
......................AAAUGUUUCGGCUUGUUCCCGUg............................................. len:23 al:3
......................AAAUGUcUCGGCUUGUUCC................................................. len:19 al:1
......................AAAUGaUUCGGCUUGUUCCCG............................................... len:21 al:3
......................AgAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:2
......................AAAUGUUUCGGgUUGUUCCC................................................ len:20 al:1
......................cAAUGUUUCGGCUUGUUCCCGUUUUCGGU....................................... len:29 al:3
......................AAAUGUUUCGGCUUGUcCCCGUUUUCGGU....................................... len:29 al:1
......................AAAUGUUUCGGCUcGUUCCCG............................................... len:21 al:42
......................AAAUGUUUCGGCUUGUcCCCG............................................... len:21 al:47
......................AAAUGUUUCGuCUUGUUCCCG............................................... len:21 al:3
......................AAAUGUUUCGGCUcGUUCCCGU.............................................. len:22 al:3
......................AAAUGUUUCGGCUUGUUuCCG............................................... len:21 al:22
......................AcAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:1
......................AgAUGUUUCGGCUUGUUCCC................................................ len:20 al:8
......................AAAUGUUUCGGCUUGcUCCCGUU............................................. len:23 al:1
......................AAAUGUUUCGGCUUGUgCCCG............................................... len:21 al:2
......................AgAUGUUUCGGCUUGUUC.................................................. len:18 al:3
......................AAAcGUUUCGGCUUGUUCCC................................................ len:20 al:3
......................AAAUGUUUCGGCUUGUUCCCGg.............................................. len:22 al:8
......................AAAUGUUUCGGCUUGUUCCCGUUUU........................................... len:25 al:4
......................AAAUGUUUCGGCUcGUUC.................................................. len:18 al:1
......................AAAUGUUUCGGCUUGUUCCa................................................ len:20 al:469
......................AAAUGUUUCGuCUUGUUCCC................................................ len:20 al:2
......................AAAUGUUUCGGCUUGaU................................................... len:17 al:1
......................AAAUGUUUCGGCUUaUUCCC................................................ len:20 al:2
......................AAAUGUUUCGGCUUGUUCCuG............................................... len:21 al:27
......................gAAUGUUUCGGCUUGUUC.................................................. len:18 al:4
......................AAAUGUUUCGGuUUGUUCCC................................................ len:20 al:2
......................AAAUGUUUCGGCUUGUUuC................................................. len:19 al:2
......................AAAUGUUUCGGCUUGUUCCuGU.............................................. len:22 al:1
......................AAAUGUUUCGGCUUaUUCCCG............................................... len:21 al:16
......................AAAUGUUUCGGCUUGUUCCCGUUUa........................................... len:25 al:1
......................AAAUGUUUCGGCUcGUUCCCGUU............................................. len:23 al:1
......................AAAUGUUUCGGCUUGUaCC................................................. len:19 al:2
......................AAAUGUUUCGGCUUGUUCuC................................................ len:20 al:5
......................AAAUGUUUCGGCcUGUUCCCGU.............................................. len:22 al:3
......................cAAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:1876
......................AAAUGUUUCGGCUUGaUCCC................................................ len:20 al:1
......................AAAUGUUUCGGCUUGgUCCCG............................................... len:21 al:3
......................AAAUGUUUCGaCUUGUUCCC................................................ len:20 al:2
......................AAAUGUcUCGGCUUGUUCCCGU.............................................. len:22 al:1
......................AAgUGUUUCGGCUUGUUC.................................................. len:18 al:2
......................AAAUGUUUCGGCUUGUUCCCGUUUUCGGU....................................... len:29 al:3
......................AAAUGUUcCGGCUUGUUC.................................................. len:18 al:1
......................AAAUGUUUCGGCUUGUUCu................................................. len:19 al:424
......................AgAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:1
......................AcAUGUUUCGGCUUGUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGUUCCCGc.............................................. len:22 al:66
......................AAAUGUUUCGcCUUGUUCCCG............................................... len:21 al:3
......................AAAUGUUUCGGCUUGUUCCCGUUa............................................ len:24 al:2
......................AAgUGUUUCGGCUUGUUCCC................................................ len:20 al:4
......................AAAUGUUUCGGgUUGUUCCCG............................................... len:21 al:4
......................AAAUGUUUCGGCUUGUUCuCG............................................... len:21 al:33
......................AAAUGUUgCGGCUUGUUCCCG............................................... len:21 al:6
......................AAAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:622
......................AAAUGUUUCGGCUUGUUCCaGU.............................................. len:22 al:1
......................AAAUGUUUCuGCUUGUUCCCGU.............................................. len:22 al:2
......................AAAUGUUUCGGCUUGcUCCC................................................ len:20 al:10
......................AAAUGUUUCGGCUUGUUCaCG............................................... len:21 al:15
......................AAAUaUUUCGGCUUGUUCCCG............................................... len:21 al:6
......................AAAUGcUUCGGCUUGUUCCCG............................................... len:21 al:18
......................AAAUGUUaCGGCUUGUUCC................................................. len:19 al:2
......................AAAUGUUUCGGCaUGUUCC................................................. len:19 al:2
......................AAAUGUUUCGGCUUGUUCCCGUcU............................................ len:24 al:1
......................AAAUGUUUCGGCUUGUgCC................................................. len:19 al:3
......................AAAUGUUcCGGCUUGUUCCC................................................ len:20 al:6
......................cAAUGUUUCGGCUUGU.................................................... len:16 al:7
......................AAAUGUUUuGGCUUGUUCC................................................. len:19 al:1
......................AAAUGUUaCGGCUUGUUCCCG............................................... len:21 al:1
......................uAAUGUUUCGGCUUGUUC.................................................. len:18 al:2
......................AcAUGUUUCGGCUUGUUCCCG............................................... len:21 al:11
......................AAAUGUcUCGGCUUGUUCCC................................................ len:20 al:7
......................AAAUGUUUaGGCUUGUUCCCG............................................... len:21 al:4
......................AAAUGUUUCGGCUUGUUCCCuUU............................................. len:23 al:14
......................gAAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:5
......................AAAUGUUUCGGCUUGUUCCg................................................ len:20 al:24
......................AAAUGUUUCGGCUUGUUCCCaU.............................................. len:22 al:34
......................AAAUGUUUCGGCUUGUUCCCuUUU............................................ len:24 al:4
......................uAAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:10
......................AAAUGcUUCGGCUUGUUCCCGU.............................................. len:22 al:1
......................AAAUGUUUCGaCUUGUUCCCG............................................... len:21 al:10
......................AAAUGgUUCGGCUUGUUCCCG............................................... len:21 al:3
......................AAAUGUUUCGGCUUGUcCCC................................................ len:20 al:4
......................AAAUGUUcCGGCUUGUUCC................................................. len:19 al:3
......................cAAUGUUUCGGCUUGUUCCCGUUUU........................................... len:25 al:56
......................AAcUGUUUCGGCUUGUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGUUCCCGUUU............................................ len:24 al:8
......................AAAUGUUUCGGCUUGUUa.................................................. len:18 al:54
......................AAAUGUUUCGGCUUGUUCaC................................................ len:20 al:4
......................AAAUGUUUCaGCUUGUUCCCGUU............................................. len:23 al:1
......................AAgUGUUUCGGCUUGUUCCCG............................................... len:21 al:54
......................AAcUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:2
......................AAAUGUUUCGGaUUGUUCCCG............................................... len:21 al:2
......................uAAUGUUUCGGCUUGUUCCCG............................................... len:21 al:107
......................AAAUGUUUCGGCUUGUaCCCG............................................... len:21 al:3
......................AAAUGUUUCGGCUUGUcCCCGUU............................................. len:23 al:1
......................AAAUGUUUCGGCUUGUUC.................................................. len:18 al:509
......................AAAUGUUUCGGCUUGUUCCgG............................................... len:21 al:6
......................AAAUGUUUCGGCUUGUUuCC................................................ len:20 al:3
......................AAAUGUUUCGGCUUGUUg.................................................. len:18 al:1
......................uAAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:1
......................AAAUGUUUCGGCUUGUUCCCGUc............................................. len:23 al:24
......................AAAUGUUUCGGCUcGUUCCC................................................ len:20 al:4
......................AAAgGUUUCGGCUUGUUCCCG............................................... len:21 al:1
......................cAAUGUUUCGGCUUGUU................................................... len:17 al:69
......................AAcUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:1
......................AAAUGUUUCGGCcUGUUCCC................................................ len:20 al:10
......................AAcUGUUUCGGCUUGUUC.................................................. len:18 al:2
......................AgAUGUUUCGGCUUGUUCCCG............................................... len:21 al:52
......................AAAUGUUcCGGCUUGUUCCCG............................................... len:21 al:34
......................cAAUGUUUCGGCUUGUUCC................................................. len:19 al:4368
......................AAAUGUUUCGGCUUGUUCCCc............................................... len:21 al:257
.......................AAUGUUUCGGCUUGUUCCCGUa............................................. len:22 al:1
.......................AAUGUUUCGGCUUGUUCCCc............................................... len:20 al:21
.......................AAUGUUUCGGCUUGUUCCuGU.............................................. len:21 al:1
.......................AAUGUUUCGGCUUGUUCCCuU.............................................. len:21 al:10
.......................AAUGUUUCGGCUUGUUCCCGa.............................................. len:21 al:1
.......................AAUGUUUCGGCUUGUUCCC................................................ len:19 al:123
.......................gAUGUUUCGGCUUGUUCCC................................................ len:19 al:1
.......................AAUGUUUCGGCUcGUUCCCG............................................... len:20 al:3
.......................AAUGUUUCGGCUUGUUCCCcU.............................................. len:21 al:1
.......................AAUGUUUCGGCUUGUUCCu................................................ len:19 al:13
.......................AAUGUUUCGGCUUGUgCC................................................. len:18 al:1
.......................AAUGgUUCGGCUUGUUCCCG............................................... len:20 al:1
.......................AAUGUUUCGGCUUGUUCCCGUUU............................................ len:23 al:3
.......................AAUGUUUCGGCUUGUcCC................................................. len:18 al:2
.......................AAUGUUUCGGCUUGUUCCCGUc............................................. len:22 al:2
.......................AAUGUUUCGGCUUGUUCCaG............................................... len:20 al:4
.......................AAUGUUUCGGCUUGUUCCCa............................................... len:20 al:328
.......................AAUGUUUCGGCUUGUUCCCuUU............................................. len:22 al:3
.......................AAUGUUUCGGCUUGUUCCCGcU............................................. len:22 al:1
.......................AAUGUUUCGGCUUGUUCuC................................................ len:19 al:1
.......................AAUGUUUCGGCUUGUUCa................................................. len:18 al:143
.......................AAUGUUUCGGCUUGcUCCCG............................................... len:20 al:6
.......................AAUGUUUCaGCUUGUUCCCG............................................... len:20 al:2
.......................uAUGUUUCGGCUUGUUCC................................................. len:18 al:1
.......................cAUGUUUCGGCUUGUUCCCG............................................... len:20 al:3
.......................AAUGUUUCGGCUUGUUCaCG............................................... len:20 al:1
.......................AAaGUUUCGGCUUGUUCCCG............................................... len:20 al:1
.......................AAUGUUUCGGCUUGUUaC................................................. len:18 al:2
.......................AcUGUUUCGGCUUGUUCCCG............................................... len:20 al:2
.......................AAUGUUUCGGCaUGUUCCCG............................................... len:20 al:1
.......................AAUGUUUCGGCUUGUUCCCaU.............................................. len:21 al:5
.......................AgUGUUUCGGCUUGUUCCC................................................ len:19 al:1
.......................AAUGUUUCGGCUUGUUCCCGUUUc........................................... len:24 al:1
.......................AAUGUUUCGGCUUGUUCCuG............................................... len:20 al:3
.......................AAUaUUUCGGCUUGUUCCCG............................................... len:20 al:1
.......................AAUGUUUCGGCUUGUUuCCG............................................... len:20 al:1
.......................AAUGUUUCGGCUUGUUCCCG............................................... len:20 al:1606
.......................AAUGUUUCGGCUUGUUCC................................................. len:18 al:161
.......................AAUGUUUCGGCUUGUUCCCGUU............................................. len:22 al:18
.......................AAUGUUUCGaCUUGUUCCC................................................ len:19 al:1
.......................AAUGUUUCGGCUUGUUCuCG............................................... len:20 al:3
.......................AAUGUUUCGGCUUGUUCCCaUUU............................................ len:23 al:1
.......................AAUGUUUCGGCUUGUUCCCGUUUU........................................... len:24 al:2
.......................AAUGUUUCGGCUUGUUCCa................................................ len:19 al:24
.......................AcUGUUUCGGCUUGUUCCCGU.............................................. len:21 al:1
.......................AAUGUUUCGGCUUuUUCCCGU.............................................. len:21 al:1
.......................AAUGUUUCGGCUUuUUCCCG............................................... len:20 al:1
.......................AAUGUUUuGGCUUGUUCCCG............................................... len:20 al:1
.......................AAUGUUUCGGCUUGUUCCCGc.............................................. len:21 al:15
.......................AAUGUUUCGGCUUGcUCC................................................. len:18 al:1
.......................AAUGcUUCGGCUUGUUCCCG............................................... len:20 al:5
.......................gAUGUUUCGGCUUGUUCCCG............................................... len:20 al:5
.......................AAUGUUUCGGCaUGUUCCCGUU............................................. len:22 al:1
.......................uAUGUUUCGGCUUGUUCCCG............................................... len:20 al:1
.......................AgUGUUUCGGCUUGUUCCCG............................................... len:20 al:13
.......................AAUGUUUCGGCUUGUUCCg................................................ len:19 al:1
.......................AAUGUUUCGGCcUGUUCCCGU.............................................. len:21 al:1
.......................AAUGUUUCGGCUUGUUCu................................................. len:18 al:30
.......................AAUuUUUCGGCUUGUUCCCG............................................... len:20 al:2
.......................AAUGUUUCGGCUUGUUu.................................................. len:17 al:1
.......................AAUGUUUCGGCUUGUUCCCu............................................... len:20 al:54
.......................AAUGUUUuGGCUUGUUCC................................................. len:18 al:1
.......................AAUGUUUCGGCUUGUUuCC................................................ len:19 al:1
.......................AAUGUUUCGGCUUGcUCCC................................................ len:19 al:1
.......................AgUGUUUCGGCUUGUUCCCGUU............................................. len:22 al:2
.......................AAUGUUUCGGCUUGUUuC................................................. len:18 al:2
.......................AAUGUUUCGGCUUGUUCCCGUUa............................................ len:23 al:2
.......................AAUGUUUCGGCUUGUcCCCG............................................... len:20 al:5
.......................AAUGUUgCGGCUUGUUCCCG............................................... len:20 al:2
.......................AAUGUaUCGGCUUGUUCCCG............................................... len:20 al:1
.......................uAUGUUUCGGCUUGUUCCCGU.............................................. len:21 al:1
.......................AAUGUUUCGGCUUGUUCCCGg.............................................. len:21 al:2
.......................AAUGUUUCGGuUUGUUCCCG............................................... len:20 al:2
.......................AAUGUUUCGGCcUGUUCCCG............................................... len:20 al:6
.......................AAUGUUUCGGCUUGUUCCCGUUUUCGGU....................................... len:28 al:2
.......................AAUGUUUCGGCUUGUUCCCGU.............................................. len:21 al:97
.......................AAcGUUUCGGCUUGUUCCCG............................................... len:20 al:2
.......................cAUGUUUCGGCUUGUUCCCGU.............................................. len:21 al:2
.......................AAUGUUUCGGCUUGUUCaC................................................ len:19 al:1
.......................AAUGUcUCGGCUUGUUCCCG............................................... len:20 al:8
........................AUGUcUCGGCUUGUUCCCG............................................... len:19 al:1
........................AUGUUUCGGCUUGUUC.................................................. len:16 al:2
........................AUGUUUCGGCUUGUUCuCG............................................... len:19 al:1
........................AUGUUUCGGCUUGUUCCCaU.............................................. len:20 al:12
........................AUGUUUCGGCUaGUUCCCG............................................... len:19 al:1
........................AUGcUUCGGCUUGUUCCCGU.............................................. len:20 al:1
........................AUGUUUCGGCUUGUUCCCGUc............................................. len:21 al:23
........................AUGUUUCGGCcUGUUCCC................................................ len:18 al:1
........................AUGUcUCGGCUUGUUCCCGUU............................................. len:21 al:1
........................AUGUUUCGGCUUGUUCCCGUUUUCGGgAAC.................................... len:30 al:1
........................AUGUUUCGGCUUGUUCCCGg.............................................. len:20 al:5
........................AUGUUUCGGCUUGUUCCCuUUUU........................................... len:23 al:1
........................AUGUUUCGGCUUGUUCCCGUUUUCGGgAACA................................... len:31 al:17
........................AUGUUUCGGCUUGUUCCCGUUc............................................ len:22 al:3
........................AUGUUUCGGCUUGUUCCCaUU............................................. len:21 al:17
........................gUGUUUCGGCUUGUUCCCGUU............................................. len:21 al:3
........................AUGUUUCGGCUUGcUCCCG............................................... len:19 al:2
........................AUGUUUCGGCUUGUUCCCuUU............................................. len:21 al:14
........................AUGUUUCGGCUUGUUCaC................................................ len:18 al:1
........................AUGUUUCGGCUUGUUCCCGUUa............................................ len:22 al:1
........................AUGUUcCGGCUUGUUCCCG............................................... len:19 al:3
........................AUGUUUCGGCUUGUUCCCGUUUU........................................... len:23 al:4
........................AUGUUUCGaCUUGUUCCCG............................................... len:19 al:1
........................AUGUUUCGGCUUGUUCCuG............................................... len:19 al:1
........................AUGUUUCGGCUUGUUCCa................................................ len:18 al:19
........................AUGUUUCGGCUUGUUCa................................................. len:17 al:2
........................AUGUUUCGGCUUGUUCCCuU.............................................. len:20 al:49
........................AUGUUUCGGCUUGUUCCCGUUUUCGGUAACA................................... len:31 al:3
........................gUGUUUCGGCUUGUUCCCG............................................... len:19 al:6
........................AUGUUUCGGCUUGUUCCCGU.............................................. len:20 al:265
........................AUGUUUCGGCUUGUUCCC................................................ len:18 al:80
........................AUGUUUCaGCUUGUUCCCGU.............................................. len:20 al:2
........................gUGUUUCGGCUUGUUCCCGU.............................................. len:20 al:3
........................AUGUUUCGGCUUGUUCCCGcU............................................. len:21 al:4
........................AUGUUUCGGCUUGUcCCCG............................................... len:19 al:2
........................AUGUUUCGGCUUGUUCCCu............................................... len:19 al:46
........................AUGUUUCGGCUUGUUCCCGc.............................................. len:20 al:26
........................AUGUUUCGGCUUGUUCC................................................. len:17 al:4
........................AcGUUUCGGCUUGUUCCCG............................................... len:19 al:1
........................AUGUUUCGGCUUGUUCCCG............................................... len:19 al:716
........................AUGUUUCGGCUUGUUCCCGUg............................................. len:21 al:1
........................AUGUUUuGGCUUGUUCCCGUUU............................................ len:22 al:2
........................AUGUUUCGGCUUGUUCCCa............................................... len:19 al:154
........................AUGUUUCGGCUUGUUCCaG............................................... len:19 al:3
........................AUGUUUCGGCUUGUUCCCuUUU............................................ len:22 al:10
........................AUGUUUCGGCUUGUUCCCGUUg............................................ len:22 al:2
........................AUuUUUCGGCUUGUUCCCG............................................... len:19 al:1
........................AUGUUUCGGCUUGUcCCC................................................ len:18 al:1
........................AUGUUUCGGCUUGUcCCCGUU............................................. len:21 al:1
........................AUGUUUCGaCUUGUUCCCGU.............................................. len:20 al:2
........................AUGUUUCGGCUUGUUCCu................................................ len:18 al:21
........................AUGUUUCGGCUUGcUCCCGUU............................................. len:21 al:2
........................AUGUUUCGGCcUGUUCCCG............................................... len:19 al:4
........................AUGUUUCGGCUUGcUCCCGU.............................................. len:20 al:2
........................AUGUUUCGGCUUGUUCCCc............................................... len:19 al:13
........................AUGUUUCGGCUUGUUCCCcU.............................................. len:20 al:6
........................AUGUUUCaGCUUGUUCCCGUU............................................. len:21 al:2
........................AUGUUUCGGCUUGUUCCCGUUUUCG......................................... len:25 al:1
........................AUGUUUCGGCUUGUUCCCGUUU............................................ len:22 al:28
........................AUGUUUCGGCUUGUUCCCGa.............................................. len:20 al:7
........................AUGUUUCGGCUUGUUCuC................................................ len:18 al:1
........................AUGUUUCGGCUUGUUCCCGUUUUCGG........................................ len:26 al:1
........................AUGUUUCGGCUUGUUCCCGUUUUu.......................................... len:24 al:1
........................AUGUUUCGGCUUGUUCaCG............................................... len:19 al:1
........................uUGUUUCGGCUUGUUCCCG............................................... len:19 al:2
........................AUGUUUCGGCUUGUUCCCGUU............................................. len:21 al:221
........................AUGUUUCGGCUUGUUCCCGUa............................................. len:21 al:14
........................AUGUUUCGGCUUGUU................................................... len:15 al:1
........................AUGUUUCGGCUUGUcCCCGU.............................................. len:20 al:1
........................AUGUaUCGGCUUGUUCCCG............................................... len:19 al:1
........................AcGUUUCGGCUUGUUCCC................................................ len:18 al:1
........................AUGUUUCGGCUcGUUCCCG............................................... len:19 al:1
.........................UGUUUCGGCUUGUUCCCuUU............................................. len:20 al:3
.........................UGUUUCGGCUUGUUCCCGUUUUCGGgAAC.................................... len:29 al:4
.........................UGUUUCGGCUUGUUCCCGUUUUCGGgAACA................................... len:30 al:276
.........................UGUUUCGGCUUGUUCCCGUUUUCGGUu...................................... len:27 al:1
.........................UGUUUCGGCUUGUUCCCG............................................... len:18 al:82
.........................UGUUUCGGCUUGUUCCCGUUUUCGGUAAC.................................... len:29 al:1
.........................UGUUUCGGCUUGUUCCCa............................................... len:18 al:21
.........................UGUUUCGGCUUGUUCCC................................................ len:17 al:1
.........................UGUUUCGGCUUGUUCCCGUUUUCGGgA...................................... len:27 al:2
.........................UGUUUCGGCcUGUUCCCG............................................... len:18 al:1
.........................UGgUUCGGCUUGUUCCCG............................................... len:18 al:1
.........................UGUUUCGGCUUGUUCCCc............................................... len:18 al:2
.........................UGUUUCGGCUUGUUCC................................................. len:16 al:3
.........................UGUUUCGGCUUGUUCCCGUUUUCGGUAA..................................... len:28 al:1
.........................UGUUUCGGCUUGUUCCCGUUUUCGGUAACu................................... len:30 al:4
.........................UGUUUCGGCUUGUcCCCG............................................... len:18 al:1
.........................UGUUUCGGCUUGUUCCCuUUU............................................ len:21 al:1
.........................UuUUUCGGCUUGUUCCCG............................................... len:18 al:1
.........................UGUcUCGGCUUGUUCCCG............................................... len:18 al:1
.........................UGUUUCGGCUUGUUCCCuU.............................................. len:19 al:5
.........................UGUUUCGGCUUGUUCCCGU.............................................. len:19 al:31
.........................UGUUUCGGCUUGUUCCCGUa............................................. len:20 al:3
.........................UGUcUCGGCUUGUUCCCGUUUUCGGUAAC.................................... len:29 al:1
.........................UGUUUCGGCUUGUUCCCGUUUUCGG........................................ len:25 al:4
.........................UGUUUCGGCUUGUUCCuG............................................... len:18 al:1
.........................UGUUUCGGCUUGUUCCu................................................ len:17 al:1
.........................UGUUUCGGCUUGUUCCCGUUUUCGGUA...................................... len:27 al:1
.........................UGUUUCGGCUUGUUCCuGU.............................................. len:19 al:1
.........................UGUUUCGGCUUGUUCCCGcU............................................. len:20 al:1
.........................UGUUUCGGCUUGUUCCCGUUUUCGGgAA..................................... len:28 al:7
.........................UGUUUCGGCUUGUUCCCGc.............................................. len:19 al:3
.........................UGUUUCGGCUUGUUCCCaUUU............................................ len:21 al:1
.........................UGUUUCGGCUUGUUCCCGUUUUCGGUAACc................................... len:30 al:1
.........................UGUUUCGGCUUGUUuCCGU.............................................. len:19 al:1
.........................UGUUcCGGCUUGUUCCC................................................ len:17 al:1
.........................UGUUUCGGCUUGUUCCCGUUUUCGGUAACA................................... len:30 al:42
.........................UGUUUCGGCUUGUUCCCu............................................... len:18 al:8
.........................UGUUUCGGCUUGUUCCCGUUU............................................ len:21 al:1
.........................UGUUUCGGCUUGUUCCCaUU............................................. len:20 al:6
.........................UGUUUCGGCUUGUUC.................................................. len:15 al:1
.........................UGUUUCGGCUUGUUCCCGUc............................................. len:20 al:5
.........................UaUUUCGGCUUGUUCCCGUU............................................. len:20 al:1
.........................UGUUUCGGCUUGUUCCCaU.............................................. len:19 al:2
.........................UGUUUCGGCUUGUUCCCGUg............................................. len:20 al:1
.........................UGUUUCGGCUUGUUCCCGUU............................................. len:20 al:27
..........................GUUUCGGCUUGUUCCCGc.............................................. len:18 al:1
..........................GUUUCGGCUUGUUCCCaUU............................................. len:19 al:2
..........................GUUUCGGCUUGUUCCCaU.............................................. len:18 al:2
..........................GUUUCGGCUUGUUCCCcU.............................................. len:18 al:2
..........................GUUUCGGCUUGUUCCCuUU............................................. len:19 al:1
..........................GUUUCGGCUUGUUuCCGU.............................................. len:18 al:2
..........................GUUUCGGCUUGUUCCCGUU............................................. len:19 al:4
..........................GUUUCGGCUUGUUCCC................................................ len:16 al:1
..........................GUUUCGGCUUGUUCCCGUUUUCGGgAA..................................... len:27 al:3
..........................GUUUCGGCUUGUUCCCG............................................... len:17 al:3
..........................GUUUCGGCUUGUUCCCGU.............................................. len:18 al:7
..........................GUUUCGGCUUGUUCCCuUUUU........................................... len:21 al:1
..........................GUUUCGGCUUGUUCCa................................................ len:16 al:2
..........................GUUUCGGCUUGUUCC................................................. len:15 al:4
...........................UUUCGGCUUGUUCCCGUUUUCGGgA...................................... len:25 al:4
...........................UUUCGGCUUGUUCCCGUUUUCGGgAAC.................................... len:27 al:3
...........................UUUCGGCUUGUUCCCGUUUUCGGgAACA................................... len:28 al:8
...........................UUUCGGCUUGUUCCCG............................................... len:16 al:1
...........................UUUCGGCUUGUUCCCGUc............................................. len:18 al:1
...........................UUUCGGCUUGUUCCCGUUUUCGGUAACA................................... len:28 al:1
...........................UUUCGGCUUGUUCCCGUUUUCGG........................................ len:23 al:3
...........................UUUCGGCUUGUUCCCGUU............................................. len:18 al:2
...........................UUUCGGCUUGUUCCCGUUUUCGGU....................................... len:24 al:1
...........................UUUCGGCUUGUUCCaGUUU............................................ len:19 al:1
...........................UUUCGGCUUGUUCCCGUUUUCGGgAA..................................... len:26 al:161
...........................UUUCGGCUUGUUCCCGUUUUCG......................................... len:22 al:1
............................UUCGGCUUGUUCCCGUUUUC.......................................... len:20 al:1
............................UUCGGCUUGUUCCCG............................................... len:15 al:1
.........................................CGUUUUCGGgAACAAGCC............................... len:18 al:1
.................................................GUAACAAGCCGAAGCgUU....................... len:18 al:2
.................................................GUAACAAGCCGAAGCAUUg...................... len:19 al:1
.................................................GUAACAAGCCGAAGuAUUUAU.................... len:21 al:1
.................................................GUAACAAGCCGAAGCAUUUAaC................... len:22 al:2
.................................................GUAACAAGCCGAAGCAUa....................... len:18 al:4
.................................................GUAACAAGCCGAAGCAUUUAUu................... len:22 al:21
.................................................GUAACAAGCCGAAGCAUUUu..................... len:20 al:1
.................................................GUAACAAGCCGAAGCAUUUAUa................... len:22 al:14
.................................................GUAACAAGCCGAAGCA......................... len:16 al:1
.................................................GUAACAAGCCGAAGCAUUU...................... len:19 al:14
.................................................GUAACAAGCuGAAGCAUUUAU.................... len:21 al:1
.................................................GUAACAAGCCGAAGCAUc....................... len:18 al:4
.................................................GUAACAgGCCGAAGCAUUUAUC................... len:22 al:2
.................................................GUAACAAGCCGAAGC.......................... len:15 al:2
.................................................GUAACAAGCCGAAGCAUUUAa.................... len:21 al:37
.................................................GUAACAAGCCGAAGCAUUUc..................... len:20 al:2
.................................................GUAACgAGCCGAAGCAUUUAU.................... len:21 al:1
.................................................GUAACAAGCCGAAGCAUUUAUC................... len:22 al:1
.................................................GUAACAAGCCGAAGCAUUa...................... len:19 al:1
.................................................GUAgCAAGCCGAAGCAUU....................... len:18 al:3
.................................................GUAACAAGCCGAAGCAUUUAc.................... len:21 al:7
.................................................GUAACAAGCCGAAGCAUU....................... len:18 al:148
.................................................GUAACAAGCCGAAGCAUUUAUuU.................. len:23 al:1
.................................................uUAACAAGCCGAAGCAUUUAU.................... len:21 al:1
.................................................GUAACAAGCCGAAGCAUUUAU.................... len:21 al:65
.................................................GUAACAAGCCaAAGCAUUU...................... len:19 al:1
.................................................GUAACAAGuCGAAGCAUU....................... len:18 al:2
.................................................GUAACAAGCCGAAGCAUUUA..................... len:20 al:28
..................................................UAACAAGCCGAAGCAUUUAa.................... len:20 al:1
...................................................AACAAGCCGAAGCAUUUAU.................... len:19 al:2
...................................................AACAAGCCGAAGCAUUUAUu................... len:20 al:4
...................................................AACAAGCCGAAGCAUUUAUa................... len:20 al:2