Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ptg000039l:35764-35856 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_17623.ps.pdf
Locus Name: Cluster_17623
AAGGAAUGUAUUUUAUUUCACGCAUCAUGUUUCCCUCUUUAUUUUAAAUCAAGGAGGAAGCAUGAUACGUAAAAUAAAGGAAAAAUAAAGAGG
..........((((((((.(((.(((((((((((.(((((..........)))))))))))))))).))).)))))))).............. (-24.80)
..................CACGCAUCAUGUUUCCCUCU....................................................... len:20 al:1
...................ACGCAUCAUGUUUCCCUCUUUAUU.................................................. len:24 al:2
...................ACGCgUCAUGUUUCCCUCUUUAUU.................................................. len:24 al:1
....................CGCAUCAUGUUUCCCUCUUUAUa.................................................. len:23 al:7
....................CGCAUCAUGUUUCCCUCUUU..................................................... len:20 al:27
....................CGCAUCAUGUUUCCCUCUU...................................................... len:19 al:5
....................CGCAUCAUGUUUCCCUCU....................................................... len:18 al:4
....................CGCAUCAUGUUUCCCUCUUUA.................................................... len:21 al:21
....................CGCAUCAUGUUUCCCUCUUUu.................................................... len:21 al:1
....................CGCAUCAUGUUcCCCUCUU...................................................... len:19 al:1
....................CGCAUCAUGUUUCCC.......................................................... len:15 al:1
....................CGCAUCAUGUUUCCCUCc....................................................... len:18 al:2
....................CGCAUCAUGUUUCCCUCUUUAUU.................................................. len:23 al:7
....................CGCAUCAUGUUUCCCUCUUc..................................................... len:20 al:3
....................CGCAUCAUGUUUCCCUCUUUAU................................................... len:22 al:54
....................CaCAUCAUGUUUCCCUCU....................................................... len:18 al:1
....................CGCAUCAUGUUUCCCUCa....................................................... len:18 al:3
.....................GCAUCAUGUUUCCCUCUUUAUU.................................................. len:22 al:1
......................CAUCAUGUUUCCCUCUUUA.................................................... len:19 al:2
......................................UUAUaUUAAAUCAAGGAGGA................................... len:20 al:1
........................................AUUUUAAAUCAAGGAGGAAGCAUGAUA.......................... len:27 al:3
.........................................UUUUAAAUCAAGGAGGAAGCAUGAUACGUA...................... len:30 al:1
..........................................UUUAAAUCAAGGAGGAAGCAUGAUACGUA...................... len:29 al:4
................................................UCAAGGAGGAAGCAUGAUACGU....................... len:22 al:2
................................................UCAAGGAGGAAGCAUGAUACGUAu..................... len:24 al:1
................................................UCAAGGAGGAAGCAUGAUACGUu...................... len:23 al:1
................................................UCAAGGAGGAAGCAUGAUACGUA...................... len:23 al:6
................................................UCAAGGAGGAAGCAUGAUACGUAc..................... len:24 al:1
................................................UCAAGGAGGAAGCAUGAUA.......................... len:19 al:1
................................................UCAAGGAGGAAGCAUGAUACG........................ len:21 al:2
.................................................CAAGGAGGAAGCAUGgUACGUA...................... len:22 al:1
.................................................CAAGGAGGAAGCAUGAUACGUu...................... len:22 al:13
.................................................CAAGGAGGAAGCAUGAUACGcA...................... len:22 al:3
.................................................CAAGGAGGgAGCAUGAUACGUA...................... len:22 al:1
.................................................CAAGGAGGAAGCAUGAUg.......................... len:18 al:1
.................................................CAAGGAGGAAGCAUGAU........................... len:17 al:1
.................................................CAAGGAGGAAGCAUGAUACGa....................... len:21 al:3
.................................................CAAGGuGGAAGCAUGAUACGUA...................... len:22 al:1
.................................................CAAGGAGGAAGCAUGAUACG........................ len:20 al:6
.................................................CAAGGgGGAAGCAUGAUACGUA...................... len:22 al:1
.................................................CAAGGAGGAAGCAUGAUAC......................... len:19 al:22
.................................................CAgGGAGGAAGCAUGAUACGUA...................... len:22 al:2
.................................................CAAGGAGGAAGCAUGAUA.......................... len:18 al:25
.................................................CAAGGAGGAAGCAUGAUACGUAuA.................... len:24 al:12
.................................................CAAGGAGGAAGCAUGAUACGUAg..................... len:23 al:1
.................................................CAAGGAGGAAGCAUGAUACGUA...................... len:22 al:203
.................................................CAAGGAGGAAGCAUGcUACGUA...................... len:22 al:1
.................................................CAgGGAGGAAGCAUGAUA.......................... len:18 al:1
.................................................CAAGGAGGAAGCAUGAUACGUAu..................... len:23 al:117
.................................................CgAGGAGGAAGCAUGAUACGU....................... len:21 al:2
.................................................CAAGGAGGAAGCAUGgUACGU....................... len:21 al:3
.................................................CAAGGAGGAAGCAUGAUACGUAA..................... len:23 al:2
.................................................CAAGGAGGAAGCAUGAUACGUAc..................... len:23 al:7
.................................................CAAGGAGGAAGCAUGAUACaUA...................... len:22 al:1
.................................................CAAGGAGGAAGCAUGAUACGUAAA.................... len:24 al:3
.................................................CAAGGAGGAAGCAUGAUACGU....................... len:21 al:116
.................................................CAAGGAGGAAGCAUGAUACGc....................... len:21 al:10
.................................................CAAGGAGGAAGuAUGAUACGU....................... len:21 al:1
..................................................AAGGAGGAAGCAUGAUACGUA...................... len:21 al:4
..................................................AAGGAGGAAGCAUGAUACGc....................... len:20 al:1
..................................................AAGGAGGAAGCAUGAUACGUAu..................... len:22 al:3
..................................................AAGGAGGAAGCAUGAUACGUuA..................... len:22 al:1
..................................................AAGGAGGAAGCAUGAUACGU....................... len:20 al:4
..................................................AAGGAGGAAGCAUGAUA.......................... len:17 al:1
...................................................AGGAGGAAGCAUGAUACGUu...................... len:20 al:2
...................................................AGGAGGAAGCAUGAUACGUA...................... len:20 al:14
...................................................AGGAGGAAGCAUGAUAC......................... len:17 al:1
...................................................AGGAGGAAGCAUGAUACGUAc..................... len:21 al:1
...................................................AGGAGGAAGCAUGAUACGU....................... len:19 al:3
...................................................AGGAGGAAGCAUGAUACGUAu..................... len:21 al:8
...................................................AGGAGGAAGCAUGAUACG........................ len:18 al:2
...................................................AGGAGGAgGCAUGAUACGUA...................... len:20 al:1