Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ntLink_6:4140195-4140288 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_1748.ps.pdf
Locus Name: Cluster_1748
UAAAUCUGAAUGGUCAAAUUCGCCUGGAUAUAAAUUUGGUGUGUUAAGCAAUUCCAAUUUUAUAUCCAGACAAGUUUUGCCAUUCAAUUGGGGU
......((((((((.(((((.(.(((((((((((.((((.((........)).)))).))))))))))).).))))).))))))))........ (-33.40)
..AAUCUGAAUGGUCAAAUU.......................................................................... len:18 al:1
....................CuCCUGGAUAUAAAUUUGGUGU.................................................... len:22 al:1
....................uGCCUGGAUAUAAAUUUG........................................................ len:18 al:1
....................CGCCUGGAUAUAAAUUUGGUGUGUU................................................. len:25 al:1
....................CGCCUGGAUAUAAAUUUGG....................................................... len:19 al:3
....................CGCCUGGAUAUAAAUUUGa....................................................... len:19 al:1
....................CGCCUGGAUAUAAuUUUG........................................................ len:18 al:2
....................CGCCUGGAUAUAAAUUUGGUGU.................................................... len:22 al:1
....................CGCCUGGAUAUAAAUUUGGUGUG................................................... len:23 al:7
....................CGCCUGGAUAUAAAUUUGGUGUGUUAAGCA............................................ len:30 al:1
....................gGCCUGGAUAUAAAUUUG........................................................ len:18 al:1
....................CGCCUGGAUAcAAAUUUGGUGUG................................................... len:23 al:1
....................CGCCUGGAUAUAAAUUUGGUGUGUc................................................. len:25 al:1
....................CGCCUGGAUAUAAAUUUG........................................................ len:18 al:11
....................CGCCUGGAUAUAAAUUUGGUGUa................................................... len:23 al:1
....................CGCCUGGAUAUAAAUUUGGUGUGU.................................................. len:24 al:3
....................CGCCUGGAUAUgAAUUUGGUGUGUU................................................. len:25 al:1
....................CGCCUGGAUAcAAAUUUGGUGUGU.................................................. len:24 al:2
.....................GCCUGGAUAUAAAUUUGG....................................................... len:18 al:1
......................CCUGGAUAUAgAUUUGGUGUG................................................... len:21 al:1
......................CCUGGAUAUAAAUUUGGUGU.................................................... len:20 al:1
......................CCUGGAUAUAAAUUUGGUGUG................................................... len:21 al:4
........................UGGAUAUAAgUUUGGU...................................................... len:16 al:1
...........................................UUAAGCAAUUCCAAUUUUAUAUCCAGACAAG.................... len:31 al:14
...........................................UUAAGCAAUUCCAAUUUUAUAUCCAGACA...................... len:29 al:1
................................................CAAUUCCAAUUcUAUAUCCAGACAAG.................... len:26 al:1
................................................CAAUUCCAAUUUUAUAUCCAGACA...................... len:24 al:1
.................................................AAUUCCAAUUUUAUAUCCAGACAAG.................... len:25 al:1
..................................................AUUCCAAUUUUAUAUCCAGACAAGc................... len:25 al:1
..................................................AUUCCAAUUUUAUAUCCAGACAAG.................... len:24 al:2
..................................................AUUCCAAUUUUAUAUCCAGACAAGU................... len:25 al:11
...................................................UUCCAAUUUUAUAUCCAGACAAG.................... len:23 al:79
...................................................UUCCAAUUUUgUAUCCAGACA...................... len:21 al:1
...................................................UUCCAgUUUUAUAUCCAGACAAGU................... len:24 al:1
...................................................UUCCAAUUUUAUAUCCAGACAAuU................... len:24 al:1
...................................................cUCCAAUUUUAUAUCCAGACAAGU................... len:24 al:3
...................................................UUCCAAUUUUAUAUCCAGACA...................... len:21 al:42
...................................................UUCCAAUUUUAUAUCCAGAC....................... len:20 al:6
...................................................UUCCAAUUUUAUAUCCAGACAAGU................... len:24 al:130
...................................................UUCCAAUUUUAUAUCCAGcCAAGU................... len:24 al:1
...................................................UUCCAAUUUUAUAUCCAGACAAGUa.................. len:25 al:2
...................................................UUCCAAUUUUAUAcCCAGA........................ len:19 al:1
...................................................UUCCAAUUUUAUAUCCAGACAAa.................... len:23 al:3
...................................................UUCCAAUUUUAUAcCCAGACA...................... len:21 al:1
...................................................UUCCAAUUUUAUAUCCAGACAAGa................... len:24 al:3
...................................................UUCCAAUUUUAUAUCCgGACAAG.................... len:23 al:1
...................................................UUCCAAUUUUAUAUCCAGACAAGUU.................. len:25 al:4
...................................................UUCCAAUUUUAUAUCCAGgCAAGU................... len:24 al:2
...................................................UUCCAAUUUUAUAUCCAGACAAGc................... len:24 al:12
...................................................UUCCAAUUUUAUAUCCAGACAgGU................... len:24 al:2
...................................................UUCCAAUUUUAUAUCCgGACAAGU................... len:24 al:2
...................................................UUCCAAUUUUgUAUCCAGACAAGU................... len:24 al:3
...................................................UUCCAAUUUUAUAUCCAGACuAG.................... len:23 al:1
...................................................UUCCAAUUUUAUAUCCAGACAAGg................... len:24 al:1
...................................................UUCCAAUUUUcUAUCCAGACAAG.................... len:23 al:1
...................................................UUCCAAUUUUAcAUCCAGACAAGU................... len:24 al:2
...................................................UUCCAAUUUUAUAUCCAGACg...................... len:21 al:4
...................................................UUuCAAUUUUAUAUCCAGACA...................... len:21 al:1
....................................................UCCAAUUUUAUAcCCAGACA...................... len:20 al:1
....................................................UCCAAUUUUAUAUCCAGACA...................... len:20 al:228
....................................................UCCAAcUUUAUAUCCAGACAAGU................... len:23 al:1
....................................................UCCAAUUUUgUAUCCAGACAAGU................... len:23 al:14
....................................................cCCAAUUUUAUAUCCAGACA...................... len:20 al:1
....................................................UCCAAUUUUAUAUCCAGACAAGUgU................. len:25 al:2
....................................................UCCAAUUUUAUAUCCAGACAAGc................... len:23 al:87
....................................................UCCAAUUUUAUAUCuAGACAAGU................... len:23 al:2
....................................................UCCAAUUUUAcAUCCAGACAAGU................... len:23 al:3
....................................................UCCAAUUUUAUAUCCAGgCAAG.................... len:22 al:2
....................................................UCCAAUUUUAUAUCCAGACAAGa................... len:23 al:41
....................................................UCCAAUUUUAUAUCCAGACAAGUUUU................ len:26 al:1
....................................................UCCAAUUUUAUAUCCAGACAAGUUU................. len:25 al:2
....................................................UCCAAUUUUAUAUCCAGACg...................... len:20 al:6
....................................................UCCAAUUUUgUAUCCAGACAAG.................... len:22 al:5
....................................................UCCAAUUUcAUAUCCAGACAAGU................... len:23 al:1
....................................................UCCAAUUUUAUAUCCAGACgAGU................... len:23 al:4
....................................................UCCAAUUUUAUAUCCgGACAAG.................... len:22 al:4
....................................................UCCAAUUUUAcAUCCAGACAAG.................... len:22 al:2
....................................................UCCAAUUUUAUAUCCAGACAAGUc.................. len:24 al:3
....................................................UCCAAUUUUAUAUCCAGAuA...................... len:20 al:1
....................................................cCCAAUUUUAUAUCCAGACAAGU................... len:23 al:1
....................................................UCCAAUUUUAUcUCCAGACAAG.................... len:22 al:1
....................................................UCCAAUUUUAUAUCCgGACAAGUU.................. len:24 al:1
....................................................UCCAAUUUUAUAUCCAGACAAGUUaU................ len:26 al:1
....................................................UCCAAUUUUAUAUCCAGACAAGUa.................. len:24 al:10
....................................................UCCAAUUUUAUAcCCAGACAAGU................... len:23 al:1
....................................................UCCAAUUUUAUAUCCgGACAAGU................... len:23 al:3
....................................................UCCAAUUUUAUAUCCAGACAAGUUc................. len:25 al:1
....................................................UCCAAUUUUAUAUCCAGACAAG.................... len:22 al:457
....................................................UCCAAUUUUAUAUCCcGACA...................... len:20 al:1
....................................................UCCAAUUUUAUAUCCAGACAA..................... len:21 al:12
....................................................UCCAAUUUUAUAUCCAGACAAGg................... len:23 al:5
....................................................UCCAAUUUUAUAUCCAGACAAGUUUa................ len:26 al:1
....................................................UCCAAUUUUAUAUCCAGAa....................... len:19 al:1
....................................................UCCAAUUUUAUAUCCAGACAAuU................... len:23 al:1
....................................................UCCAAUUUcAUAUCCAGACAAG.................... len:22 al:1
....................................................UCCAAUUUUAUAUCCAGACAAc.................... len:22 al:1
....................................................UCCAAUUUUAUAUCCAGAuAAGUU.................. len:24 al:2
....................................................UCCAAUUUUAUAUCCAGAC....................... len:19 al:10
....................................................UCCAAUUUUAUAUCCAGACAAGUaU................. len:25 al:1
....................................................UCCAAUUUUAUAUCCAGACAgGU................... len:23 al:5
....................................................UCCAAUUUUAUAUCCAGACAcGU................... len:23 al:1
....................................................UCCAAUUUUAUAUCCAGACAAa.................... len:22 al:13
....................................................UCCAAUUUUAUAUCCAGACAgG.................... len:22 al:2
....................................................UCCAAUUUUAUgUCCAGACAAGU................... len:23 al:1
....................................................UCCAAUUaUAUAUCCAGACAAGU................... len:23 al:1
....................................................UCCAAUUUUAUAUCCAGACAAGUUa................. len:25 al:1
....................................................UCCAAUUUUAUAUCCAGgCAAGU................... len:23 al:2
....................................................UCCAAUUUUAUAUCCAGACAAGcU.................. len:24 al:1
....................................................UCCAAUUUUcUAUCCAGACAAG.................... len:22 al:1
....................................................UCCAAUUUUAUAUCCuGACAAGU................... len:23 al:1
....................................................UCCcAUUUUAUAUCCAGACAAGU................... len:23 al:2
....................................................UuCAAUUUUAUAUCCAGACAAGU................... len:23 al:1
....................................................UCCAAUUUUAUAUCCAGACAAGUU.................. len:24 al:27
....................................................UCCAAUUUUAUAUCCAGACAAGU................... len:23 al:1069
....................................................UCCAAUUUUAUAUCCAGAu....................... len:19 al:1
....................................................UCCAAcUUUAUAUCCAGACA...................... len:20 al:1
....................................................UCCAAUUUUAUAUCCAGA........................ len:18 al:7
....................................................UCCAAUUUUAUAUCC........................... len:15 al:4
....................................................UCCAAcUUUAUAUCCAGACAAG.................... len:22 al:1
....................................................UCCAAUUUUAUAUCCAGACAuG.................... len:22 al:1
....................................................UCCAgUUUUAUAUCCAGACAAG.................... len:22 al:1
....................................................UCCAAUUcUAUAUCCAGACAAGU................... len:23 al:3
....................................................UCCAAUUUUAUAcCCAGACAAG.................... len:22 al:2
....................................................UCCAAUUUUgUAUCCAGACA...................... len:20 al:2
....................................................UCCAAUUUUAUAUCCAGAuAAG.................... len:22 al:1
....................................................UCCAAUUUUAUAUCCAGAuAAGU................... len:23 al:1
.....................................................CCAAUUUUAUAUCCAGACAAGU................... len:22 al:1
.....................................................CCAAUUUUAUAUCCAGACAAG.................... len:21 al:1
......................................................CAAUUUUAUAUCCAGACA...................... len:18 al:2
......................................................CAAUUUUgUAUCCAGACAAGU................... len:21 al:3
........................................................AUUUUAUAUCCAGACAAGU................... len:19 al:1