Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ptg000035l:4808338-4808432 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_17186.ps.pdf
Locus Name: Cluster_17186
AGUUUUGAAUGAAAUUGUAGUGGCUCUUUUAAGUAGUUGAAUAAUUAAAUUUACUCACUGCUUAAAAGAGUCACUACAGCUUUGUCUUACUUUAC
........(((((.(((((((((((((((((((((((.((.(((......))).))))))))))))))))))))))))).))))).......... (-36.40)
AGUUUUGAAUGAAAUUGUAGU.......................................................................... len:21 al:3
AGUUUUGAAUGAAAUUGUAGg.......................................................................... len:21 al:1
AGUUUUGAAUGAAAUUGUAGa.......................................................................... len:21 al:2
.GUUUUGAAUGAAgUUGUAGU.......................................................................... len:20 al:3
.cUUUUGAAUGAAAUUGUAGU.......................................................................... len:20 al:17
.GUUUUGAAUGAgAUUGUAGU.......................................................................... len:20 al:1
.GUUUUGAgUGAAAUUGUAGU.......................................................................... len:20 al:1
.GUUUUGAAUGAAAUUGUAGa.......................................................................... len:20 al:6
.GUUUUGAAUGAAAUUGUAGU.......................................................................... len:20 al:134
.GUUUUGAuUGAAAUUGUAGU.......................................................................... len:20 al:1
.GUUUUGAAcGAAAUUGUAGU.......................................................................... len:20 al:2
..UUUUGAAUGuAAUUGUAGU.......................................................................... len:19 al:1
..UUUUGAAUGAAAUUGUgG........................................................................... len:18 al:1
..UUUUGAAUGAAAUUGUAuU.......................................................................... len:19 al:1
..UUcUGAAUGAAAUUGUAG........................................................................... len:18 al:1
..UUUUGAAUGAAAUUGU............................................................................. len:16 al:3
..UUUUGAAUGAAAUUGUAGa.......................................................................... len:19 al:13
..UUUUGAAUGAAAUUGUAGg.......................................................................... len:19 al:2
..UUUUGAgUGAAAUUGUAGU.......................................................................... len:19 al:2
..UUUUGAAUGAAAUUGUAGU.......................................................................... len:19 al:764
..UUUUGAAUGAAAUcGUAGU.......................................................................... len:19 al:1
..UUUUGgAUGAAAUUGUAGU.......................................................................... len:19 al:2
..aUUUGAAUGAAAUUGUAGU.......................................................................... len:19 al:1
..UUUUGAAUGAAgUUGUAGU.......................................................................... len:19 al:7
..UUUUGAAUGgAAUUGUAGU.......................................................................... len:19 al:2
..UUcUGAAUGAAAUUGUAGU.......................................................................... len:19 al:3
..UUUUGAAUGAuAUUGUAGU.......................................................................... len:19 al:1
..UUUcGAAUGAAAUUGUAGU.......................................................................... len:19 al:1
..UUUUGAAUGAAAUUGUgGU.......................................................................... len:19 al:2
..UUUUGAAUGAcAUUGUAGU.......................................................................... len:19 al:1
..cUUUGAAUGAAAUUGUAGU.......................................................................... len:19 al:3
..UUUUGAAUGAAAUUGUAG........................................................................... len:18 al:5
..UUUUGAAUGAAAUUGUAcU.......................................................................... len:19 al:1
..UUUUGAAUGAgAUUGUAGU.......................................................................... len:19 al:2
..UUUUGAAUGAAAUUGcAGU.......................................................................... len:19 al:2
..UUUUGAAUGAAAUUGUAGaG......................................................................... len:20 al:1
...UUUGAAUGAAAUUGUAGU.......................................................................... len:18 al:159
...UUUGAgUGAAAUUGUAGU.......................................................................... len:18 al:1
...UUUGAAUGAAAUUGU............................................................................. len:15 al:3
...UcUGAAUGAAAUUGUAGU.......................................................................... len:18 al:1
...UUUGAAUGAAAUUGUAGa.......................................................................... len:18 al:7
...cUUGAAUGAAAUUGUAGU.......................................................................... len:18 al:2
...UUUGAAUGAAAUUGcAGU.......................................................................... len:18 al:3
......GAAUGAAAUUGUAGUGGCUCUUU.................................................................. len:23 al:2
.......AAUGAAAUUGUAGUGGCUCUUUU................................................................. len:23 al:4
.......AAUGAAAUUGUAGUGGCUCUUUUA................................................................ len:24 al:1
.......AAUGAAAUUGUgGUGGCUCUUUUAAGUAGU.......................................................... len:30 al:1
........AUGAAAUUGUAGUGGCUCUUUUAAGUAGc.......................................................... len:29 al:1
.........UGAAAUUGUAGUGGCUCUUUUAAGUAGUU......................................................... len:29 al:1
............AAUUGUAGUGGCUCUUUU................................................................. len:18 al:2
............AAUUGUAGUGGCUCUUUUAAGUAGUUGAA...................................................... len:29 al:2
.............AUUGUAGUGGCUCUUUUAAGUAGUUGAAUA.................................................... len:30 al:1
.............AUUGUAGUGGCUCUUUUAAGUAGUU......................................................... len:25 al:1
...................GUGGCUCUUUUAAGUAGUUGAAU..................................................... len:23 al:1
...................GUGGCUCUUUUAAGUAGUUGAAUAA................................................... len:25 al:1
...................GUGGCUCUUUUAAGUAGUUGAAUAAUU................................................. len:27 al:1
....................UaGCUCUUUUAAGUAGUUGAAU..................................................... len:22 al:1
....................UGGCUCUUUUAAGUAGUUGAAUAg................................................... len:24 al:1
....................UGGCcCUUUUAAGUAGUUGAAUAA................................................... len:24 al:1
....................UGGCUCUUUUcAGUAGUUGAAUAA................................................... len:24 al:1
....................UGGCUCUUUUAAGUAGUUGgAUA.................................................... len:23 al:1
....................UGGCUCUUUUAAGUAGUUGAAUAuUU................................................. len:26 al:1
....................UGGuUCUUUUAAGUAGUUGAAUA.................................................... len:23 al:1
....................UGGCUCUUUUAAGUAGUUGAAa..................................................... len:22 al:1
....................UGGCUCUUUUAAGUAGcUGAAUA.................................................... len:23 al:1
....................UGGCUCUUUUAAGUAGUUGgAU..................................................... len:22 al:1
....................UGGCUCUUUUAAGUAGUUGA....................................................... len:20 al:2
....................UGGCUCUUUUAAGUAGUUGAuU..................................................... len:22 al:1
....................aGGCUCUUUUAAGUAGUUGAAU..................................................... len:22 al:1
....................UGGCUCUUUUAAGUAGUUGAAUAAa.................................................. len:25 al:2
....................UGGCUCUUUUAAGUAGUUGAAUAA................................................... len:24 al:111
....................UGGCUCUUUUAAGUAGUUGAAUA.................................................... len:23 al:157
....................UGGCUCUUUUAAGUAGUUGAAUuA................................................... len:24 al:1
....................UGGCUCcUUUAAGUAGUUGAAUAA................................................... len:24 al:1
....................UGGCUCUUUUAAGUAGUUGAAUAAUa................................................. len:26 al:2
....................UGGCUCUUUUAAGUAGUUGAAUu.................................................... len:23 al:4
....................UGGCUCUUUUAAGUAG........................................................... len:16 al:1
....................UGGCUCUUUUAAGUAGUUGAAUAAUU................................................. len:26 al:5
....................UGGCUCUUUUAAGUAGUUGAAUAu................................................... len:24 al:3
....................UGGCUCUUUUAAGUAGUUGAgUAAUU................................................. len:26 al:1
....................UGGCUCUUUUAAGUAGUUGAAUAAc.................................................. len:25 al:2
....................UGGCUCUUUUAAGUAGUUGAAcA.................................................... len:23 al:1
....................UGGCUCUUUUAAGUgGUUGAAUA.................................................... len:23 al:3
....................UGGCUCUUUUAAGUAGUUGAAUAAU.................................................. len:25 al:14
....................UGGCUCUUUUAgGUAGUUGAAUA.................................................... len:23 al:1
....................UGGCUCUUUUAAGUA............................................................ len:15 al:1
....................UGGCUCUUUUAAGUAGUUGAAU..................................................... len:22 al:77
....................UGGCUCUUUUAAGUAGUUGAAgAA................................................... len:24 al:1
....................UGGCUCUUUUAAGUAGUUGAgUA.................................................... len:23 al:2
....................UGGCUCUUUUAAGUAGUUGAAUAuU.................................................. len:25 al:2
....................UGGCUCUUUUAAGUAGUUGAAUg.................................................... len:23 al:1
....................UGGCUCUUUUAAGUAGUUGAAUgA................................................... len:24 al:1
....................UGGCUCUUUUAAGUAGUUGAgU..................................................... len:22 al:1
....................UGGCUCUUUUAAGUAGUUGAA...................................................... len:21 al:10
.....................GGCUCUUUUAAGUAGUUGAAUAA................................................... len:23 al:17
.....................GGCUCUUUUAAGUAGUUGAA...................................................... len:20 al:1
.....................GGCUCUUUUAAGUAGUUGAAc..................................................... len:21 al:2
.....................GGCUCUUUUAAGUAGUUGAgUAA................................................... len:23 al:1
.....................GGCUCUUUUAAGUAGUUGAAUu.................................................... len:22 al:1
.....................GGCUCUUUUAAGUAGUUGAAUAAUUu................................................ len:26 al:3
.....................GGCUCUUUUAAGUAGUUGAAUA.................................................... len:22 al:9
.....................GGCUCUUUUAAGUAGUUGAAUAAUU................................................. len:25 al:2
.....................GGCUCUUUUAAGUAGUUGAAU..................................................... len:21 al:12
.....................GGCUCUUUUAAGUAGUUGAAUg.................................................... len:22 al:1
.....................GGCUCUUUUAAGUAGUUGgAUA.................................................... len:22 al:1
......................GCUCUUUUAAGcAGUUGAAU..................................................... len:20 al:1
.......................CUCUUUUAAGUAGUUGAAUAAUa................................................. len:23 al:1
.......................CUCUUUUAAGUAGUUGAAUAA................................................... len:21 al:1
.......................CUCUUUUAAGUAGUUGgAUAA................................................... len:21 al:2
.......................CUCUUUUAAGUAGUUGAAUA.................................................... len:20 al:1
.......................CUCUUUUAAGUAGUUGgAU..................................................... len:19 al:1
.......................CUCUUUUAAGUAGUUGgAUAAU.................................................. len:22 al:2
........................UCUUUUAAGUAGUUGgAU..................................................... len:18 al:5
........................UCUUUUAAGUAGUUGAAUAAU.................................................. len:21 al:1
........................UCUUUUAAGUAGUUGgAUAAU.................................................. len:21 al:1
........................UCUUUUAAGUAGUUGgAUA.................................................... len:19 al:5
........................UCUUUUAAGUAGUUGAAUA.................................................... len:19 al:3
........................UCUUUUAAGUAGUUGgAUAA................................................... len:20 al:12
........................UCUUUUAAGUAGUUGgA...................................................... len:17 al:2
........................UCUUUUAAGUAGUUGAAUAA................................................... len:20 al:1
........................UCUUUUAAGUAGUUGAAU..................................................... len:18 al:1
.........................CUUUUAAGUAGUUGgAUA.................................................... len:18 al:1
.........................CUUUUAAGUAGUUGAAUAA................................................... len:19 al:3
..........................UUUUAAGUAGUUGgAUAAU.................................................. len:19 al:1
..........................UUUUAAGUAGUUGgAUAA................................................... len:18 al:1
..........................UUUUAAGUAGUUGAAUAAUU................................................. len:20 al:1
...........................UUUAAGUAGUUGAAUAA................................................... len:17 al:1
...........................UUUAAGUAGUUGgAUAAU.................................................. len:18 al:1
............................UUAAGUAGUUGgAUAAUU................................................. len:18 al:2
...............................AGUAGUUGAAUAAUU................................................. len:15 al:1
..........................................AAUUAAAUUUACUCACUGCUUAAAAGA.......................... len:27 al:1
...........................................AUUAAAUUUACUCACUGCUUAAAAGAGUCAC..................... len:31 al:2
...........................................AUUAAAUUUACUCACUGCUUAA.............................. len:22 al:1
............................................UUAAAUUUACUCACUGCUUAAAAGAGUCACc.................... len:31 al:1
............................................UUAAAUUUACUCACUGCUUAAAAGAGUCACU.................... len:31 al:13
............................................UUAAAUUUACUCACUGCUUAAAAGAGUCAuU.................... len:31 al:1
............................................UUAAAUUUACUCACUGCUUAAAAGAGUCACa.................... len:31 al:1
............................................UUAAAUUUACUCACUGCUUAAAAGAGUCcCU.................... len:31 al:1
..................................................UUcCUCACUGCUUAAAAGAGUCACU.................... len:25 al:1
..................................................UUACUCACUGCUUAAAAGA.......................... len:19 al:2
..................................................UUACUCACUGCUUAAAAGAGUCACc.................... len:25 al:1
..................................................UUACUCACUGCUUAAAgGAGUCACU.................... len:25 al:2
..................................................UUACUCACUGCUUAAAAGAGUCACU.................... len:25 al:9
...................................................UACUCACUGCUUAAAAGA.......................... len:18 al:5
...................................................UACUCACUGCUUAAAAGAGUCACU.................... len:24 al:1
...................................................UACUCACUcCUUAAAAGA.......................... len:18 al:1
....................................................ACUCACUGCUUAAAAGAGUCACcA................... len:24 al:7
....................................................ACUCACUGCUUAAAAGAGUC....................... len:20 al:24
....................................................ACUCACUGCUUAAAAGAGUCACc.................... len:23 al:225
....................................................ACUCACUGCUUAAAuGAGUCACU.................... len:23 al:2
....................................................ACUCACUGCUUAAAAGAGU........................ len:19 al:3
....................................................ACUCgCUGCUUAAAAGAGUCAC..................... len:22 al:1
....................................................ACUCACUGCUUAgAAGAGUCACU.................... len:23 al:1
....................................................ACUCACUGCUUAAAAGAG......................... len:18 al:2
....................................................ACUCACUGCUUAAAAGAGUu....................... len:20 al:2
....................................................ACUCACUGCUUAAAAGAGUCAC..................... len:22 al:105
....................................................ACUCACUGCUUAAcAGAGUCACU.................... len:23 al:1
....................................................ACUCACUGCUUAAAAa........................... len:16 al:2
....................................................ACUCACUGCUUAAAAGAGUCACUAuA................. len:26 al:1
....................................................ACUCACUGCUUAAAAGAGUCACU.................... len:23 al:1835
....................................................ACUCACUGCUUAAAA............................ len:15 al:2
....................................................ACUCACUGCUUAAAAGAuUCACU.................... len:23 al:2
....................................................ACUCACUGCUUAAAAGAGUCACUAa.................. len:25 al:2
....................................................ACUCACUGCUUAAAAuAGUCAC..................... len:22 al:1
....................................................ACUCACUGCUUAAAAGAGUCAuU.................... len:23 al:22
....................................................ACUCACUGCUUAAAAGAGUCACa.................... len:23 al:142
....................................................ACUCACaGCUUAAAAGAGUCACU.................... len:23 al:1
....................................................ACUCACUGCUUAAAAGAGUCAa..................... len:22 al:3
....................................................ACUCACUGuUUAAAAGAGUCACU.................... len:23 al:2
....................................................ACcCACUGCUUAAAAGAGUCACU.................... len:23 al:14
....................................................ACUCACUGCUUAAAAGAGUCACUc................... len:24 al:9
....................................................ACUCACcGCUUAAAAGAGUCACU.................... len:23 al:4
....................................................ACUCACUGCUUAAAAGAGUCACUu................... len:24 al:88
....................................................ACUCACUaCUUAAAAGAGUCACU.................... len:23 al:1
....................................................ACUCACUGCUUAAAAGAGUCgCU.................... len:23 al:8
....................................................gCUCACUGCUUAAAAGAGUCACU.................... len:23 al:5
....................................................ACUCACUGCUUAAAAGAGUaACU.................... len:23 al:2
....................................................ACUCACUGCUUAAAAGAGUCACaA................... len:24 al:1
....................................................gCUCACUGCUUAAAAGAGUCAC..................... len:22 al:1
....................................................ACUCACUGCUcAAAAGAGUCACU.................... len:23 al:2
....................................................ACcCACUGCUUAAAAGAGUC....................... len:20 al:2
....................................................ACUCACUGCUUAAAAGAGUCA...................... len:21 al:8
....................................................ACUCACUGCUUAAAAGAGUCAu..................... len:22 al:16
....................................................ACUCACUGCUUAAAAGAGUCACUAu.................. len:25 al:3
....................................................ACUCACUGCUUAcAAGA.......................... len:17 al:1
....................................................ACUCAuUGCUUAAAAGAGUCACU.................... len:23 al:1
....................................................ACUCACUGCUUAAAAGAGUCACg.................... len:23 al:17
....................................................ACUCgCUGCUUAAAAGAGUCACU.................... len:23 al:1
....................................................gCUCACUGCUUAAAAGAGUCA...................... len:21 al:1
....................................................ACUCACUGCUUAAAAGAGUCACUA................... len:24 al:8
....................................................ACUCACUGCUUAAAAGAGcCACU.................... len:23 al:7
....................................................ACUCcCUGCUUAAAAGAGUCACU.................... len:23 al:4
....................................................ACUCACUGCUcAAAAGA.......................... len:17 al:1
....................................................ACUCACUGCUUAAAAG........................... len:16 al:9
....................................................ACUCACUGCUUAAgAGAGUCACU.................... len:23 al:3
....................................................ACUCACUGCUUAAAAGAGUCAaU.................... len:23 al:3
....................................................ACUCACUGCUUAAAAGAGaCACU.................... len:23 al:2
....................................................ACUCACUGCUUAAAAGgGUCACU.................... len:23 al:5
....................................................gCUCACUGCUUAAAAG........................... len:16 al:1
....................................................ACUCACUGCUUAAAAGAGUCACUuC.................. len:25 al:2
....................................................ACUCACUGCUUAAAgGAGUCACU.................... len:23 al:11
....................................................ACUCACUGCcUAAAAGAGUCACU.................... len:23 al:9
....................................................ACUCACUGCUUAAAAGAa......................... len:18 al:4
....................................................ACUCACUGCUUAAAAGA.......................... len:17 al:18
....................................................ACUCACUGCUUAAAAGAGUCc...................... len:21 al:1
....................................................ACUCACUGCUUAAAAGAGUCcCU.................... len:23 al:3
....................................................ACUCACUGCUUAAAAGAGUuACU.................... len:23 al:1
.....................................................CcCACUGCUUAAAAGAGUCACU.................... len:22 al:2
.....................................................CUCACUGCUUAAAAGAGUCACg.................... len:22 al:18
.....................................................CUCACUGCUUAAAAGAGUCcCU.................... len:22 al:3
.....................................................CUCACUGCUUAAAAGAGUCAC..................... len:21 al:358
.....................................................CUCACUGCUUAAAgGAGUC....................... len:19 al:2
.....................................................CUCACUGCUUAAAAGAGUCACUuC.................. len:24 al:1
.....................................................CUCACUGCUUAAAAGAuUCACU.................... len:22 al:1
.....................................................CUCACUaCUUAAAAGAGUCACU.................... len:22 al:1
.....................................................CUCACUaCUUAAAAGAGUCAC..................... len:21 al:3
.....................................................CUCACUGCUUAAAAGAGUC....................... len:19 al:55
.....................................................CUCACUGCcUAAAAGAGUCAC..................... len:21 al:2
.....................................................CUCACUGCUUAAAAGAGUCACUu................... len:23 al:32
.....................................................CUCACUGCUUAAAAGAGUCAu..................... len:21 al:37
.....................................................CUCACUGCUUAAgAGAGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGcCACU.................... len:22 al:6
.....................................................CUCACUGCUUAAAAGAGUCgCU.................... len:22 al:5
.....................................................CUCACUGCcUAAAAGAGUCACU.................... len:22 al:2
.....................................................CUCACUGCUUAcAAGAGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAuAAGAGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGUCg...................... len:20 al:1
.....................................................CUCACUGCUUAgAAGAGUCACU.................... len:22 al:3
.....................................................CUCACUGCUUAAAAGAGUCgC..................... len:21 al:2
.....................................................CUCACUGCUUAAAAGAGUCACa.................... len:22 al:143
.....................................................CUCACUGCUUAAAAGAGaCACU.................... len:22 al:1
.....................................................CUCgCUGCUUAAAAGAGUCACU.................... len:22 al:7
.....................................................CUCACUGCaUAAAAGAGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGgGUCACU.................... len:22 al:5
.....................................................CUCACUGCUUgAAAGAGUCACU.................... len:22 al:2
.....................................................CUCACUGCUUAAcAGAGUC....................... len:19 al:1
.....................................................CUCACUGCUUAAAAGAGUCAgU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGUCACcA................... len:23 al:5
.....................................................CcCACUGCUUAAAAGAGUCAC..................... len:21 al:3
.....................................................CUCACUGCUcAAAAGAGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAuGAGUCAC..................... len:21 al:1
.....................................................CUCACUGCUUAAAAGAGcCAC..................... len:21 al:1
.....................................................CUCACUGCUUAgAAGAGUCAC..................... len:21 al:1
.....................................................CUCACUGCUUAAAAGAaUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGUCACU.................... len:22 al:1222
.....................................................CUCACUGCUUAAAcGAGUCAC..................... len:21 al:1
.....................................................CUCACUGCUUAAAAGAGUCACc.................... len:22 al:153
.....................................................CUCACUGCUUAAAgGAGUCACU.................... len:22 al:5
.....................................................CUCACUGCUUAAAAGAGUu....................... len:19 al:5
.....................................................CUCACUGuUUAAAAGAGUCACU.................... len:22 al:2
.....................................................CUCACUGCUUAAgAGAGUCAC..................... len:21 al:1
.....................................................CUCACUGCUUcAAAGAGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGUCAuU.................... len:22 al:15
.....................................................CUCACUGCUUAAAAGAGUCA...................... len:20 al:39
.....................................................CUCACUGCUUAAAAGAGUCACUg................... len:23 al:1
.....................................................CUCACcGCUUAAAAGAGUCACU.................... len:22 al:3
.....................................................CUCACUGCUUgAAAGAGUC....................... len:19 al:1
.....................................................CUCACUGCUUAAAAGAGUCACUA................... len:23 al:5
.....................................................CUCACUGCUUAAAAGAGUCu...................... len:20 al:2
.....................................................CUCACUGCUUAAAAGcGUCACU.................... len:22 al:1
.....................................................CUCACaGCUUAAAAGAGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGUCAa..................... len:21 al:8
.....................................................CUCACUGCUUAAAAGAGU........................ len:18 al:32
.....................................................CUCACUGCUUAAAAGAGUuACU.................... len:22 al:1
.....................................................CUCgCUGCUUAAAAGAGUCAC..................... len:21 al:1
......................................................UCACUGCUUAAAgGAGUCACU.................... len:21 al:3
......................................................UCACUGCUUAAAAGAGUC....................... len:18 al:3
......................................................UCACUGCUUAAAAGAGUCACc.................... len:21 al:16
......................................................UCACUGCUUAAAAGAGUCACU.................... len:21 al:121
......................................................UCACUGCUUAAAAGAGUCAu..................... len:20 al:2
......................................................UCACcGCUUAAAAGAGUCACU.................... len:21 al:1
......................................................UCACUGCUUAAAAGAGUCA...................... len:19 al:5
......................................................UuACUGCUUAAAAGAGUCAC..................... len:20 al:2
......................................................UCACUGCUUAAAAGAGUCg...................... len:19 al:1
......................................................UCACUGCUUAAAAGAGUCAaUA................... len:22 al:1
......................................................UCACUGCUUAgAAGAGUCACU.................... len:21 al:1
......................................................UCACUGCUUAAAAGgGUCACU.................... len:21 al:1
......................................................UCACUGuUUAAAAGAGUCACU.................... len:21 al:1
......................................................UCACUGCUUAAAAGAGUCACa.................... len:21 al:14
......................................................UCACUGCUUAAAAGAGUCAC..................... len:20 al:22
......................................................UCACUGCUUAAAAGAGUCACg.................... len:21 al:1
......................................................UCACUGCUUAAAAGAGUCgCU.................... len:21 al:1
......................................................UCACUGCUUAAAAGAGUCACcA................... len:22 al:1
.......................................................CACUGCUUAAAAGAGUCAC..................... len:19 al:5
.......................................................CACUGCUUAAAAGAGUCACUc................... len:21 al:2
.......................................................CACUGCUUAAAAGAGUCACa.................... len:20 al:7
.......................................................CACUGCUUAAAAGAGUCACc.................... len:20 al:16
.......................................................CACUGCUUAAAAGAGUCACUACA................. len:23 al:2
.......................................................CACUGCUUAAAAGAGUCAuU.................... len:20 al:3
.......................................................CACUGCUUAAAAGAGUCA...................... len:18 al:1
.......................................................CACUGCUUAAAAGAGUCACU.................... len:20 al:52
.......................................................CACUGCUUAAAAGAGUCgCU.................... len:20 al:2
.......................................................CACUGCUUAAAAGAGUCcCU.................... len:20 al:1
........................................................ACUGCUUAAAAGAGUCACc.................... len:19 al:1
........................................................ACUGCUUAAAAGAGUCACU.................... len:19 al:2