Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000035l:4808338-4808432 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_16477.ps.pdf
Locus Name: Cluster_16477
AGUUUUGAAUGAAAUUGUAGUGGCUCUUUUAAGUAGUUGAAUAAUUAAAUUUACUCACUGCUUAAAAGAGUCACUACAGCUUUGUCUUACUUUAC
........(((((.(((((((((((((((((((((((.((.(((......))).))))))))))))))))))))))))).))))).......... (-36.40)
AGUUUUGAAUGAAAUUGUAGa.......................................................................... len:21 al:2
AGUUUUGAAUGAAAUUGUAGg.......................................................................... len:21 al:1
AGUUUUGAAUGAAAUUGUAGU.......................................................................... len:21 al:3
.GUUUUGAAUGAAAUUGUAGU.......................................................................... len:20 al:123
.GUUUUGAAUGAAAUUGUAGa.......................................................................... len:20 al:6
.GUUUUGAAcGAAAUUGUAGU.......................................................................... len:20 al:2
.GUUUUGAuUGAAAUUGUAGU.......................................................................... len:20 al:1
.GUUUUGAAUGAgAUUGUAGU.......................................................................... len:20 al:1
.GUUUUGAgUGAAAUUGUAGU.......................................................................... len:20 al:1
.GUUUUGAAUGAAgUUGUAGU.......................................................................... len:20 al:3
.cUUUUGAAUGAAAUUGUAGU.......................................................................... len:20 al:17
..cUUUGAAUGAAAUUGUAGU.......................................................................... len:19 al:3
..UUcUGAAUGAAAUUGUAG........................................................................... len:18 al:1
..UUUUGAAUGAAgUUGUAGU.......................................................................... len:19 al:7
..UUUUGAAUGuAAUUGUAGU.......................................................................... len:19 al:1
..UUUUGAAUGAAAUcGUAGU.......................................................................... len:19 al:1
..UUUcGAAUGAAAUUGUAGU.......................................................................... len:19 al:1
..UUUUGAAUGAuAUUGUAGU.......................................................................... len:19 al:1
..UUUUGAAUGAAAUUGUAuU.......................................................................... len:19 al:1
..UUUUGAAUGAgAUUGUAGU.......................................................................... len:19 al:2
..UUcUGAAUGAAAUUGUAGU.......................................................................... len:19 al:3
..UUUUGAAUGAAAUUGUAG........................................................................... len:18 al:4
..UUUUGAAUGAAAUUGUgGU.......................................................................... len:19 al:1
..UUUUGAAUGAAAUUGUAGaG......................................................................... len:20 al:1
..aUUUGAAUGAAAUUGUAGU.......................................................................... len:19 al:1
..UUUUGgAUGAAAUUGUAGU.......................................................................... len:19 al:2
..UUUUGAAUGAAAUUGUAGg.......................................................................... len:19 al:2
..UUUUGAAUGAAAUUGU............................................................................. len:16 al:3
..UUUUGAAUGAAAUUGUAGa.......................................................................... len:19 al:13
..UUUUGAgUGAAAUUGUAGU.......................................................................... len:19 al:2
..UUUUGAAUGAAAUUGUAcU.......................................................................... len:19 al:1
..UUUUGAAUGAAAUUGcAGU.......................................................................... len:19 al:1
..UUUUGAAUGgAAUUGUAGU.......................................................................... len:19 al:2
..UUUUGAAUGAAAUUGUgG........................................................................... len:18 al:1
..UUUUGAAUGAAAUUGUAGU.......................................................................... len:19 al:727
...UUUGAAUGAAAUUGUAGU.......................................................................... len:18 al:152
...UUUGAAUGAAAUUGU............................................................................. len:15 al:3
...UUUGAAUGAAAUUGcAGU.......................................................................... len:18 al:3
...UUUGAgUGAAAUUGUAGU.......................................................................... len:18 al:1
...cUUGAAUGAAAUUGUAGU.......................................................................... len:18 al:2
...UUUGAAUGAAAUUGUAGa.......................................................................... len:18 al:7
...UcUGAAUGAAAUUGUAGU.......................................................................... len:18 al:1
......GAAUGAAAUUGUAGUGGCUCUUU.................................................................. len:23 al:2
.......AAUGAAAUUGUAGUGGCUCUUUU................................................................. len:23 al:4
.......AAUGAAAUUGUAGUGGCUCUUUUA................................................................ len:24 al:1
.......AAUGAAAUUGUgGUGGCUCUUUUAAGUAGU.......................................................... len:30 al:1
........AUGAAAUUGUAGUGGCUCUUUUAAGUAGc.......................................................... len:29 al:1
.........UGAAAUUGUAGUGGCUCUUUUAAGUAGUU......................................................... len:29 al:1
............AAUUGUAGUGGCUCUUUUAAGUAGUUGAA...................................................... len:29 al:2
............AAUUGUAGUGGCUCUUUU................................................................. len:18 al:2
.............AUUGUAGUGGCUCUUUUAAGUAGUUGAAUA.................................................... len:30 al:1
.............AUUGUAGUGGCUCUUUUAAGUAGUU......................................................... len:25 al:1
...................GUGGCUCUUUUAAGUAGUUGAAUAA................................................... len:25 al:1
...................GUGGCUCUUUUAAGUAGUUGAAU..................................................... len:23 al:1
...................GUGGCUCUUUUAAGUAGUUGAAUAAUU................................................. len:27 al:1
....................UGGCUCUUUUAAGUAGUUGAAUAAc.................................................. len:25 al:2
....................UGGCUCUUUUAAGUAGUUGAAUAA................................................... len:24 al:101
....................UGGCUCUUUUAAGUgGUUGAAUA.................................................... len:23 al:3
....................UGGCUCUUUUAAGUAGUUGAAUAuU.................................................. len:25 al:2
....................UGGCUCUUUUAAGUAGUUGgAU..................................................... len:22 al:1
....................UGGCUCUUUUAAGUAGUUGAgUA.................................................... len:23 al:2
....................aGGCUCUUUUAAGUAGUUGAAU..................................................... len:22 al:1
....................UGGCUCUUUUAAGUAGUUGAAgAA................................................... len:24 al:1
....................UGGCUCUUUUAAGUAGUUGAAcA.................................................... len:23 al:1
....................UGGCcCUUUUAAGUAGUUGAAUAA................................................... len:24 al:1
....................UGGCUCUUUUAAGUAGUUGA....................................................... len:20 al:2
....................UGGCUCUUUUAAGUAGUUGAgU..................................................... len:22 al:1
....................UGGCUCUUUUAAGUAGUUGAAUAAU.................................................. len:25 al:12
....................UGGCUCUUUUAAGUAGUUGAAUAg................................................... len:24 al:1
....................UGGCUCUUUUAAGUAGUUGAAa..................................................... len:22 al:1
....................UGGCUCUUUUAAGUA............................................................ len:15 al:1
....................UGGCUCUUUUAAGUAGUUGAgUAAUU................................................. len:26 al:1
....................UGGCUCUUUUAAGUAGUUGAAUgA................................................... len:24 al:1
....................UGGCUCUUUUAAGUAGUUGAAUAu................................................... len:24 al:2
....................UGGCUCUUUUAAGUAGUUGAAUAAUU................................................. len:26 al:5
....................UGGCUCUUUUAAGUAGUUGAAUA.................................................... len:23 al:150
....................UGGCUCUUUUcAGUAGUUGAAUAA................................................... len:24 al:1
....................UGGCUCUUUUAAGUAGUUGAAUAAa.................................................. len:25 al:2
....................UGGCUCUUUUAAGUAG........................................................... len:16 al:1
....................UGGCUCcUUUAAGUAGUUGAAUAA................................................... len:24 al:1
....................UGGCUCUUUUAAGUAGUUGAA...................................................... len:21 al:10
....................UaGCUCUUUUAAGUAGUUGAAU..................................................... len:22 al:1
....................UGGCUCUUUUAAGUAGUUGAAUAAUa................................................. len:26 al:2
....................UGGCUCUUUUAAGUAGUUGAAUu.................................................... len:23 al:4
....................UGGuUCUUUUAAGUAGUUGAAUA.................................................... len:23 al:1
....................UGGCUCUUUUAAGUAGUUGAAU..................................................... len:22 al:76
....................UGGCUCUUUUAAGUAGUUGAAUg.................................................... len:23 al:1
....................UGGCUCUUUUAAGUAGcUGAAUA.................................................... len:23 al:1
....................UGGCUCUUUUAAGUAGUUGAAUuA................................................... len:24 al:1
....................UGGCUCUUUUAAGUAGUUGgAUA.................................................... len:23 al:1
....................UGGCUCUUUUAgGUAGUUGAAUA.................................................... len:23 al:1
.....................GGCUCUUUUAAGUAGUUGAAU..................................................... len:21 al:10
.....................GGCUCUUUUAAGUAGUUGAgUAA................................................... len:23 al:1
.....................GGCUCUUUUAAGUAGUUGAAUAAUU................................................. len:25 al:2
.....................GGCUCUUUUAAGUAGUUGAA...................................................... len:20 al:1
.....................GGCUCUUUUAAGUAGUUGAAUAAUUu................................................ len:26 al:3
.....................GGCUCUUUUAAGUAGUUGAAUg.................................................... len:22 al:1
.....................GGCUCUUUUAAGUAGUUGAAc..................................................... len:21 al:2
.....................GGCUCUUUUAAGUAGUUGAAUAA................................................... len:23 al:15
.....................GGCUCUUUUAAGUAGUUGAAUA.................................................... len:22 al:6
.....................GGCUCUUUUAAGUAGUUGAAUu.................................................... len:22 al:1
......................GCUCUUUUAAGcAGUUGAAU..................................................... len:20 al:1
.......................CUCUUUUAAGUAGUUGgAUAA................................................... len:21 al:2
.......................CUCUUUUAAGUAGUUGgAU..................................................... len:19 al:1
.......................CUCUUUUAAGUAGUUGgAUAAU.................................................. len:22 al:2
........................UCUUUUAAGUAGUUGAAUAA................................................... len:20 al:1
........................UCUUUUAAGUAGUUGAAUAAU.................................................. len:21 al:1
........................UCUUUUAAGUAGUUGAAUA.................................................... len:19 al:1
........................UCUUUUAAGUAGUUGgA...................................................... len:17 al:2
........................UCUUUUAAGUAGUUGgAUAA................................................... len:20 al:10
........................UCUUUUAAGUAGUUGgAU..................................................... len:18 al:5
........................UCUUUUAAGUAGUUGAAU..................................................... len:18 al:1
........................UCUUUUAAGUAGUUGgAUAAU.................................................. len:21 al:1
........................UCUUUUAAGUAGUUGgAUA.................................................... len:19 al:5
.........................CUUUUAAGUAGUUGgAUA.................................................... len:18 al:1
.........................CUUUUAAGUAGUUGAAUAA................................................... len:19 al:1
..........................UUUUAAGUAGUUGAAUAAUU................................................. len:20 al:1
..........................UUUUAAGUAGUUGgAUAAU.................................................. len:19 al:1
............................UUAAGUAGUUGgAUAAUU................................................. len:18 al:2
...............................AGUAGUUGAAUAAUU................................................. len:15 al:1
..........................................AAUUAAAUUUACUCACUGCUUAAAAGA.......................... len:27 al:1
...........................................AUUAAAUUUACUCACUGCUUAA.............................. len:22 al:1
...........................................AUUAAAUUUACUCACUGCUUAAAAGAGUCAC..................... len:31 al:2
............................................UUAAAUUUACUCACUGCUUAAAAGAGUCACU.................... len:31 al:13
............................................UUAAAUUUACUCACUGCUUAAAAGAGUCcCU.................... len:31 al:1
............................................UUAAAUUUACUCACUGCUUAAAAGAGUCACa.................... len:31 al:1
............................................UUAAAUUUACUCACUGCUUAAAAGAGUCACc.................... len:31 al:1
..................................................UUACUCACUGCUUAAAAGA.......................... len:19 al:2
..................................................UUACUCACUGCUUAAAgGAGUCACU.................... len:25 al:2
..................................................UUACUCACUGCUUAAAAGAGUCACU.................... len:25 al:9
..................................................UUcCUCACUGCUUAAAAGAGUCACU.................... len:25 al:1
..................................................UUACUCACUGCUUAAAAGAGUCACc.................... len:25 al:1
...................................................UACUCACUGCUUAAAAGA.......................... len:18 al:5
...................................................UACUCACUGCUUAAAAGAGUCACU.................... len:24 al:1
...................................................UACUCACUcCUUAAAAGA.......................... len:18 al:1
....................................................ACUCACUGCUUAAAAGAG......................... len:18 al:1
....................................................ACUCACUGCUUAAAuGAGUCACU.................... len:23 al:2
....................................................ACUCACUGCUUAAAAGAGaCACU.................... len:23 al:2
....................................................ACUCACUGCUUAAAAGAGUCACUA................... len:24 al:8
....................................................ACUCACUGCUUAAAAGAGU........................ len:19 al:3
....................................................ACUCACUGCUUAAAAGAGcCACU.................... len:23 al:7
....................................................ACUCACUGCUUAAAAGAGUaACU.................... len:23 al:2
....................................................ACUCACUGuUUAAAAGAGUCACU.................... len:23 al:2
....................................................ACUCACUGCcUAAAAGAGUCACU.................... len:23 al:9
....................................................ACUCACUGCUcAAAAGA.......................... len:17 al:1
....................................................ACUCACUGCUUAAAAGgGUCACU.................... len:23 al:5
....................................................ACUCACUGCUUAAAAGAGUCACUAuA................. len:26 al:1
....................................................ACUCACUGCUUAAAAGAGUCACc.................... len:23 al:221
....................................................ACUCACUGCUUAAAA............................ len:15 al:2
....................................................ACUCACUGCUUAAAAGAGUCc...................... len:21 al:1
....................................................ACUCACaGCUUAAAAGAGUCACU.................... len:23 al:1
....................................................ACUCACUGCUUAAAAGAGUCAa..................... len:22 al:3
....................................................ACUCACUGCUUAAAAGAa......................... len:18 al:4
....................................................ACUCACUGCUcAAAAGAGUCACU.................... len:23 al:2
....................................................ACUCACUGCUUAAAAGAGUCACg.................... len:23 al:17
....................................................ACUCACUGCUUAAAAGAuUCACU.................... len:23 al:2
....................................................ACUCACUGCUUAAAAGAGUCACUAu.................. len:25 al:3
....................................................ACUCACUGCUUAAAAGAGUCA...................... len:21 al:8
....................................................ACUCgCUGCUUAAAAGAGUCAC..................... len:22 al:1
....................................................ACUCACUGCUUAAAAa........................... len:16 al:2
....................................................ACUCACUGCUUAAAAGAGUu....................... len:20 al:2
....................................................ACcCACUGCUUAAAAGAGUC....................... len:20 al:2
....................................................ACUCACUGCUUAAAAGAGUCACaA................... len:24 al:1
....................................................ACUCACUGCUUAAAAGA.......................... len:17 al:17
....................................................ACUCACUGCUUAAAAGAGUCACU.................... len:23 al:1784
....................................................ACUCACUGCUUAAAAGAGUCACUu................... len:24 al:88
....................................................ACUCACUGCUUAAAAG........................... len:16 al:9
....................................................gCUCACUGCUUAAAAG........................... len:16 al:1
....................................................ACUCACUGCUUAAAAGAGUC....................... len:20 al:23
....................................................ACUCgCUGCUUAAAAGAGUCACU.................... len:23 al:1
....................................................ACUCACUGCUUAgAAGAGUCACU.................... len:23 al:1
....................................................ACUCACUGCUUAAAAGAGUCAaU.................... len:23 al:3
....................................................ACUCACUGCUUAAAAGAGUCcCU.................... len:23 al:3
....................................................gCUCACUGCUUAAAAGAGUCACU.................... len:23 al:5
....................................................ACUCACUGCUUAAAAuAGUCAC..................... len:22 al:1
....................................................ACUCACUGCUUAAAAGAGUCAuU.................... len:23 al:22
....................................................ACUCACUGCUUAAAAGAGUCACUuC.................. len:25 al:1
....................................................ACUCACUaCUUAAAAGAGUCACU.................... len:23 al:1
....................................................ACUCACUGCUUAAAAGAGUCACUc................... len:24 al:8
....................................................ACUCACUGCUUAAcAGAGUCACU.................... len:23 al:1
....................................................gCUCACUGCUUAAAAGAGUCA...................... len:21 al:1
....................................................ACUCACUGCUUAAAAGAGUCACa.................... len:23 al:141
....................................................ACUCACUGCUUAAAAGAGUCACUAa.................. len:25 al:2
....................................................ACUCACUGCUUAAAAGAGUCAC..................... len:22 al:100
....................................................ACUCACcGCUUAAAAGAGUCACU.................... len:23 al:4
....................................................ACUCACUGCUUAAAAGAGUCgCU.................... len:23 al:8
....................................................ACUCACUGCUUAAgAGAGUCACU.................... len:23 al:3
....................................................ACUCACUGCUUAAAgGAGUCACU.................... len:23 al:11
....................................................ACUCACUGCUUAAAAGAGUuACU.................... len:23 al:1
....................................................ACcCACUGCUUAAAAGAGUCACU.................... len:23 al:12
....................................................ACUCACUGCUUAAAAGAGUCACcA................... len:24 al:7
....................................................ACUCACUGCUUAcAAGA.......................... len:17 al:1
....................................................ACUCACUGCUUAAAAGAGUCAu..................... len:22 al:15
....................................................ACUCcCUGCUUAAAAGAGUCACU.................... len:23 al:4
.....................................................CUCACUGCUUAAAAGAGUCgC..................... len:21 al:2
.....................................................CUCACUGCUUAAgAGAGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAgAGAGUCAC..................... len:21 al:1
.....................................................CUCACUGCUUcAAAGAGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAcAAGAGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGUCA...................... len:20 al:38
.....................................................CUCACUGCUUAAAAGAGUu....................... len:19 al:4
.....................................................CUCACUGCUUgAAAGAGUC....................... len:19 al:1
.....................................................CUCgCUGCUUAAAAGAGUCAC..................... len:21 al:1
.....................................................CUCACUGCUUAAAAGAGUCACc.................... len:22 al:142
.....................................................CUCACUGuUUAAAAGAGUCACU.................... len:22 al:2
.....................................................CUCACUaCUUAAAAGAGUCAC..................... len:21 al:1
.....................................................CUCACUGCUUAAAAGgGUCACU.................... len:22 al:5
.....................................................CUCACUaCUUAAAAGAGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAgGAGUCACU.................... len:22 al:5
.....................................................CUCACaGCUUAAAAGAGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGUCACU.................... len:22 al:1146
.....................................................CUCACUGCUUAAAgGAGUC....................... len:19 al:2
.....................................................CcCACUGCUUAAAAGAGUCACU.................... len:22 al:2
.....................................................CUCACUGCUUAAAAGAGUCAC..................... len:21 al:333
.....................................................CUCACUGCUUAAAAGAGcCAC..................... len:21 al:1
.....................................................CUCgCUGCUUAAAAGAGUCACU.................... len:22 al:6
.....................................................CUCACUGCUUAAAAGAGUuACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGU........................ len:18 al:32
.....................................................CUCACUGCUUAAAAGAGUCu...................... len:20 al:2
.....................................................CUCACUGCUUAAAAGAGUCAu..................... len:21 al:36
.....................................................CUCACUGCUUAgAAGAGUCACU.................... len:22 al:3
.....................................................CUCACUGCUUAAAAGAGUCg...................... len:20 al:1
.....................................................CUCACcGCUUAAAAGAGUCACU.................... len:22 al:3
.....................................................CUCACUGCUUAAAAGAGUCACUg................... len:23 al:1
.....................................................CUCACUGCUUAuAAGAGUCACU.................... len:22 al:1
.....................................................CcCACUGCUUAAAAGAGUCAC..................... len:21 al:3
.....................................................CUCACUGCUUAAAcGAGUCAC..................... len:21 al:1
.....................................................CUCACUGCUUAAAuGAGUCAC..................... len:21 al:1
.....................................................CUCACUGCUUAAAAGAGUCACg.................... len:22 al:17
.....................................................CUCACUGCUUAAAAGAGUCACa.................... len:22 al:137
.....................................................CUCACUGCUUAAAAGAGUCAuU.................... len:22 al:13
.....................................................CUCACUGCUUAAcAGAGUC....................... len:19 al:1
.....................................................CUCACUGCUUAAAAGAGUC....................... len:19 al:55
.....................................................CUCACUGCUUAAAAGAGUCACUu................... len:23 al:30
.....................................................CUCACUGCUUAAAAGAGUCACUA................... len:23 al:4
.....................................................CUCACUGCUUAAAAGAGUCAgU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGUCgCU.................... len:22 al:5
.....................................................CUCACUGCcUAAAAGAGUCACU.................... len:22 al:2
.....................................................CUCACUGCcUAAAAGAGUCAC..................... len:21 al:2
.....................................................CUCACUGCUUAAAAGAGaCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGUCACcA................... len:23 al:3
.....................................................CUCACUGCUUAAAAGAGUCACUuC.................. len:24 al:1
.....................................................CUCACUGCUUgAAAGAGUCACU.................... len:22 al:2
.....................................................CUCACUGCUUAAAAGAGUCcCU.................... len:22 al:3
.....................................................CUCACUGCUcAAAAGAGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAuUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGUCAa..................... len:21 al:7
.....................................................CUCACUGCUUAgAAGAGUCAC..................... len:21 al:1
.....................................................CUCACUGCaUAAAAGAGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGcGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGcCACU.................... len:22 al:6
......................................................UCACUGuUUAAAAGAGUCACU.................... len:21 al:1
......................................................UCACUGCUUAAAAGAGUCAaUA................... len:22 al:1
......................................................UCACUGCUUAAAAGAGUCACg.................... len:21 al:1
......................................................UCACUGCUUAAAAGAGUCACa.................... len:21 al:12
......................................................UCACUGCUUAAAAGgGUCACU.................... len:21 al:1
......................................................UCACUGCUUAAAAGAGUC....................... len:18 al:2
......................................................UCACUGCUUAAAAGAGUCgCU.................... len:21 al:1
......................................................UCACcGCUUAAAAGAGUCACU.................... len:21 al:1
......................................................UCACUGCUUAAAgGAGUCACU.................... len:21 al:1
......................................................UuACUGCUUAAAAGAGUCAC..................... len:20 al:2
......................................................UCACUGCUUAAAAGAGUCg...................... len:19 al:1
......................................................UCACUGCUUAAAAGAGUCAC..................... len:20 al:19
......................................................UCACUGCUUAgAAGAGUCACU.................... len:21 al:1
......................................................UCACUGCUUAAAAGAGUCACcA................... len:22 al:1
......................................................UCACUGCUUAAAAGAGUCACc.................... len:21 al:11
......................................................UCACUGCUUAAAAGAGUCA...................... len:19 al:5
......................................................UCACUGCUUAAAAGAGUCACU.................... len:21 al:113
......................................................UCACUGCUUAAAAGAGUCAu..................... len:20 al:2
.......................................................CACUGCUUAAAAGAGUCcCU.................... len:20 al:1
.......................................................CACUGCUUAAAAGAGUCACUACA................. len:23 al:2
.......................................................CACUGCUUAAAAGAGUCgCU.................... len:20 al:2
.......................................................CACUGCUUAAAAGAGUCAC..................... len:19 al:5
.......................................................CACUGCUUAAAAGAGUCACU.................... len:20 al:51
.......................................................CACUGCUUAAAAGAGUCACa.................... len:20 al:6
.......................................................CACUGCUUAAAAGAGUCA...................... len:18 al:1
.......................................................CACUGCUUAAAAGAGUCAuU.................... len:20 al:3
.......................................................CACUGCUUAAAAGAGUCACc.................... len:20 al:14
........................................................ACUGCUUAAAAGAGUCACU.................... len:19 al:2
........................................................ACUGCUUAAAAGAGUCACc.................... len:19 al:1