Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ptg000026l:8745540-8745635 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_15097.ps.pdf
Locus Name: Cluster_15097
CCAGGCUCUCAGUAUCACAUGGUAGAAGUCCUCAAUCACCCUCUUUACGCAGUGUGAUUGGAGACUUUUAUCGUGGCCUGAGUGCACUUUUCUGCC
..((((.(((((...(.(((((((((((((.((((((((.((........)).)))))))).)))))))))))))).))))).)).))........ (-36.90)
...................UGGUAGAAGUCCUCAAUCACCC....................................................... len:22 al:1
...................UGGUAGAAGUCCUCAAUCACCCU...................................................... len:23 al:11
...................UGGUAGAAGUCCUCgAUCACCCU...................................................... len:23 al:1
...................UGGUAGAAGUCCUCAAUCACCCc...................................................... len:23 al:2
...................UGGUAGAAGUCCUCAAUCACCCUu..................................................... len:24 al:1
....................GGUAGAAGUCCUCAAUCAC......................................................... len:19 al:1
....................GGUAGAAGUCCUCAAUCACCCUC..................................................... len:23 al:1
....................GGUAGAAGUCCUCAAUCACCCU...................................................... len:22 al:25
....................GGUAGAAGUCCUCAAUCACCCUCc.................................................... len:24 al:3
....................GGUAGAAGUCCUCAAUCACCCUCU.................................................... len:24 al:1
....................GGUAGAAGUCCUCAAUCACCCc...................................................... len:22 al:5
....................GGUAGAAGUCCUCAAUCACCC....................................................... len:21 al:2
......................UAGAgGUCCUCAAUC........................................................... len:15 al:1
..........................................CUUUACGCAGUGUGAUUGGAGACUUUUAU......................... len:29 al:1
..........................................CUUUACGCAGUGUGAUUGGAGACUUUUAUCG....................... len:31 al:1
...........................................UUUACGCAGUGUGAUUGGAGACUUUUAUCGU...................... len:31 al:1
..............................................ACGCAGUGUGAUUGGAGACUUUUAUCGU...................... len:28 al:1
...............................................CGCAGUGUGAUUGGAGACUUUUAUCGU...................... len:27 al:2
................................................GCAGUGUGAUUGGAGACUUUUAUCGU...................... len:26 al:1
.................................................CAGUGUGAUUGGAGACUUUUAU......................... len:22 al:2
.................................................CAGUGUGAUUGGAGACUUUUAUCGU...................... len:25 al:2
..................................................AGUGUGAUUGGAGACUUUUAUCGU...................... len:24 al:2
...................................................cUGUGAUUGGAGACUUUUAUCGU...................... len:23 al:1
....................................................UGUGAUUGGAGACUUUUAc......................... len:19 al:31
....................................................UGUGAUUGGAGACUUUUAUCGa...................... len:22 al:228
....................................................UGUGAUUaGAGACUUUUAUCG....................... len:21 al:1
....................................................UGUGAUUGGgGACUUUUAUC........................ len:20 al:2
....................................................UGUGAUUGGAGACUUUUAUCGUGcC................... len:25 al:2
....................................................UGUGAUcGGAGACUUUUAUCG....................... len:21 al:1
....................................................UaUGAUUGGAGACUUUUAU......................... len:19 al:1
....................................................UGUGAUUGGAGAuUUUUAUCG....................... len:21 al:2
....................................................UGUGcUUGGAGACUUUUAUCG....................... len:21 al:1
....................................................UGUGAUUGGAGgCUUUUAUC........................ len:20 al:1
....................................................UGUGAUUGGAGACUUUUAa......................... len:19 al:3
....................................................UGUGAUUGGAGgCUUUUAU......................... len:19 al:5
....................................................UGUGgUUGGAGACUUUUAUC........................ len:20 al:2
....................................................UGUGAaUGGAGACUUUUAUCGU...................... len:22 al:2
....................................................cGUGAUUGGAGACUUUUA.......................... len:18 al:1
....................................................UGUGAUUGGAGACUUUUAUCGg...................... len:22 al:127
....................................................UGUGAUUGGAGACUU............................. len:15 al:1
....................................................UGUGAUUGGAGACUUUUAUCGU...................... len:22 al:12146
....................................................UGUGAUUGGAuACUUUUAUC........................ len:20 al:1
....................................................UGUGAUUGGAGACUUUUAUCGUGu.................... len:24 al:1
....................................................UGUGAUUGGAGACUUUUAUCa....................... len:21 al:47
....................................................UGUGAUUGGuGACUUUUAUCGU...................... len:22 al:5
....................................................UGUGAUUGGAGACcUUUAUCGU...................... len:22 al:49
....................................................UGUGuUUGGAGACUUUUAUCGU...................... len:22 al:1
....................................................UGUGAUUGGgGACUUUUAU......................... len:19 al:5
....................................................UGUGAUaGGAGACUUUUAUCGU...................... len:22 al:4
....................................................UGUGAUUGGgGACUUUUAUCGU...................... len:22 al:49
....................................................UGgGAUUGGAGACUUUUAUCGU...................... len:22 al:3
....................................................UGUGAUUGGAGgCUUUUAUCGU...................... len:22 al:52
....................................................UGUaAUUGGAGACUUUUAUCGU...................... len:22 al:3
....................................................UGUuAUUGGAGACUUUUAUCGU...................... len:22 al:2
....................................................UGUGAUUGGAGACUUUUAUCuU...................... len:22 al:3
....................................................UGUGAUUGGAGACUUUcAUCGU...................... len:22 al:17
....................................................UGUGAUUGGAGACUUUUu.......................... len:18 al:2
....................................................UGUGAUUGGAGACUUUUAgCGU...................... len:22 al:2
....................................................UGUGAUgGGAGACUUUUAUCGU...................... len:22 al:1
....................................................UGcGAUUGGAGACUUUUAUCGU...................... len:22 al:32
....................................................UGUGAUUGGAGAuUUUUAU......................... len:19 al:2
....................................................UGUGAUUGGAGACUUUUcUCGU...................... len:22 al:8
....................................................UGUGAUUGGAaACUUUUAUCGU...................... len:22 al:4
....................................................UGUGAcUGGAGACUUUUAU......................... len:19 al:1
....................................................UGUGAUUGGcGACUUU............................ len:16 al:1
....................................................UGUGAUUaGAGACUUUUAUC........................ len:20 al:1
....................................................UGUGAUUGGAGgCUUUUA.......................... len:18 al:1
....................................................UGUGAUUGGAGACcUUUAU......................... len:19 al:1
....................................................UGUGAUUGGAGgCUUUUAUCG....................... len:21 al:3
....................................................aGUGAUUGGAGACUUUUAU......................... len:19 al:1
....................................................UGUGAUUGGAGAuUUUUAUC........................ len:20 al:2
....................................................UGUGAUUGGAGACUUUUAUC........................ len:20 al:423
....................................................UGUGAUUGGAGACUUUUAaCGU...................... len:22 al:1
....................................................UGUGAUcGGAGACUUUUAUCGU...................... len:22 al:19
....................................................UGUGAUUGGAGACUUUUAUg........................ len:20 al:3
....................................................UGUGAUUGGAGACUUUUAUCGUG..................... len:23 al:6
....................................................UGUGAUUGGAGACUUUUgUCGU...................... len:22 al:17
....................................................UGUGAUUGGAGACUUUaAUCGU...................... len:22 al:1
....................................................UGUGAUUGGAGACUcUUAU......................... len:19 al:1
....................................................UGUGAUUGGAGuCUUUUAUCGU...................... len:22 al:4
....................................................UGcGAUUGGAGACUUUUAUCG....................... len:21 al:2
....................................................cGUGAUUGGAGACUUUUAUCGU...................... len:22 al:46
....................................................UGUGgUUGGAGACUUUUA.......................... len:18 al:1
....................................................gGUGAUUGGAGACUUUUAUCGU...................... len:22 al:1
....................................................UGcGAUUGGAGACUUUUAUC........................ len:20 al:1
....................................................UGUGAUUaGAGACUUUUAUCGU...................... len:22 al:7
....................................................UGUGAUUGGAGACUUUcAU......................... len:19 al:1
....................................................UGUGAUUGGAGACUUUUAUu........................ len:20 al:10
....................................................UGUGAUUGGAGACUUUUuUCGU...................... len:22 al:2
....................................................UGUGAUUGGAuACUUUUAUCGU...................... len:22 al:4
....................................................UGUGAUUGGAGACUcUUAUCGU...................... len:22 al:30
....................................................UcUGAUUGGAGACUUUUAU......................... len:19 al:1
....................................................aGUGAUUGGAGACUUUUAUCGU...................... len:22 al:9
....................................................UGUGAUUGGAGACUUUcAUCG....................... len:21 al:1
....................................................UGUGgUUGGAGACUUUUAUCGU...................... len:22 al:54
....................................................UGUGAUUGGAGACUUUc........................... len:17 al:1
....................................................UaUGAUUGGAGACUUUUAUCGU...................... len:22 al:11
....................................................UGUaAUUGGAGACUUU............................ len:16 al:1
....................................................UGUGAUUGGAGACUUUUAUCGUa..................... len:23 al:198
....................................................UGUGAUUGGAGACUUUUAUCG....................... len:21 al:391
....................................................UGUGAUUGGcGACUUUUAUC........................ len:20 al:1
....................................................UGUGAUUGGAGACUgUUAUCGU...................... len:22 al:1
....................................................UGUGAUUGGAGACUUUUAU......................... len:19 al:851
....................................................UGUGAUUGGAGACUUUUAUCGUu..................... len:23 al:1326
....................................................UGUGAUUGGAGACcUUUAUCG....................... len:21 al:2
....................................................UGUGAUUGGcGACUUUUAUCGU...................... len:22 al:14
....................................................UGUGAUUGGAGACUUUUAcC........................ len:20 al:5
....................................................UGUGAUUuGAGACUUUUAUCGU...................... len:22 al:7
....................................................UGUGAUUGGAGACUUUUAUCGUGc.................... len:24 al:1
....................................................UGUGAUUGGAGACUUU............................ len:16 al:31
....................................................UGUGAUUGGAGACUUUUAUCGc...................... len:22 al:1325
....................................................UGUGAUUGGAGACUUUUA.......................... len:18 al:135
....................................................UGUGAUUGGAGACUUUUAUCaU...................... len:22 al:12
....................................................UGUGAUUGGAGACaUUUAUCGU...................... len:22 al:3
....................................................UGUGAUUGGAGACUUUUAUCc....................... len:21 al:2
....................................................UGUGAUUGGAGACgUUUAUCGU...................... len:22 al:1
....................................................UGUGAUUGGAGACUUaUAUCGU...................... len:22 al:2
....................................................UGUGAUUGGAGACUUUUAUa........................ len:20 al:2
....................................................UGUGAUUGaAGACUUUUAUCGU...................... len:22 al:5
....................................................UGUGAUUGGAGACUUUUcU......................... len:19 al:1
....................................................UGUGAUUGGAGACUUUUAUuGU...................... len:22 al:11
....................................................UGUGAUUGGAGAuUUUUAUCGU...................... len:22 al:4
....................................................UGUGAUUGGAGACUUcUAUCG....................... len:21 al:1
....................................................UGUGAUUGGAGACUUcUAUC........................ len:20 al:1
....................................................UGUGAUUGGAGACUUUUAUaGU...................... len:22 al:1
....................................................UGUGAUUGGAGACUaUUAUCGU...................... len:22 al:5
....................................................UGUGAUUGGAGACUUcUAUCGU...................... len:22 al:18
....................................................UGUGAUUGaAGACUUUUAU......................... len:19 al:1
....................................................UGUGgUUGGAGACUUUUAUCG....................... len:21 al:2
....................................................UGUGAUUGGAGACUUUUAcCGU...................... len:22 al:14
....................................................UGUGAUUGGAGAgUUUUAUCGU...................... len:22 al:1
....................................................UGUGAUUGGAGACUUUUAUCGUc..................... len:23 al:111
....................................................UGUGAUUGGAGACUUUUAUCcU...................... len:22 al:21
....................................................UGUGAUUGGcGACUUUUAU......................... len:19 al:1
....................................................UGUGAUUGGAGACUUgUAUCGU...................... len:22 al:2
....................................................UGUGAUUGGAGcCUUUUAUCGU...................... len:22 al:6
....................................................UGUGAUUGGAGACUUUUAUCu....................... len:21 al:6
....................................................cGUGAUUGGAGACUUUUAU......................... len:19 al:3
....................................................UGUGcUUGGAGACUUUUAUCGU...................... len:22 al:9
....................................................UGUGAUUGGgGACUUUUAUCG....................... len:21 al:1
....................................................UGUGAcUGGAGACUUUUAUCGU...................... len:22 al:14
....................................................UGUGAUUGGAGACUUc............................ len:16 al:2
....................................................UGUGAUUGGAGACUUUU........................... len:17 al:2
.....................................................GUGAUUGGAGACUUUUAUCGUa..................... len:22 al:3
.....................................................GUGAUUGGAGACUUUUAUC........................ len:19 al:1
.....................................................GUGAUUGGAGACUUUUAUCGUc..................... len:22 al:1
.....................................................GUGAUUGGAGACUUUUAUCGUu..................... len:22 al:8
.....................................................GUGAUUGGAGACUUUUAU......................... len:18 al:1
.....................................................GUGAUUGGAGACUUUUAUa........................ len:19 al:1
.....................................................GUGAUUGGAGACUUUUAUCGU...................... len:21 al:2
......................................................UGAUUGGAGACUUUUAUCGUa..................... len:21 al:2
......................................................UGAUUGGAGACUUUUAUCG....................... len:19 al:3
......................................................UGAUUGGAGACUUUcAUCGU...................... len:20 al:1
......................................................UGAUUGGAGACUUUUAUCGU...................... len:20 al:9
.......................................................GAUUGGAGACUUUUAUCGUu..................... len:20 al:1