Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ptg000025l:10668901-10668998 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_14610.ps.pdf
Locus Name: Cluster_14610
GUCUGAUACAUUUUACGAGAUGUUUUUUCGUAACAGCUUCAUAAAUUGAAUUAUAAAGCUUUUGUGAAGAAACACGUUGUGAAAUUUACUUCCAUCAG
..(((((..(((((((((..(((((((((((((.(((((.((((......)))).))))).)))))))))))))..)))))))))........))))) (-26.40)
GUCUGAUACAUUUUACGAGA.............................................................................. len:20 al:19
.UCUGAUACAUUUUACGAGA.............................................................................. len:19 al:1
..CUGAUACAUUUUACGAGA.............................................................................. len:18 al:1
....................UGUUUUUUCGUAACAGCUUC.......................................................... len:20 al:1
....................UGUUUUUUCGUAACAGCUUCAUu....................................................... len:23 al:3
....................UGUUUUUUCGUAACAGCUU........................................................... len:19 al:1
....................UGUUUUUUCGUAACAGCcUCAUA....................................................... len:23 al:2
....................UGUUUUUUCGUAACAGCUUCAUA....................................................... len:23 al:98
....................UGUUUUUUCGUAACAGCUUCAUAu...................................................... len:24 al:3
....................UGUUUUUUCGUAACAGCUUCAcA....................................................... len:23 al:2
....................UGUUUUUUCGUAACAGCUUCAUAAAU.................................................... len:26 al:1
....................UGUUUUUUCGUAACAGCUUCAUAuA..................................................... len:25 al:2
....................UGUUUUUUCGUAACuGCUUCAU........................................................ len:22 al:1
....................UGUUUUUUCGUAACAGCUUCAU........................................................ len:22 al:11
....................UGUUUUUUCGUAACAGCUUCA......................................................... len:21 al:2
....................UGUUUUUUCGUAACAGCUUCAc........................................................ len:22 al:1
....................UGUUUUUUCGUAACgGCUUCAUA....................................................... len:23 al:2
....................UGUUUUUUCGUAACAGCUcCAUA....................................................... len:23 al:1
....................UGUUUUUUCGUAACAGCUUCAUAAAUUGA................................................. len:29 al:2
....................UGUUUUUUCGUAACAGgUUCAUA....................................................... len:23 al:1
.....................uUUUUUUCGUAACAGCUUCAUA....................................................... len:22 al:1
......................UUUUUUCGUAACAGCUUCAUu....................................................... len:21 al:1
......................UUUUUUCGUAACAGCUUCAUA....................................................... len:21 al:1
......................UUUUUUCGUAACAGCUUC.......................................................... len:18 al:1
........................UUUUCGUAACAGCUUCAUAAAUUGAAU............................................... len:27 al:1
.....................................................UAAAGCUUUUGUGAuGAAACACG...................... len:23 al:2
.....................................................UAAAGCUUUUGUGAAGAAACACGc..................... len:24 al:11
.....................................................UAAAGCcUUUGUGAAGAAA.......................... len:19 al:2
.....................................................UAgAGCUUUUGUGAAGA............................ len:17 al:1
.....................................................UAAAGCUUUUGUGAAGAAACACu...................... len:23 al:42
.....................................................UAAAGCUUUUGUGAAGgAACACG...................... len:23 al:4
.....................................................UAAAGuUUUUGUGAAGAAACACG...................... len:23 al:1
.....................................................UAAAGCUUUUaUGAAGAAACA........................ len:21 al:1
.....................................................UAAAGCUUUUGUGAAGcAAC......................... len:20 al:2
.....................................................UAAAGuUUUUGUGAAGAAAC......................... len:20 al:1
.....................................................UAAAGCUUUUGUGAAGAAACACGg..................... len:24 al:2
.....................................................UAAAGCUUUUGUGAAGA............................ len:17 al:2
.....................................................UAAAGCUUUUGUGAgGAAACACG...................... len:23 al:9
.....................................................UAAAGCcUUUGUGAAGAAACACG...................... len:23 al:5
.....................................................UAAAGCUUUUGUGAAGAgACACG...................... len:23 al:2
.....................................................UAAAGCUUUUGUGAAGAAcC......................... len:20 al:1
.....................................................UAgAGCUUUUGUGAAGAAACACG...................... len:23 al:4
.....................................................UAAAGCUUUUGUGAAGAAACgCG...................... len:23 al:5
.....................................................cAAAGCUUUUGUGAAGAAACACG...................... len:23 al:2
.....................................................UAAAGCUUUUGUGAAGAAACACGaU.................... len:25 al:2
.....................................................UAAAGCUUUUGUGAAGAgA.......................... len:19 al:1
.....................................................UAAgGCUUUUGUGAAGAAACACG...................... len:23 al:8
.....................................................UAAAGCUcUUGUGAAGAAACAC....................... len:22 al:1
.....................................................UAAAGCcUUUGUGAAGAAAC......................... len:20 al:2
.....................................................UAAAGCUUUUGUGAcGAAACACG...................... len:23 al:1
.....................................................UAAAGCUUUUGUGAAGAAACA........................ len:21 al:22
.....................................................UAAAGCUUUUGUGAAGAAACAg....................... len:22 al:1
.....................................................UAAAGCUUUUGUGAAGAAACACGUU.................... len:25 al:2
.....................................................UAAAGCUUUUGUGgAGAAACACG...................... len:23 al:4
.....................................................UAAAGCUUUUGUGAAGAAACAaG...................... len:23 al:2
.....................................................UAAAGCUUUUGUGAAGAAACACGU..................... len:24 al:55
.....................................................cAAAGCUUUUGUGAAGAAAC......................... len:20 al:1
.....................................................UAAAGCUUUUGUGAAGAAACACG...................... len:23 al:1433
.....................................................UAAAGCUUUUGUGAAGAAACAC....................... len:22 al:15
.....................................................UAcAGCUUUUGUGAAGAAACACG...................... len:23 al:1
.....................................................UAAAGCUUUUGUGAAGAAgCACG...................... len:23 al:5
.....................................................UAAAGCUUUUGUGAAGAAA.......................... len:19 al:53
.....................................................UgAAGCUUUUGUGAAGAAACACG...................... len:23 al:5
.....................................................UAAAGCUcUUGUGAAGAAACACG...................... len:23 al:2
.....................................................gAAAGCUUUUGUGAAGAAACACG...................... len:23 al:1
.....................................................UAAAGCUUUUGUGAAGAAACAuG...................... len:23 al:1
.....................................................UAAAGCUUUUGUGAAGAAACACc...................... len:23 al:7
.....................................................UAAAGCUUUUGUGgAGAAAC......................... len:20 al:2
.....................................................UAAAGCUUUUGUGAAGAAAu......................... len:20 al:3
.....................................................UAAAGCcUUUGUGAAGAAACACGU..................... len:24 al:1
.....................................................UAAAGCUUUUGUGAAGAAAC......................... len:20 al:174
.....................................................aAAAGCUUUUGUGAAGAAAC......................... len:20 al:1
.....................................................UAAAGCUUUUGUGAA.............................. len:15 al:12
.....................................................UAAAGCUUUUGcGAAGAAACACG...................... len:23 al:7
.....................................................UAAAGCUUUUGUGAAGAg........................... len:18 al:2
.....................................................UAAAGCUUUUGUGAAGAA........................... len:18 al:9
.....................................................UAAAGCUUUUGUGAAGAgACAC....................... len:22 al:1
.....................................................UAAAGCUUUUGUGAAGAAcCACG...................... len:23 al:1
.....................................................UAAAGCUUUUGUGAAaAA........................... len:18 al:1
.....................................................UAAAGCUUUUGUGAAGAAACACa...................... len:23 al:216
.....................................................UAAAGCUUcUGUGAAGAAACACG...................... len:23 al:2
......................................................AAAGCUUUUGUGAAGAAACACa...................... len:22 al:3
......................................................AAAGCUUUUGUGAAGAAA.......................... len:18 al:1
......................................................AAAGCUUUUGUGAAGAAAC......................... len:19 al:4
......................................................AAAGCUUUUGUGAAGAAACACG...................... len:22 al:11
.......................................................AAGCUUUUGUGAAGAAAC......................... len:18 al:1
........................................................AGCUUUUGUGAAGAAACACG...................... len:20 al:1
.........................................................GCUUUUGUGAAGAAACACa...................... len:19 al:1
..........................................................CUUUUGUGAAGAAACACG...................... len:18 al:1