Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000026l:8745540-8745635 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_14476.ps.pdf
Locus Name: Cluster_14476
CCAGGCUCUCAGUAUCACAUGGUAGAAGUCCUCAAUCACCCUCUUUACGCAGUGUGAUUGGAGACUUUUAUCGUGGCCUGAGUGCACUUUUCUGCC
..((((.(((((...(.(((((((((((((.((((((((.((........)).)))))))).)))))))))))))).))))).)).))........ (-36.90)
...................UGGUAGAAGUCCUCAAUCACCCUu..................................................... len:24 al:1
...................UGGUAGAAGUCCUCAAUCACCC....................................................... len:22 al:1
...................UGGUAGAAGUCCUCAAUCACCCU...................................................... len:23 al:11
...................UGGUAGAAGUCCUCgAUCACCCU...................................................... len:23 al:1
...................UGGUAGAAGUCCUCAAUCACCCc...................................................... len:23 al:2
....................GGUAGAAGUCCUCAAUCACCCUCc.................................................... len:24 al:3
....................GGUAGAAGUCCUCAAUCACCC....................................................... len:21 al:2
....................GGUAGAAGUCCUCAAUCACCCc...................................................... len:22 al:5
....................GGUAGAAGUCCUCAAUCAC......................................................... len:19 al:1
....................GGUAGAAGUCCUCAAUCACCCU...................................................... len:22 al:21
....................GGUAGAAGUCCUCAAUCACCCUCU.................................................... len:24 al:1
....................GGUAGAAGUCCUCAAUCACCCUC..................................................... len:23 al:1
......................UAGAgGUCCUCAAUC........................................................... len:15 al:1
..........................................CUUUACGCAGUGUGAUUGGAGACUUUUAUCG....................... len:31 al:1
..........................................CUUUACGCAGUGUGAUUGGAGACUUUUAU......................... len:29 al:1
...........................................UUUACGCAGUGUGAUUGGAGACUUUUAUCGU...................... len:31 al:1
............................................UUAuGCAGUGUGAUUGGAGACUUUUAUC........................ len:28 al:1
..............................................AuGCAGUGUGAUUGGAGACUUUUAUCGU...................... len:28 al:2
..............................................ACGCAGUGUGAUUGGAGACUUUUAUCGU...................... len:28 al:1
...............................................CGCAGUGUGAUUGGAGACUUUUAUCGU...................... len:27 al:2
................................................GCAGUGUGAUUGGAGACUUUUAUCGU...................... len:26 al:1
.................................................CAGUGUGAUUGGAGACUUUUAU......................... len:22 al:2
.................................................CAGUGUGAUUGGAGACUUUUAUCGU...................... len:25 al:2
..................................................AGUGUGAUUGGAGACUUUUAUCGU...................... len:24 al:2
...................................................cUGUGAUUGGAGACUUUUAUCGU...................... len:23 al:1
....................................................UGUGAUUGGAGACUUUUAcCG....................... len:21 al:1
....................................................UGUGAUUGaAGACUUUUAU......................... len:19 al:1
....................................................aGUGAUUGGAGACUUUUAUCGU...................... len:22 al:6
....................................................UGUGgUUGGAGACUUUUAUCGU...................... len:22 al:53
....................................................UGUGAUUGGAGACUUUUAUC........................ len:20 al:372
....................................................UaUGAUUGGAGACUUUUAU......................... len:19 al:1
....................................................UGUGAUcGGAGACUUUUAUCGU...................... len:22 al:18
....................................................UGUGAUUaGAGACUUUUAUCG....................... len:21 al:1
....................................................UGUGAUUuGAGACUUUUAUCGU...................... len:22 al:7
....................................................UGUGAUUGGuGACUUUUAUCGU...................... len:22 al:5
....................................................UGUGAUUaGAGACUUUUAUCGU...................... len:22 al:7
....................................................UGUGAUUGGAGACUUUc........................... len:17 al:1
....................................................UGUGAUUGGcGACUUUUAUCGU...................... len:22 al:14
....................................................UGUGAUUGGgGACUUUUAUCG....................... len:21 al:1
....................................................UGUGAUUGGAGgCUUUUA.......................... len:18 al:1
....................................................UGUGAUUGGcGACUUU............................ len:16 al:1
....................................................UGUGAUUGGAGACaUUUAUCGU...................... len:22 al:3
....................................................UGUGAUUGGAGACUUUUAUg........................ len:20 al:3
....................................................UGUGAUUGGAGACUUUcAUCGU...................... len:22 al:17
....................................................UGUGAUUGGAGACUUUUAUCGUGcC................... len:25 al:2
....................................................UGUGAUUGGAGACUUUUAc......................... len:19 al:30
....................................................UGUGAUUGGAGACUUUUAUCGUGu.................... len:24 al:2
....................................................UGUGAUUGGAGcCUUUUAUCGU...................... len:22 al:6
....................................................UGUGAUUGGAGACUgUUAUCGU...................... len:22 al:1
....................................................aGUGAUUGGAGACUUUUAU......................... len:19 al:1
....................................................UGUGAUUGGAGACUUUUAcC........................ len:20 al:5
....................................................UGUGAUUGGAGACUUUUAcCGU...................... len:22 al:13
....................................................UGUuAUUGGAGACUUUUAUCGU...................... len:22 al:1
....................................................UGUGAUaGGAGACUUUUAUCGU...................... len:22 al:4
....................................................UGUGAUUGGAGACUUUaAUCGU...................... len:22 al:1
....................................................UGUGAUUGaAGACUUUUAUCGU...................... len:22 al:5
....................................................UGUGAUUGGAGgCUUUUAUCG....................... len:21 al:3
....................................................UGUGAUUGGAGACUcUUAU......................... len:19 al:1
....................................................UGUGAUUGGgGACUUUUAUC........................ len:20 al:2
....................................................UGUGAUUGGAGACUUUUAUu........................ len:20 al:7
....................................................UGUGAUUGGAGACUUUUAUCuU...................... len:22 al:3
....................................................cGUGAUUGGAGACUUUUA.......................... len:18 al:1
....................................................UGUGAUUGGAGACUcUUAUCGU...................... len:22 al:28
....................................................UGUGAUcGGAGACUUUUAUCG....................... len:21 al:1
....................................................UGUGAUUGGAGACUUUUAUuGU...................... len:22 al:13
....................................................UGUGAUUGGAGuCUUUUAUCGU...................... len:22 al:4
....................................................UGUGAUUaGAGACUUUUAUC........................ len:20 al:1
....................................................UGUGuUUGGAGACUUUUAUCGU...................... len:22 al:1
....................................................UaUGAUUGGAGACUUUUAUCGU...................... len:22 al:10
....................................................UGUGAUUGGAGACUUUUAUCu....................... len:21 al:6
....................................................UGUGAUUGGAaACUUUUAUCGU...................... len:22 al:3
....................................................UGcGAUUGGAGACUUUUAUC........................ len:20 al:1
....................................................UGUGAUUGGAGACUUUUcUCGU...................... len:22 al:8
....................................................UGUGAUUGGAGACUUgUAUCGU...................... len:22 al:2
....................................................UGUGAUUGGAGACUUUUAUCGc...................... len:22 al:1342
....................................................UGUGAUUGGAGACgUUUAUCGU...................... len:22 al:1
....................................................UGUGgUUGGAGACUUUUA.......................... len:18 al:1
....................................................UGUGAUUGGAGACUUUUAUaGU...................... len:22 al:1
....................................................UGUGAUUGGAGACUaUUAUCGU...................... len:22 al:5
....................................................UGUGAUUGGcGACUUUUAUC........................ len:20 al:1
....................................................UGUGgUUGGAGACUUUUAUCG....................... len:21 al:1
....................................................UGUGAUUGGAGACUUUUAUCGU...................... len:22 al:12177
....................................................UGUGAUUGGAGACUUUUAUCGg...................... len:22 al:134
....................................................UGcGAUUGGAGACUUUUAUCGU...................... len:22 al:35
....................................................UGUGAaUGGAGACUUUUAUCGU...................... len:22 al:2
....................................................UGUaAUUGGAGACUUUUAUCGU...................... len:22 al:3
....................................................UGUGAUUGGAGACcUUUAUCG....................... len:21 al:2
....................................................UGUGAUUGGgGACUUUUAU......................... len:19 al:5
....................................................UGUGAUUGGAGAuUUUUAUCG....................... len:21 al:2
....................................................UGUGAUUGGAGACcUUUAU......................... len:19 al:1
....................................................UGUGAUUGGAGACUUUUcU......................... len:19 al:1
....................................................UGUGAUUGGAGgCUUUUAUCGU...................... len:22 al:51
....................................................UGUGAUUGGAGACUUUUAUCaU...................... len:22 al:34
....................................................UGUGAUUGGAGACUUUUAUCG....................... len:21 al:367
....................................................UGUGAUUGGAuACUUUUAUCGU...................... len:22 al:4
....................................................UGUGAUUGGAGACUUUUAaCGU...................... len:22 al:1
....................................................UGUGAUUGGAGACUUUUAUa........................ len:20 al:1
....................................................UGUGAUUGGAGACUUUUgUCGU...................... len:22 al:16
....................................................cGUGAUUGGAGACUUUUAUCGU...................... len:22 al:48
....................................................UGUGAUUGGAGACUUUUAUCGa...................... len:22 al:221
....................................................UGUGAUUGGAGgCUUUUAU......................... len:19 al:5
....................................................UGUGAUUGGAuACUUUUAUC........................ len:20 al:1
....................................................UGUGAUUGGAGACUUcUAUC........................ len:20 al:1
....................................................UGUGAUUGGAGACUUUUAUCGUc..................... len:23 al:106
....................................................UGUGAUUGGAGgCUUUUAUC........................ len:20 al:1
....................................................UGgGAUUGGAGACUUUUAUCGU...................... len:22 al:3
....................................................UGUGAUUGGAGACUUUUAUCcU...................... len:22 al:19
....................................................UGUGAUUGGAGAuUUUUAUCGU...................... len:22 al:4
....................................................UGUGAcUGGAGACUUUUAUCGU...................... len:22 al:13
....................................................UGUGAUUGGAGAuUUUUAUC........................ len:20 al:2
....................................................UGUGcUUGGAGACUUUUAUCG....................... len:21 al:1
....................................................UGUGAUUGGAGACcUUUAUCGU...................... len:22 al:49
....................................................UGUGAUUGGAGACUUcUA.......................... len:18 al:1
....................................................UGUGAUUGGgGACUUUUAUCGU...................... len:22 al:51
....................................................UGUGAUUGGAGACUUU............................ len:16 al:28
....................................................cGUGAUUGGAGACUUUUAU......................... len:19 al:2
....................................................UGUGAUUGGAGACUU............................. len:15 al:2
....................................................UGUGAUUGGAGACUUUUAa......................... len:19 al:3
....................................................UGUGAUUGGAGACUUUUAUCGUu..................... len:23 al:1307
....................................................UGUGAUUGGAGACUUcUAUCGU...................... len:22 al:18
....................................................UGUGAUUGGAGACUUUUAUCa....................... len:21 al:50
....................................................UGcGAUUGGAGACUUUUAUCG....................... len:21 al:2
....................................................UcUGAUUGGAGACUUUUAU......................... len:19 al:1
....................................................cGUGAUUGGAGACUUUUAUC........................ len:20 al:1
....................................................UGUGcUUGGAGACUUUUAUCGU...................... len:22 al:9
....................................................UGUGAUUGGAGACUUUUAgCGU...................... len:22 al:2
....................................................UGUaAUUGGAGACUUU............................ len:16 al:1
....................................................UGUGAUUGGAGACUUUUAUCGUGc.................... len:24 al:1
....................................................UGUGAUUGGAGACUUaUAUCGU...................... len:22 al:2
....................................................UGUGAUUGGAGAgUUUUAUCGU...................... len:22 al:1
....................................................UGUGAUUGGAGAuUUUUAU......................... len:19 al:2
....................................................UGUGAUUGGAGACUUUUAUCGUG..................... len:23 al:6
....................................................UGUGAUUGGAGACUUcUAUCG....................... len:21 al:1
....................................................UGUGAUUGGAGACUUUUAU......................... len:19 al:747
....................................................UGUGAUgGGAGACUUUUAUCGU...................... len:22 al:1
....................................................gGUGAUUGGAGACUUUUAUCGU...................... len:22 al:1
....................................................UGUGAUUGGAGACUUUUAUCc....................... len:21 al:2
....................................................UGUGAUUGGAGACUUUU........................... len:17 al:4
....................................................UGUGAUUGGAGACUUUcAUCG....................... len:21 al:1
....................................................UGUGAUUGGAGACUUUUA.......................... len:18 al:128
....................................................UGUGAUUGGAGACUUUUu.......................... len:18 al:2
....................................................UGUGAUUGGAGACUUc............................ len:16 al:2
....................................................UGUGAUUGGAGACUUUUAUCGUa..................... len:23 al:200
....................................................UGUGAUUGGAGACUUUUuUCGU...................... len:22 al:2
.....................................................GUGAUUGGAGACUUUUAUa........................ len:19 al:1
.....................................................GUGAUUGGAGACUUUUAU......................... len:18 al:1
.....................................................GUGAUUGGAGACUUUUAUCGUc..................... len:22 al:1
.....................................................GUGAUUGGAGACUUUUAUCGU...................... len:21 al:2
.....................................................GUGAUUGGAGACUUUUAUC........................ len:19 al:1
.....................................................GUGAUUGGAGACUUUUAUCGUa..................... len:22 al:1
.....................................................GUGAUUGGAGACUUUUAUCGUu..................... len:22 al:8
......................................................UGAUUGGAGACUUUUAUCGUa..................... len:21 al:2
......................................................UGAUUGGAGACUUUcAUCGU...................... len:20 al:1
......................................................UGAUUGGAGACUUUUAUCGU...................... len:20 al:8
......................................................UGAUUGGAGACUUUUAUCG....................... len:19 al:4
.......................................................GAUUGGAGACUUUUAUCGUu..................... len:20 al:1