Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ptg000024l:5256454-5256549 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_14165.ps.pdf
Locus Name: Cluster_14165
GGCAUCUGUGAACUCCAGCCUACAUGUGCUGCACUGGAACUCUUUAGCAAGACAUUCCAUGGCAGCUGUGUGCGCUAGGGCUUCACCUUUUUCAGG
.......(((((.((((((.((((((.(((((..(((((.((((....))))..)))))..))))))))))).))).))).))))).......... (-33.10)
GGCAUCUGUGAACUCCAGCa............................................................................ len:20 al:1
GGCAUCUGUGAACUCCAGCu............................................................................ len:20 al:3
GGCAUCUGUGAACUCCAGCCa........................................................................... len:21 al:3
GGCAUCUGUGAACUCCcGCC............................................................................ len:20 al:1
GGCAUCUGUGAACUCCAGCC............................................................................ len:20 al:5
GGCAUCUGUGAAuUCCAGCC............................................................................ len:20 al:2
GGCAUCUGUGAACUCCgGCC............................................................................ len:20 al:1
.GCAUCUGUGAACUCCAGCu............................................................................ len:19 al:21
.GCAUCUGUGAACUCCAGCC............................................................................ len:19 al:53
.GCAUCUGgGAACUCCAGCC............................................................................ len:19 al:1
.GCAUCUGUGAACUCCAGCg............................................................................ len:19 al:1
.GCAUCUGUGAACUCCAGC............................................................................. len:18 al:2
.GCAUCUGUGAACUCCAGCa............................................................................ len:19 al:2
.GCAUCUGUGAACUCCAGCCa........................................................................... len:20 al:2
.GCgUCUGUGAACUCCAGCC............................................................................ len:19 al:1
..CAUCUGUGAACUCCAGCu............................................................................ len:18 al:1
..CuUCUGUGAACUCCAGCC............................................................................ len:18 al:1
..CAUCUGUGAACUCCAGCC............................................................................ len:18 al:21
..CAUCUGUGAACUCCAGCa............................................................................ len:18 al:2
...AUCUGUGAACUCCAGCC............................................................................ len:17 al:1
...................CUACAUGUGCUGCACUGGAACU....................................................... len:22 al:4
...................CUACAUGUGCUGCACUGGAACUC...................................................... len:23 al:2
...................CUACAUGUGCUGCACUGGAACUCU..................................................... len:24 al:3
...................CUACAUGUGCUGCACUGGA.......................................................... len:19 al:2
...................CUACAUGUGCUGCACUGGAACUCUUUAGC................................................ len:29 al:1
....................UACAUGUGCUGCACUGGAACcCUU.................................................... len:24 al:1
....................gACAUGUGCUGCACUGGAACU....................................................... len:21 al:1
....................UACAUGUGCUGCACUGGAuCU....................................................... len:21 al:1
....................UACAUGUGCUGCACUGGAACUCaUU................................................... len:25 al:103
....................UACAUGUGCUGCACaGGAACUCUU.................................................... len:24 al:2
....................UACAUGUGCUGCACUGGAACUCgU.................................................... len:24 al:2
....................UACAUGcGCUGCACUGGAACUCUU.................................................... len:24 al:1
....................UACAUGUGCcGCACUGGAACUCU..................................................... len:23 al:38
....................UACgUGUGCUGCACUGGAACUCU..................................................... len:23 al:28
....................UACAUGUGCUGCACaGGAACU....................................................... len:21 al:2
....................UACAUGUGuUGCACUGGAACUCU..................................................... len:23 al:10
....................UACAUGUGCUGCACUGGAACcC...................................................... len:22 al:5
....................UACAcGUGCUGCACUGGAACUCU..................................................... len:23 al:24
....................UACAUGUGCUGCACUGGAgCU....................................................... len:21 al:19
....................UACAUGUGCcGCACUGGAACUCUUU................................................... len:25 al:2
....................UACAUGUGCUGCACUGGAACUCa..................................................... len:23 al:731
....................UACAcGUGCUGCACUGGAA......................................................... len:19 al:1
....................UACAUGUGCUGCACUaGAACU....................................................... len:21 al:5
....................UACAUGUGCUGCACU............................................................. len:15 al:15
....................UACAUGUcCUGCACUGGAACU....................................................... len:21 al:1
....................UACcUGUGCUGCACUGGAACU....................................................... len:21 al:2
....................UACAUGUGCUGCAaUGGAACU....................................................... len:21 al:1
....................UACAUGUGCUGCACUGGu.......................................................... len:18 al:5
....................UACAUGUGCUaCACUGGAACU....................................................... len:21 al:3
....................UACAUGUGCUGCACUaGAACUCUU.................................................... len:24 al:1
....................UACAUGUGCcGCACUGGAACU....................................................... len:21 al:10
....................UACAgGUGCUGCACUGGAACUCU..................................................... len:23 al:1
....................UACAUGUaCUGCACUGGAACUCU..................................................... len:23 al:10
....................UACAUGUGCUGCgCUGGAACUC...................................................... len:22 al:4
....................UACAUGUGCUGCACUGGAcCUCUU.................................................... len:24 al:1
....................UACAUGUGCUaCACUGGAACUCUUU................................................... len:25 al:1
....................UACAUGaGCUGCACUGGAACUCU..................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAACUCUUUAGC................................................ len:28 al:12
....................UACAUGUGCUGCACUGGAACUa...................................................... len:22 al:25
....................UACAUGUGCUGCgCUGGAACUCU..................................................... len:23 al:24
....................UACAUGUGCUGCACUGGuACU....................................................... len:21 al:1
....................UACAUGUGCUGCACUG............................................................ len:16 al:2
....................UACAUGUGCUGCACUGGAAu........................................................ len:20 al:42
....................UACAUGUGCUcCACUGGAACUCUUU................................................... len:25 al:1
....................UACAUGUGCUaCACUGGAAC........................................................ len:20 al:1
....................UACAUGUGCUGCACUGGcACUCU..................................................... len:23 al:2
....................UACAUGUGCUGCACUGGAACg....................................................... len:21 al:26
....................UACAaGUGCUGCACUGGAACU....................................................... len:21 al:3
....................UACgUGUGCUGCACUGGAACUCUUU................................................... len:25 al:3
....................UACAUGUGCUGCACUuGAACUCUU.................................................... len:24 al:1
....................UACAUGUGCUGCACUaGA.......................................................... len:18 al:1
....................UACAUGUGCUGCACcGGAACUC...................................................... len:22 al:2
....................UACAUGUGCUGCACUGGAACUC...................................................... len:22 al:685
....................UACAUGUGCUGCACUGGuACUCUU.................................................... len:24 al:2
....................UACAUGUGCUGCACUGGAACUCcU.................................................... len:24 al:3
....................UACAUGUGCUGCACUGGAACUCUUUAG................................................. len:27 al:1
....................UACAUGUGCUGCACUGGuACUC...................................................... len:22 al:1
....................UACAUGUGCUGCACUGaAACUCUUU................................................... len:25 al:2
....................UACAUGUGCUGCACUGGAACUCUUUAGCAAG............................................. len:31 al:2
....................UACcUGUGCUGCACUGGAACUCU..................................................... len:23 al:10
....................UACAUGUGCUGCACUGGAACUCUUUc.................................................. len:26 al:3
....................UACAUGUGCUGCgCUGGA.......................................................... len:18 al:1
....................UACuUGUGCUGCACUGGAACUCU..................................................... len:23 al:2
....................UACAUGUGCUGCACUGGAACUCUg.................................................... len:24 al:8
....................UACgUGUGCUGCACUGGAAC........................................................ len:20 al:2
....................cACAUGUGCUGCACUGGAACUCUU.................................................... len:24 al:1
....................UcCAUGUGCUGCACUGGAACU....................................................... len:21 al:2
....................UACAUGUGCUGCACUGGAACUCUc.................................................... len:24 al:78
....................UACAUGUGCUaCACUGGAACUC...................................................... len:22 al:1
....................UACAcGUGCUGCACUGGAACUC...................................................... len:22 al:3
....................UACAUGUGCUGCACUGGAAuUCUU.................................................... len:24 al:3
....................UACAUGUGCUGCACUGaAACUC...................................................... len:22 al:1
....................UACAUGUGCUGCACUGGAu......................................................... len:19 al:8
....................UuCAUGUGCUGCACUGGAACUCU..................................................... len:23 al:4
....................UACAUGUGCcGCACUGGAACUC...................................................... len:22 al:4
....................UACAUGUGCUGCACUGaAACUCUU.................................................... len:24 al:2
....................UACAUGcGCUGCACUGGAACUC...................................................... len:22 al:1
....................UACAUGUGCUGCACUGGAACUCUUUuGC................................................ len:28 al:4
....................UACAUGUGCUGCACcGGA.......................................................... len:18 al:1
....................UACAUGUGCUGuACUGGA.......................................................... len:18 al:1
....................UACAUGUGCUGCACcGGAAC........................................................ len:20 al:4
....................UACAUGUGCUGCACaGGAACUCU..................................................... len:23 al:3
....................UACAUGUGCUGCACUGGAAgU....................................................... len:21 al:1
....................UACAUGUGCUGCAuUGGAAC........................................................ len:20 al:1
....................UACAcGUGCUGCACUGGAACU....................................................... len:21 al:17
....................UACAUGUGCUGCACUGGAACa....................................................... len:21 al:187
....................UACgUGUGCUGCACUGGAACUCUU.................................................... len:24 al:5
....................UcCAUGUGCUGCACUGGAACUCU..................................................... len:23 al:7
....................cACAUGUGCUGCACUGGAACUCUUU................................................... len:25 al:1
....................UACAUGUGCUGCACUGGgACUCUU.................................................... len:24 al:2
....................UACAUGUGCUGCACUGGAACUuUUU................................................... len:25 al:2
....................UACAUGUGCUGCcCUGGAACU....................................................... len:21 al:1
....................UACAUGUGCUGCACUGGAACUCcUU................................................... len:25 al:1
....................UACAUGUGCUaCACUGGAACUCU..................................................... len:23 al:12
....................UACAUGUGCUGCACUGGAAuU....................................................... len:21 al:3
....................UACuUGUGCUGCACUGGAACUCUUU................................................... len:25 al:1
....................UACAUGcGCUGCACUGGAACUCU..................................................... len:23 al:27
....................UACAUGUGaUGCACUGGAACUCU..................................................... len:23 al:1
....................UAuAUGUGCUGCACUGGAACUC...................................................... len:22 al:3
....................UACAUGUGCUGCACUGGAcCUCU..................................................... len:23 al:5
....................UACAUGUGCUGCAuUGGAACUCUUU................................................... len:25 al:1
....................UACAUGUGCUGCACUGGgACUCUUU................................................... len:25 al:3
....................UACAUGUGCUGCgCUGGAACUCUU.................................................... len:24 al:2
....................UACAUGUGCUcCACUGGAACU....................................................... len:21 al:1
....................UACAUGUGCUGCACUGGAACUCUUUA.................................................. len:26 al:14
....................UACAUGUGCUGCACcGGAACU....................................................... len:21 al:9
....................UACAUGUGCUGCACUGGAACUCUUUAGCA............................................... len:29 al:3
....................UACAUGUGuUGCACUGGAACU....................................................... len:21 al:2
....................UACAUGUGgUGCACUGGAACU....................................................... len:21 al:2
....................UACAUGUGCUaCACUGGAACUCUU.................................................... len:24 al:2
....................UACAUGUGCUGCACUGGA.......................................................... len:18 al:476
....................UACAUGUGCUGCAuUGGAACUCUU.................................................... len:24 al:1
....................UACAUGUGCgGCACUGGAACU....................................................... len:21 al:1
....................UACAUGUGCUGCACUGGAACUu...................................................... len:22 al:89
....................UACAUGUGCUGCAaUGGAACUCUU.................................................... len:24 al:1
....................UACAUGUGCUGCACUGGAACUCUa.................................................... len:24 al:313
....................UACAUGUGCUGCAuUGGAACU....................................................... len:21 al:2
....................UgCAUGUGCUGCACUGGAAC........................................................ len:20 al:1
....................UgCAUGUGCUGCACUGGAA......................................................... len:19 al:1
....................UgCAUGUGCUGCACUGGA.......................................................... len:18 al:1
....................aACAUGUGCUGCACUGGAACUCU..................................................... len:23 al:4
....................UACAUGUGCcGCACUGGAA......................................................... len:19 al:2
....................UAuAUGUGCUGCACUGGAACU....................................................... len:21 al:3
....................UgCAUGUGCUGCACUGGAACUCUU.................................................... len:24 al:4
....................UACAUGUGCUaCACUGGA.......................................................... len:18 al:2
....................UACAUGUGCUGCACUGGAACUuUU.................................................... len:24 al:3
....................UACAUGUGCUGCACUGGAACUCU..................................................... len:23 al:7420
....................UACAUGUGCUGCACUGGAgCUC...................................................... len:22 al:1
....................UACAUGUGCUGCACUGGAA......................................................... len:19 al:87
....................cACAUGUGCUGCACUGGAACU....................................................... len:21 al:5
....................UcCAUGUGCUGCACUGGAAC........................................................ len:20 al:1
....................UACAgGUGCUGCACUGGAACU....................................................... len:21 al:1
....................UACAUGUGCUGCACUGGAAuUCU..................................................... len:23 al:6
....................UACAUaUGCUGCACUGGAACUCUU.................................................... len:24 al:1
....................cACAUGUGCUGCACUGGA.......................................................... len:18 al:2
....................UACAUGUGCUGCACUGGAACcCU..................................................... len:23 al:38
....................UAuAUGUGCUGCACUGGAACUCU..................................................... len:23 al:2
....................UACAcGUGCUGCACUGGAACUCUUU................................................... len:25 al:1
....................UACAUGgGCUGCACUGGAACU....................................................... len:21 al:1
....................UACAUGUGuUGCACUGGAAC........................................................ len:20 al:1
....................UACAUGcGCUGCACUGGAACU....................................................... len:21 al:6
....................UACAUGUGCUGCACUGGAACUCg..................................................... len:23 al:79
....................UACAUGUGCUGCACUGGAAa........................................................ len:20 al:5
....................UACAUGUGCUGCACUGGAgCUCUU.................................................... len:24 al:3
....................UACAUGUGCUGaACUGGAAC........................................................ len:20 al:1
....................UACAcGUGCUGCACUGGA.......................................................... len:18 al:1
....................UACAUGUGCUGCACUGGAACUCUUUAGa................................................ len:28 al:1
....................UACAUGUGCUGCACUGGgAC........................................................ len:20 al:3
....................UACAUGcGCUGCACUGGAAC........................................................ len:20 al:2
....................UACAUGUGCUGCACUGGgACUCU..................................................... len:23 al:31
....................UACAUGUGCUGCACUGGAACUCUcU................................................... len:25 al:6
....................UACgUGUGCUGCACUGGAACU....................................................... len:21 al:6
....................UACAUGUGCUGCACUGG........................................................... len:17 al:5
....................UACAUGUGCUGCACUGGAACUg...................................................... len:22 al:2
....................UACAUGUGCaGCACUGGAACUCU..................................................... len:23 al:3
....................UACAUGUGCUGCACUGGAACaCU..................................................... len:23 al:7
....................UgCAUGUGCUGCACUGGAACUC...................................................... len:22 al:3
....................UACAUGcGCUGCACUGGA.......................................................... len:18 al:3
....................UACAUGUGCUGuACUGGAACUCU..................................................... len:23 al:10
....................UACAUGUGCUGCACUGGAACUCaUUA.................................................. len:26 al:2
....................UACAUGUGCUGCACUGGAACUCUUU................................................... len:25 al:214
....................UACAUGUGCUGCACUGGAACUCaU.................................................... len:24 al:189
....................UACAUGUGCUGCACaGGAAC........................................................ len:20 al:1
....................UACAUGUGCUGCACcGGAACUCUUUAGC................................................ len:28 al:1
....................UACAUGUGCUGCACUGaAACUCU..................................................... len:23 al:2
....................UACAUGUGCUGCACUGGAACU....................................................... len:21 al:2488
....................UACAUGUGCUGuACUGGAACU....................................................... len:21 al:2
....................UACAUGUGCUGCACUGcA.......................................................... len:18 al:3
....................UACAUGUGuUGCACUGGAACUCUU.................................................... len:24 al:2
....................UACAUGUGCcGCACUGGAAC........................................................ len:20 al:3
....................UcCAUGUGCUGCACUGGA.......................................................... len:18 al:2
....................UACcUGUGCUGCACUGGA.......................................................... len:18 al:1
....................UACcUGUGCUGCACUGGAAC........................................................ len:20 al:1
....................UACAcGUGCUGCACUGGAACUCUU.................................................... len:24 al:6
....................UACgUGUGCUGCACUGGAACUC...................................................... len:22 al:1
....................UACAUGUGCaGCACUGGAACU....................................................... len:21 al:5
....................aACAUGUGCUGCACUGGAACU....................................................... len:21 al:1
....................UACAUGUGCUGCACc............................................................. len:15 al:3
....................UACAUaUGCUGCACUGGAACU....................................................... len:21 al:3
....................UACAUGUGCUGCACUuGAACUCU..................................................... len:23 al:1
....................UACAUGUGCUGCACgGGAACUCU..................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAACUuU..................................................... len:23 al:14
....................UACAUGUGCcGCACUGGAACUCUU.................................................... len:24 al:4
....................UACAUGUGCUGgACUGGAACUCU..................................................... len:23 al:1
....................UACAUGUGCUuCACUGGAACUC...................................................... len:22 al:2
....................UACAUGUGCUGCACUGGAACUaU..................................................... len:23 al:8
....................UACAUGUGCUGCACUGGAACgCU..................................................... len:23 al:1
....................UACAUGUGCUGCACcGGAACUCU..................................................... len:23 al:11
....................UACAUGUGCUGCACUGGc.......................................................... len:18 al:1
....................UACAUGUGCUGCACUGGgACU....................................................... len:21 al:12
....................UACAUGUaCUGCACUGGAACU....................................................... len:21 al:3
....................UACcUGUGCUGCACUGGAACUC...................................................... len:22 al:2
....................UACAUGUGCcGCACUGGA.......................................................... len:18 al:3
....................UACAUGUGCUGCAuUGGAACUC...................................................... len:22 al:1
....................UACAUGUGCUGCgCUGGAACU....................................................... len:21 al:7
....................UACAUGUGCUGCACUGaA.......................................................... len:18 al:1
....................UACAUGUaCUGCACUGGAAC........................................................ len:20 al:1
....................UACAUGUGCUGCcCUGGAACUCUU.................................................... len:24 al:1
....................UACAUGUGCUGCACUaGAACUC...................................................... len:22 al:1
....................UACAUGUGCUGuACUGGAAC........................................................ len:20 al:2
....................UACAUGUGCUGCACUGGAgCUCU..................................................... len:23 al:20
....................UgCAUGUGCUGCACUGGAACU....................................................... len:21 al:7
....................UACAUGUGCUGCACUGGAAaU....................................................... len:21 al:1
....................cACAUGUGCUGCACUGGAACUC...................................................... len:22 al:2
....................UACAUGcGCUGCACUGGAACUCUUU................................................... len:25 al:1
....................cACAUGUGCUGCACUGGAACUCU..................................................... len:23 al:21
....................UACAUGUGCUGCACUGGuA......................................................... len:19 al:1
....................UACAUGUGCUGCACcGGAACUCUU.................................................... len:24 al:1
....................UgCAUGUGCUGCACUGGAACUCU..................................................... len:23 al:10
....................UACAUGUGCUGCACUGGAACgC...................................................... len:22 al:2
....................UACAUGUGCUGCACUGGAACUCUUc................................................... len:25 al:23
....................UACAUaUGCUGCACUGGAACUCU..................................................... len:23 al:7
....................UACAUGUGCUGCACUGGAACUCUUaA.................................................. len:26 al:4
....................UACAUGUGCUGCACUuGAACUC...................................................... len:22 al:1
....................UACAUGUGCUGCACUGGAACUCUUUu.................................................. len:26 al:78
....................UACAUGUGCUGCACUGGuACUCU..................................................... len:23 al:1
....................UACAUGUGCUGCAaUGGAACUCU..................................................... len:23 al:4
....................UACAUGUGCUGCAuUGGAACUCU..................................................... len:23 al:10
....................UACAUGUGCUGCACUGGAuC........................................................ len:20 al:1
....................UACAUuUGCUGCACUGGAACUCU..................................................... len:23 al:2
....................UACAUGUGCUGCACUGGAACUCUaUA.................................................. len:26 al:36
....................UACAUGUGCUGCACUGa........................................................... len:17 al:2
....................UACAUGUGCUGCACUGGAACc....................................................... len:21 al:278
....................UACAUGUGCUGCACUGGAACUaUU.................................................... len:24 al:1
....................UACAUGgGCUGCACUGGAACUCU..................................................... len:23 al:3
....................UACAUGUGCUGCACUGGAAC........................................................ len:20 al:494
....................UACAUGUGCUGCACUGGg.......................................................... len:18 al:6
....................UACAUGUGCUGCACUGGAACUCc..................................................... len:23 al:898
....................UACAUGUGCUGCACUGGAACUCUaU................................................... len:25 al:182
....................UACAUGUGCUGCACUGGAACUCUUa................................................... len:25 al:47
....................UACAUGUGCUGCACUGGAACUCUU.................................................... len:24 al:875
....................UACAUGUuCUGCACUGGAACUCU..................................................... len:23 al:1
....................UACAUGUGCUGCcCUGGAACUCU..................................................... len:23 al:3
....................UACAUGUGCUGCACUGGAACUCUUUAGCAA.............................................. len:30 al:2
....................UACAUGUGCUGCACUaGAACUCU..................................................... len:23 al:11
....................UACAUGUGCUGCACUGGgACUC...................................................... len:22 al:2
....................UAuAUGUGCUGCACUGGA.......................................................... len:18 al:1
....................UACAUGUGCUGCACUGGAgC........................................................ len:20 al:2
.....................ACAUGUGCUGCACUGGAACUC...................................................... len:21 al:4
.....................ACAUGUGCUGCACUGGAACUCa..................................................... len:22 al:2
.....................ACAUGUGCUGCACUGGAACcC...................................................... len:21 al:2
.....................ACAUGUGCUGCACUGGAACUCc..................................................... len:22 al:1
.....................ACAUGUGCUGCACUGGAACc....................................................... len:20 al:2
.....................ACAUGUGCUGCACUGGAACUCU..................................................... len:22 al:16
.....................ACAUGUGCUGCACUGGAACUCUU.................................................... len:23 al:1
.....................ACAUGUGCUGCACUGGAACUCg..................................................... len:22 al:2
.....................ACAUGUGCUGCACUGGAACU....................................................... len:20 al:12
.....................ACAUGUGCUGCACUGGAAC........................................................ len:19 al:5
......................CAUGUGCUGCACUGGAACUCg..................................................... len:21 al:1
......................CAUGUGCUGCACUGGAACUCU..................................................... len:21 al:5
......................CAUGUGCUGCACUGGAACU....................................................... len:19 al:5
......................CAUGUGCUGCACUGGAACUC...................................................... len:20 al:2
.......................AUGUGCUGCACUGGAACUC...................................................... len:19 al:2
.......................AUGUGCUGCACUGGAACc....................................................... len:18 al:2
.......................AUGUGCUGCACUGGAACUCU..................................................... len:20 al:15
.......................AUGUGCUGCACUGGAACUCa..................................................... len:20 al:1
.......................AUGUGCUGCACUGGAAC........................................................ len:17 al:1
.......................AUGUGCUGCACUGGAACUCg..................................................... len:20 al:1
.......................AUGUGCUGCACUGGAACUCUU.................................................... len:21 al:1
.......................AUGUGCUGCACUGGAACUCc..................................................... len:20 al:2
.......................AUGUGCUGCACUGGAACU....................................................... len:18 al:8
........................UGUGCUGCACUGGAACUCUaU................................................... len:21 al:1
........................UGUGCUGCACUGGAACUCc..................................................... len:19 al:14
........................UGUGCUGCACUGGAACUCUUa................................................... len:21 al:4
........................UGUGCUGCACUGGAACUCg..................................................... len:19 al:1
........................UGUGuUGCACUGGAACUCU..................................................... len:19 al:2
........................UGUGCUGCACUGGAACUa...................................................... len:18 al:1
........................UGUGCUGCACUGGAACUCUU.................................................... len:20 al:12
........................UGUGCUGCACUGGAACUCU..................................................... len:19 al:134
........................UGUGCUGCACUGGAACUCUa.................................................... len:20 al:5
........................UaUGCUGCACUGGAACUCU..................................................... len:19 al:1
........................UGUGCUGCgCUGGAACUC...................................................... len:18 al:1
........................UGUGCUGCACUGGAACUCUc.................................................... len:20 al:1
........................UGUGCUGCACUGGAACUC...................................................... len:18 al:19
........................UGUGCUGCACUGGAACUCa..................................................... len:19 al:60
........................UGUGCUGCACUGGAACUCaUU................................................... len:21 al:1
........................UGUGCUGCACUGGAACUCaU.................................................... len:20 al:12
.................................CUGGAACUCUUUAGCAAGACAUUCa...................................... len:25 al:1
.................................CUGGAACUCUUUAGCAAGACA.......................................... len:21 al:2
..................................UGGAACUCUUUAGCAAGACAUUa....................................... len:23 al:1
..................................UGGAACUCUUUAGCAAGACA.......................................... len:20 al:3
.........................................CUUUAGCAAGACAUUCCAUGGCAGCa............................. len:26 al:2
.........................................CUUUAGCAAGACAUUCCAUGGCAGCUGUGUG........................ len:31 al:1
.........................................CUUUAGCAAGACAUUCCAUGGCAGCUGUGU......................... len:30 al:6
.........................................CUUUAGCAAGACAUUCCAUGGCAGCUGU........................... len:28 al:7
..........................................UUUAGCAAGACAUUCCAUGGCAGCUGUGU......................... len:29 al:1
..........................................UUUAGCAAGACAUUCCAUGGCAGCUGU........................... len:27 al:2
...........................................UUAGCAAGACAUUCCAUGGuAGCUGUGUGCG...................... len:31 al:2
...........................................UUAGCAAGgCAUUCCAUGGCAGCUGUGUGCG...................... len:31 al:4
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUGCG...................... len:31 al:1102
...........................................UUAGCAcGACAUUCCAUGGCAGCUGUGUGCG...................... len:31 al:1
...........................................UUuGCAAGACAUUCCAUGGCAGCUGUGU......................... len:28 al:2
...........................................UUAGCAAGACAUUCCAUGGCAGCUGaGUGCG...................... len:31 al:1
...........................................UUAGCAAGACgUUCCAUGGCAGCUGUGUG........................ len:29 al:1
...........................................UUAGCuAGACAUUCCAUGGCAGCUGUGUGCG...................... len:31 al:1
...........................................UUAGCAAGcCAUUCCAUGGCAGCUGUGUGCG...................... len:31 al:2
...........................................UUAGuAAGACAUUCCAUGGCAGCUGUGUGCG...................... len:31 al:5
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUGu....................... len:30 al:5
...........................................UUAGCAAGACAUUCCAUGGCgGCUGUGUGCG...................... len:31 al:5
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGcGCG...................... len:31 al:6
...........................................UUAGCAAGACAUUCCgUGGCAGCUGUGUGCG...................... len:31 al:3
...........................................UUAGCAAGACgUUCCAUGGCAGCUGUGUGCG...................... len:31 al:2
...........................................UUAGCAAGACAcUCCAUGGCAGCUGUGUGCG...................... len:31 al:1
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUGC....................... len:30 al:18
...........................................UUAGCAgGACAUUCCAUGGCAGCUGUGUGCG...................... len:31 al:1
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUGCu...................... len:31 al:113
...........................................UUAGCAAGACAUUCCAUaGCAGCUGUGUGCG...................... len:31 al:1
...........................................UUAGCgAGACAUUCCAUGGCAGCUGUGUGCG...................... len:31 al:4
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUGgG...................... len:31 al:2
...........................................UUAGCAAGACAUUCCAUGaCAGCUGUGUGCG...................... len:31 al:1
...........................................UUgGCAAGACAUUCCAUGGCAGCUGUGUGCG...................... len:31 al:2
...........................................UUAGCcAGACAUUCCAUGGCAGCUGUGUGCG...................... len:31 al:2
...........................................UUAGCAAGACAUUCCAUGGCAGuUGUGUGCG...................... len:31 al:2
...........................................UUAGCAAGACAUUCCAUGGCAGCaGUGUGCG...................... len:31 al:4
...........................................UUAGCAAGACAUUCCAUGGCAGCU............................. len:24 al:1
...........................................cUAGCAAGACAUUCCAUGGCAGCUGUGUGCG...................... len:31 al:3
...........................................UUAGCAAGACAUUCCAcGGCAGCUGUGUGCG...................... len:31 al:3
...........................................UUAGCAAGACAUUCCAUuGCAGCUGUGUGCG...................... len:31 al:1
...........................................UUAGCAAGACAUUCCAUGGCAGCUGcGUGCG...................... len:31 al:4
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUaCG...................... len:31 al:2
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGU......................... len:28 al:5
...........................................UUAGCAAGACAUUCCAUGuCAGCUGUGUGCG...................... len:31 al:1
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUG........................ len:29 al:3
...........................................UUAGCAAGACcUUCCAUGGCAGCUGUGUGCG...................... len:31 al:1
...........................................UUAGCAAGACAUUCCAUGGCAGCgGUGUGCG...................... len:31 al:2
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUa........................ len:29 al:1
...........................................UUuGCAAGACAUUCCAUGGCAGCUGUGUGC....................... len:30 al:8
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUGCa...................... len:31 al:244
...........................................UUuGCAAGACAUUCCAUGGCAGCUGUGUGCG...................... len:31 al:34
...........................................UUAGCAAGACAcUCCAUGGCAGCUGUGUGC....................... len:30 al:2
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGc......................... len:28 al:1
...........................................UUAGCAAGACAaUCCAUGGCAGCUGUGUGCG...................... len:31 al:2
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUGCc...................... len:31 al:20
...........................................UUAGCAAGACAUUCCAUGGCAGCcGUGUGCG...................... len:31 al:1
...........................................UcAGCAAGACAUUCCAUGGCAGCUGUGUGCG...................... len:31 al:4
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUGuG...................... len:31 al:4
...........................................UUAGCAAGACAUUCCAUGGCAGCUGU........................... len:26 al:5
...........................................UUAaCAAGACAUUCCAUGGCAGCUGUGUGCG...................... len:31 al:1
...........................................UUAGCAAGACAcUCCAUGGCAGCUGUGUG........................ len:29 al:1
...........................................UUAGCAAGACAUUCCAUGGCAGCUGc........................... len:26 al:1
...........................................UUAGCAAGACAUcCCAUGGCAGCUGUGUGCG...................... len:31 al:1
............................................UAGCAAGACAUUCCAUGGCAGCUGUGUGCG...................... len:30 al:4
.............................................AGCAAGACAUUCCAUGGCAGCUGUGUGCu...................... len:29 al:1
.............................................AGCAAGACAUUCCAUGGCAGCUGUGUGCG...................... len:29 al:21
.............................................AGCAAGACAUUCCgUGGCAGCUGUGU......................... len:26 al:1
.............................................AGCAAGACAUUCCAUGGCAGCUGUGUGu....................... len:28 al:1
.............................................AGCAAGACAUUCCAUGGCAGCUGUGUGCa...................... len:29 al:1
.............................................AGCAAGACAUUCCAUGGCAGCUGUGU......................... len:26 al:1
...............................................CAAGACAUUCCAUGGCAGCUGc........................... len:22 al:1
...............................................CAAGACAUUCCAUGGCAGCUGUGUGCG...................... len:27 al:2
................................................AAGACAUUCCAUGGCAGCUGUGUGCa...................... len:26 al:1
................................................AAGACAUUCCAUGGCAGCUGUGc......................... len:23 al:1
................................................AAGACAUUCCAUGGCAGCUGUGUGCG...................... len:26 al:1
.................................................AGACAUUCCAUGGCAGCUGUGUGCG...................... len:25 al:1
.................................................AGACAUUCCAUGGCAGCUGUGUGC....................... len:24 al:2
.................................................AGACAUUCCAUGGCAGCUGUGUGCa...................... len:25 al:1
..................................................GACAUUCCAUGGCAGCUGUGUGCG...................... len:24 al:1
..................................................GACAUUCCAUGGCAGCUGUGU......................... len:21 al:1
..................................................GACAUUCCAUGGCAGCUGUGUGCc...................... len:24 al:1
...................................................ACAgUCCAUGGCAGCUGUGUGCGC..................... len:24 al:2
...................................................ACAUUCCAUGGCAGCUuUGUGC....................... len:22 al:2
...................................................ACAUUCCAUGGCAGCUGUGUu........................ len:21 al:1
...................................................ACAUUCCAUGGCAGCUGUa.......................... len:19 al:2
...................................................ACAUUCCAUGGCAGCUGUGUGgG...................... len:23 al:1
...................................................ACAUUCCAUGGCAGCUGUGcGCG...................... len:23 al:1
...................................................ACAUcCCAUGGCAGCUGUGUGCG...................... len:23 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCGC..................... len:24 al:9
...................................................ACAUUCCAUGGCAGCUGUGUGCGuUA................... len:26 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCG...................... len:23 al:372
...................................................ACAUUCCAUGGCAGCUGUGc......................... len:20 al:1
...................................................ACAUUCCAUGGCAGCcGUGUGCG...................... len:23 al:1
...................................................ACAUUCCAUGGCAGCUGc........................... len:18 al:2
...................................................ACAUUCCAUGGCAGCUGUGU......................... len:20 al:3
...................................................ACAUUCCAUGGCAGCUGUGUGCc...................... len:23 al:7
...................................................ACAUUCCAUGGCAGCcGU........................... len:18 al:1
...................................................ACAUUCCAUGGCAGCaGUGUGCG...................... len:23 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCGg..................... len:24 al:2
...................................................ACAUUCCAUGGCAGCUGUGcGC....................... len:22 al:1
...................................................ACAUUuCAUGGCAGCUGUGUGCG...................... len:23 al:1
...................................................ACAUUCCAUGGCAGCUGUGUaCG...................... len:23 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCa...................... len:23 al:79
...................................................ACAUUCCAUGGCgGCUGUGUGCG...................... len:23 al:3
...................................................ACAUUCCAUGGCAGCUGUG.......................... len:19 al:2
...................................................ACAUUCCAUGGCAGCUGUGUa........................ len:21 al:2
...................................................ACAUUCuAUGGCAGCUGUGUGCG...................... len:23 al:1
...................................................ACAUUCCAUGGCAGCUGU........................... len:18 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCGa..................... len:24 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCu...................... len:23 al:61
...................................................ACAUUCCAUGGCAGCUGUGUGCGCUu................... len:26 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGu....................... len:22 al:14
...................................................ACAUUCCAUGGCAGCUGUGUGaG...................... len:23 al:1
...................................................ACAcUCCAUGGCAGCUGUGUGCG...................... len:23 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCGuU.................... len:25 al:21
...................................................ACAUUCCAUGGCAGCUGUGUGCGu..................... len:24 al:71
...................................................ACAUUCCAUGGCAGCUGUGUGC....................... len:22 al:46
...................................................ACAUUCCAUGGCAGCUGUGUG........................ len:21 al:5
...................................................ACAUUCCAUGGCAGCUaUGUGCG...................... len:23 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGa....................... len:22 al:9
....................................................CAUUCCAUGGCAGCUGUGc......................... len:19 al:1
....................................................CAUUCCAUGGCAaCUGUGUGCG...................... len:22 al:1
....................................................CAUUCCAUGGCAGCUGUGUGg....................... len:21 al:1
....................................................CAUUCCAUGGCAGCUGUGUaCG...................... len:22 al:3
....................................................CAUUCCAUGGCAGCUGUGUGCc...................... len:22 al:17
....................................................CAUUCCAUGGCAGCUGUGUG........................ len:20 al:18
....................................................CAUUCCAUGGCAGCUGUGUGCGa..................... len:23 al:2
....................................................CAUUCCuUGGCAGCUGUGUGCG...................... len:22 al:1
....................................................CAcUCCAUGGCAGCUGUGU......................... len:19 al:1
....................................................CAUUCCAUGGCAGCUGUGUa........................ len:20 al:1
....................................................CAUUCCgUGGCAGCUGUGUGCG...................... len:22 al:2
....................................................CAUUCCAUGGCAGCUuUGUGCG...................... len:22 al:1
....................................................CAUUCCAUGGCAGCUGUGUcC....................... len:21 al:1
....................................................CAUUCCAUGGCAGCUGUGUGCa...................... len:22 al:237
....................................................CAUUCCAUGGCAGCUGUGUGu....................... len:21 al:21
....................................................CAUUCCAUGGCAGCUGUGUGgG...................... len:22 al:1
....................................................CAUUCuAUGGCAGCUGUGUGCG...................... len:22 al:1
....................................................CAcUCCAUGGCAGCUGUGUG........................ len:20 al:1
....................................................CAUUCCAUGGCAGCUGUGU......................... len:19 al:5
....................................................CAUUCCAUGGCAGCUGcGUGCG...................... len:22 al:3
....................................................CAUUCCcUGGCAGCUGUGUGCG...................... len:22 al:1
....................................................CAUUCCAUGGCAGCUGUGUGa....................... len:21 al:6
....................................................CAUUCCAUGGCAGCUGUGUGuG...................... len:22 al:3
....................................................CAUUCCAUGGCAGgUGUGUGCG...................... len:22 al:1
....................................................CAcUCCAUGGCAGCUGUGUGC....................... len:21 al:1
....................................................CAUUCCAUGGCAGCUGUGcGCG...................... len:22 al:3
....................................................CAUUCCAUGGCgGCUGUGUGC....................... len:21 al:1
....................................................CAUUCCAUGGCAGCUGUGUGCGuU.................... len:24 al:8
....................................................CAUUCCAUGGCAGCUGUGUGCGC..................... len:23 al:3
....................................................CAUUCCAUGGCgGCUGUGUGCG...................... len:22 al:4
....................................................CAUUCCAUGGCAGCUGUa.......................... len:18 al:2
....................................................CgUUCCAUGGCAGCUGUGUGCG...................... len:22 al:3
....................................................CAUUCCAUGGCAGCUGUG.......................... len:18 al:7
....................................................CAUUCCgUGGCAGCUGUGUGC....................... len:21 al:1
....................................................CAUUCCAUGGCAGCUGUGUGC....................... len:21 al:121
....................................................CAUcCCAUGGCAGCUGUGUGCG...................... len:22 al:3
....................................................CAUUCCAUaGCAGCUGUGUGCG...................... len:22 al:5
....................................................CAUUCCAUGGCAGCcGUGUGCG...................... len:22 al:2
....................................................CAcUCCAUGGCAGCUGUGUGCG...................... len:22 al:6
....................................................CAUUCCAUGGCAGCUGUGUGCGu..................... len:23 al:47
....................................................CAUUCCAUGGCAGCUGUGUGCG...................... len:22 al:790
....................................................CAUUCCAUGGCAGCUGUGUGCu...................... len:22 al:93
....................................................gAUUCCAUGGCAGCUGUGUGC....................... len:21 al:1
.....................................................AUUCCAUGGCAGCUGUGUaCG...................... len:21 al:1
.....................................................AUUCCAUGGCAGCUGUGUa........................ len:19 al:5
.....................................................AUUCCAUGGCAGCcGUGUGC....................... len:20 al:2
.....................................................AUUCCAUGGCAGCUGUaUGCG...................... len:21 al:3
.....................................................AUUCCAUGGCAGCUGUGUGCc...................... len:21 al:22
.....................................................AUUCCAUGGCAGCUGUGcGCG...................... len:21 al:2
.....................................................AcUCCAUGGCAGCUGUGUGCG...................... len:21 al:7
.....................................................AUUCCAcGGCAGCUGUGUGCG...................... len:21 al:6
.....................................................AUUCCAUGGCAGCUGUGUGCGC..................... len:22 al:11
.....................................................AUUCCAUGGCAGCUGcGUGCG...................... len:21 al:1
.....................................................AUUCCAUGGCgGCUGUGUGCG...................... len:21 al:2
.....................................................AUUCCgUGGCAGCUGUGUGCG...................... len:21 al:2
.....................................................AUUCCAUGGCAGCUaUGUGCG...................... len:21 al:1
.....................................................AUcCCAUGGCAGCUGUGUGCG...................... len:21 al:1
.....................................................AUUCCAUGGCAGCUGUGUaC....................... len:20 al:1
.....................................................AUUCCAUGGCAGCUGUGUGCGu..................... len:22 al:126
.....................................................AUUCCAUGGCAGCUGUGUGCGg..................... len:22 al:2
.....................................................gUUCCAUGGCAGCUGUGU......................... len:18 al:2
.....................................................AUUCCAUGGCAGCUGUGUGC....................... len:20 al:282
.....................................................AUUCCAUGGCAGCUGUGc......................... len:18 al:4
.....................................................AUUCCAUGGCAGCUGUGUu........................ len:19 al:3
.....................................................AUUCCAUGGCAGCUGUGa......................... len:18 al:2
.....................................................AUUCCAUGGCAGCUGUGUGCGuU.................... len:23 al:24
.....................................................AUUCCAUGGCAGCUGUGUGCa...................... len:21 al:299
.....................................................AUUCCAUGGCAGCUGUGaGCG...................... len:21 al:1
.....................................................AUUCCAUGGCAGCcGUGU......................... len:18 al:1
.....................................................gUUCCAUGGCAGCUGUGUGCG...................... len:21 al:2
.....................................................AUUCCAUGGCAGCUGUGUGg....................... len:20 al:2
.....................................................AUUCCAUGGCAGCUGUG.......................... len:17 al:2
.....................................................AUUCCAUGGCAGCUGUGUGCu...................... len:21 al:105
.....................................................AUUCCAUGGCAGCUGUGU......................... len:18 al:20
.....................................................AUUCCAUGGCAGCUGcGUGC....................... len:20 al:2
.....................................................AUUCCAUGGCcGCUGUGUGCG...................... len:21 al:1
.....................................................AUUCCAUGGCAGCUGUGUGa....................... len:20 al:11
.....................................................AUUCCAUGGCAGCUGUGUGgG...................... len:21 al:2
.....................................................AUcCCAUGGCAGCUGUGUGC....................... len:20 al:1
.....................................................AUUCCgUGGCAGCUGUGUGC....................... len:20 al:2
.....................................................AUUCCAUGGCAGCaGUGUGCG...................... len:21 al:2
.....................................................AUUCCAUGGCAGCUGUGUG........................ len:19 al:37
.....................................................AUUCCAUGGCAGCUGUGcGC....................... len:20 al:2
.....................................................AUUCCAUGGCAGCUGUGUGuG...................... len:21 al:1
.....................................................AUUCCAUGGCAGCUGUGUc........................ len:19 al:8
.....................................................AUUCCAUGGCAGCUGUGUGCG...................... len:21 al:1039
.....................................................AUUCCAUGuCAGCUGUGUGCG...................... len:21 al:1
.....................................................AUUCCAUGGCAGCUGUGUGCGuUA................... len:24 al:1
.....................................................AUUCCAUGGCAGCcGUGUGCG...................... len:21 al:6
.....................................................gUUCCAUGGCAGCUGUGUGC....................... len:20 al:1
.....................................................AUUCCAUGGCAGCUGaGUGCG...................... len:21 al:1
.....................................................AUUCCAUGGCAGCUGUGUGCGa..................... len:22 al:4
.....................................................AUUuCAUGGCAGCUGUGUGCG...................... len:21 al:2
.....................................................AcUCCAUGGCAGCUGUGUGC....................... len:20 al:1
.....................................................AUUCCAUGGCuGCUGUGUGCG...................... len:21 al:1
.....................................................AUUCCAUGGCAGCUGUGUGu....................... len:20 al:65
.....................................................gUUCCAUGGCAGCUGUGUG........................ len:19 al:1
.....................................................AUUCuAUGGCAGCUGUGUGCG...................... len:21 al:1
......................................................UUCCAUGGCAGCUGUGUGCGCc.................... len:22 al:2
......................................................UUCCAUGGCAGCUGUGUGC....................... len:19 al:6
......................................................UUCCAUGGCAGCUGUGUGCGu..................... len:21 al:3
......................................................UUCCAUGGCAGCUGcGUGCG...................... len:20 al:2
......................................................UUCCAUGGCAGCUGUGUGCG...................... len:20 al:30
......................................................UUCCAUGGCAGCcGUGUGCG...................... len:20 al:1
......................................................UUCCAUGGCAGCUGUGUu........................ len:18 al:1
......................................................UUCCAUGuCAGCUGUGUGC....................... len:19 al:1
......................................................UUCCAUGGCAGCUGUGUG........................ len:18 al:4
......................................................UUCCAUGGCAGCUGUGUGCc...................... len:20 al:1
......................................................UUCCAUGGCAGCUGUGUGCa...................... len:20 al:4
......................................................UUCCAUGGCAGCUGUGUGCu...................... len:20 al:2
......................................................UUCCAUGGCAGCUGUGUGu....................... len:19 al:2
.......................................................UCCAUGGCAGCUGUGUaCG...................... len:19 al:1
.......................................................UCCAUGGCAGCUGUGUGCc...................... len:19 al:1
.......................................................UCCAUGGCAGCUGUGUGCu...................... len:19 al:1
.......................................................UCCAUGGCAGCUGUGUGCGu..................... len:20 al:2
.......................................................UCCAUGGCAGCUGUGUGC....................... len:18 al:1
.......................................................UCCAUGGCAGCUGUGUGCG...................... len:19 al:2
........................................................CCAUGGCAGCUGUGUGCG...................... len:18 al:1
..........................................................AUGGaAGCUGUGUGCGCU.................... len:18 al:1
..........................................................................CUAGGGCUUCACCUUUUUC... len:19 al:1
..........................................................................CUAGGGCUUCACCUUUUUCA.. len:20 al:1
..........................................................................CUAGGGCUUCACCUUUUUCAG. len:21 al:3
..........................................................................CUAGGGCUUCACCUUUUUCAGu len:22 al:1
..........................................................................CUAGGGCUUCACCUUcUUCAGG len:22 al:1
...........................................................................UgGGGCUUCACCUUUUUCAGG len:21 al:2