Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000025l:15156415-15156507 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_14101.ps.pdf
Locus Name: Cluster_14101
CACUGCUUUCAAUAGUUUGGAUUUACCACAUUCAGGAUAGACAUGUUCUAUAUCUAGCCUGAAUGAGGUAAUAUUUAAGCUGUUAAAUUGCAU
...(((....(((((((((((((((((.((((((((.((((.(((...))).)))).)))))))).))))).)))))))))))).....))). (-32.80)
.ACUGCUUUCAAUAGUUUGGAU....................................................................... len:21 al:1
...UGCUUUCAAUAGUUUGGAU....................................................................... len:19 al:1
.............AGUUUGGAUUUACCACAUUCAGGAUAGACA.................................................. len:30 al:1
.....................cUUACCACAUUCAGGAUAGACAU................................................. len:23 al:1
.....................aUUACCACAUUCAGGAUA...................................................... len:18 al:1
......................UUACCACAUUCAGGAUgGACAUG................................................ len:23 al:2
......................UUACCACgUUCAGGAUAGACAU................................................. len:22 al:6
......................UUACCgCAUUCAGGAUAGACA.................................................. len:21 al:3
......................UUACCACAUUCAGGAUAGgCA.................................................. len:21 al:1
......................UUgCCACAUUCAGGAUAGACAU................................................. len:22 al:5
......................UUACCACAUUCcGGAUAGACAU................................................. len:22 al:4
......................UUACCACAUUCAGGAUAGACAUGUUCUAUu......................................... len:30 al:2
......................UUACCACAUUCAGGAc....................................................... len:16 al:1
......................UUACCACAUUuAGGAUAGACAU................................................. len:22 al:2
......................UUACCACAUUCgGGAUAGACAU................................................. len:22 al:8
......................UUACCACAUcCAGGAUAGACA.................................................. len:21 al:1
......................UUACCACAUUCAGGAUAGACc.................................................. len:21 al:3
......................UUACCACAUUCAGGAUAGACu.................................................. len:21 al:13
......................UUACuACAUUCAGGAUAGACAU................................................. len:22 al:1
......................UUACCuCAUUCAGGAUAGACA.................................................. len:21 al:2
......................UUACCACAUUCAGGAUAaACAU................................................. len:22 al:1
......................UUACCACAUUCAGGAUAGACAUGUUCUuU.......................................... len:29 al:1
......................UUACCACAUcCAGGAUAG..................................................... len:18 al:1
......................UUACCACAUUCAGGAUAGACAUGg............................................... len:24 al:1
......................UUACCACAUUCAGGAUAGgCAU................................................. len:22 al:7
......................UUACCACAUUCgGGAUAGACA.................................................. len:21 al:3
......................UUACCACcUUCAGGAUAGACAU................................................. len:22 al:2
......................UUACCACAUUCAGGAUAGACAUc................................................ len:23 al:13
......................UUACCACAUUCAGGAUAGACAUGc............................................... len:24 al:3
......................UcACCACAUUCAGGAUAGAC................................................... len:20 al:1
......................UUACCACAUUCAGGAUAGACAUGUUu............................................. len:26 al:2
......................UUACCACAUUCAGGAUAuACA.................................................. len:21 al:2
......................UUACCACgUUCAGGAUAGACA.................................................. len:21 al:1
......................UUACCACAUUCAGGAUAGACAg................................................. len:22 al:5
......................UUACCACAUUCAGGAcAGACAU................................................. len:22 al:1
......................UUACCACAUUCAGGAUAGACAUGUUCUAUA......................................... len:30 al:1
......................UUACCACAUUCAGGAUAGgC................................................... len:20 al:2
......................UUACCACAUUCAGGAUAGACuU................................................. len:22 al:1
......................UUACCACAUUCAGGAUAGACAUG................................................ len:23 al:51
......................UUACCACAUUCAGGAUAGACAUGUa.............................................. len:25 al:1
......................UUACCACAUUCAGGAUAGA.................................................... len:19 al:57
......................UUACCACAUUCAGGAUAGACAU................................................. len:22 al:1460
......................UUACCACAUUCAGGAUAGACAUGUUCUAUuU........................................ len:31 al:1
......................UUACCACAUcCAGGAUAGACAU................................................. len:22 al:3
......................UUACCACAUUCAGGgUAGACAU................................................. len:22 al:3
......................UcACCACAUUCAGGAUAGACAU................................................. len:22 al:2
......................UUACCACAUUCgGGAUAGAC................................................... len:20 al:1
......................UUACCgCAUUCAGGAUAGACAU................................................. len:22 al:2
......................UUACCACAcUCAGGAUAGACA.................................................. len:21 al:2
......................UUACCACAUUCAGGAUgGACAU................................................. len:22 al:4
......................UUACCACAUUCAGGAUAGuCAU................................................. len:22 al:1
......................UUACCACAUUCAGGAUAGACA.................................................. len:21 al:1102
......................UUACCACAUUCAGGAUAGACAUuU............................................... len:24 al:7
......................UUACCuCAUUCAGGAUAGACAU................................................. len:22 al:1
......................UUACCACAUUCAGGAUAGAa................................................... len:20 al:1
......................UUcCCACAUUCAGGAUAGACA.................................................. len:21 al:1
......................UUACCACAUUCAGGAUAGACAUGUU.............................................. len:25 al:2
......................UUACCACAaUCAGGAUAGAC................................................... len:20 al:1
......................UUACCACAUUCAGGAUAGACAUGUUC............................................. len:26 al:34
......................UUACCACAUUCAGGAUAGACAUaU............................................... len:24 al:4
......................UUACCACAUUCAGGAU....................................................... len:16 al:2
......................UUACCACAUUCAGGAUAGACAUGUUCa............................................ len:27 al:13
......................UUgCCACAUUCAGGAUAGACA.................................................. len:21 al:1
......................UUACCACAUUCAGGAUAGACAUGUUCUA........................................... len:28 al:1
......................cUACCACAUUCAGGAUAGACA.................................................. len:21 al:1
......................UUACCACAUUCAGGAUAGACcUG................................................ len:23 al:1
......................UUACCACAUUCAGGAUAGACAUGUUCU............................................ len:27 al:5
......................UUACCACAUUCAGGAUA...................................................... len:17 al:2
......................UUACCcCAUUCAGGAUAGACAU................................................. len:22 al:1
......................UUACCACAUUCAGGAUAGACg.................................................. len:21 al:9
......................cUACCACAUUCAGGAUAGACAU................................................. len:22 al:10
......................UUcCCACAUUCAGGAUAGACAU................................................. len:22 al:2
......................UUACCACAUUCAGGAUAGcCAU................................................. len:22 al:2
......................UUACCACAUUCAGGgUAGACA.................................................. len:21 al:4
......................UUACCACAUUCAGGAUAGACAUu................................................ len:23 al:106
......................UUACCACAUUCAGGuUAGACA.................................................. len:21 al:1
......................UUACCACAUUCAGGAUAGACgU................................................. len:22 al:7
......................UUACCACAUUCAGGAUAGAC................................................... len:20 al:422
......................UUACCACAUUCAGGAUAGACAUGUUCaA........................................... len:28 al:2
......................UUACCACAUUCAGGAUAGAu................................................... len:20 al:8
......................UUACCACAUUCAGGAUAGACAUGU............................................... len:24 al:12
......................UUACCACAUUCAaGAUAGACAU................................................. len:22 al:1
......................UUACCACAUUCAGGAUAGACAUa................................................ len:23 al:80
......................UUACuACAUUCAGGAUAGAC................................................... len:20 al:1
.......................UACCACAUUCAGGAUAGACAU................................................. len:21 al:12
.......................UACCACAUUCAGGAUAGACAUu................................................ len:22 al:5
.......................UACCACAUUCAGGAUAGACAUGUUCa............................................ len:26 al:4
.......................UACCACAUUCAGGAUAGACAUGUUCUAUA......................................... len:29 al:2
.......................UACCACAUUCAGGAUgGACAUGUUCU............................................ len:26 al:1
.......................UACCACAUUCAGGAUAGACA.................................................. len:20 al:1
.......................UACCACAUUCAGGAUAGACAUG................................................ len:22 al:6
.......................UACCACAUUCAGGAUAGACAUGUUC............................................. len:25 al:9
.......................UACCACAUUCAGGAUAGAC................................................... len:19 al:1
..........................CACAUUCAGGAUAGACAU................................................. len:18 al:2
..........................CACAUUCAGGAUAGACAUa................................................ len:19 al:1
...........................ACAUUCAGGAUAGACAUG................................................ len:18 al:1
.............................AUUCAGGAUAGACAUGUUC............................................. len:19 al:1
.......................................GACAUGUUCUAUAUCUAGCCUGu............................... len:23 al:1
.........................................CAUGUUCUAUAUCUAGCCUGAAUGAGGU........................ len:28 al:1
..........................................AUGUUCUAUAUCUAGCCUGAu.............................. len:21 al:1
..........................................AUGUUCUAUAUCUAGCCUGAAUGA........................... len:24 al:3
..........................................AUGUUCUAUAUCUAGCCUGu............................... len:20 al:2
..........................................AUGUUCUAUAUCUAGCCUG................................ len:19 al:1
..........................................AUGUUCUAUAUCUAGCCUGAAUGAGGU........................ len:27 al:12
..........................................AUGUUCUAUAUCUAGCCUGAAUGAGGUAAU..................... len:30 al:1
...........................................UGUUCUAUAUCUAGCCUGAAUGAGGUAAUA.................... len:30 al:2
...........................................UGUUCUAUAUCUAGCCUGAAUGAGGc........................ len:26 al:3
...........................................UGUUCUAUAUCUAGCCUGAAUGAGGUAAUAU................... len:31 al:5
...........................................UGUUCUAUAUCUAGCCUGAAUGuGGU........................ len:26 al:2
...........................................UGUUCUAUAUCUAGCCUGAAUGAGGU........................ len:26 al:5
...........................................UGUUCUAUAUCUAGCCUGAAUGA........................... len:23 al:1
............................................GUUCUAUAUCUAGCCUGAAUGA........................... len:22 al:1
...................................................AUCUAGCCUGAAUGAG.......................... len:16 al:1
...................................................AUCUAGCCUGAAUGAGGUAAUAU................... len:23 al:4
...................................................AUCUAGCCUGAAUGAGGc........................ len:18 al:3
...................................................AUCUAGCCUGAAUGAGGU........................ len:18 al:4
...................................................AUCUAGCCUGAAUGAGGUA....................... len:19 al:4
...................................................AUCUAGCCUGAAUGAGGUAA...................... len:20 al:1
...................................................AUCUAGCCUGAAUGA........................... len:15 al:2
...................................................AUCUAGCCUGAAUGAGGUAAU..................... len:21 al:5
...................................................AUCUAGCCUGAAUGAGGUAAUA.................... len:22 al:2