Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000025l:10668901-10668998 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_14022.ps.pdf
Locus Name: Cluster_14022
GUCUGAUACAUUUUACGAGAUGUUUUUUCGUAACAGCUUCAUAAAUUGAAUUAUAAAGCUUUUGUGAAGAAACACGUUGUGAAAUUUACUUCCAUCAG
..(((((..(((((((((..(((((((((((((.(((((.((((......)))).))))).)))))))))))))..)))))))))........))))) (-26.40)
GUCUGAUACAUUUUACGAGA.............................................................................. len:20 al:19
.UCUGAUACAUUUUACGAGA.............................................................................. len:19 al:1
..CUGAUACAUUUUACGAGA.............................................................................. len:18 al:1
....................UGUUUUUUCGUAACAGCUUCAUAAAU.................................................... len:26 al:1
....................UGUUUUUUCGUAACAGCUUCAUA....................................................... len:23 al:94
....................UGUUUUUUCGUAACAGCUUCAc........................................................ len:22 al:1
....................UGUUUUUUCGUAACAGCUUCA......................................................... len:21 al:2
....................UGUUUUUUCGUAACuGCUUCAU........................................................ len:22 al:1
....................UGUUUUUUCGUAACAGCUU........................................................... len:19 al:1
....................UGUUUUUUCGUAACAGCUUC.......................................................... len:20 al:1
....................UGUUUUUUCGUAACAGCUUCAUu....................................................... len:23 al:3
....................UGUUUUUUCGUAACAGCUcCAUA....................................................... len:23 al:1
....................UGUUUUUUCGUAACAGgUUCAUA....................................................... len:23 al:1
....................UGUUUUUUCGUAACAGCUUCAUAu...................................................... len:24 al:2
....................UGUUUUUUCGUAACgGCUUCAUA....................................................... len:23 al:2
....................UGUUUUUUCGUAACAGCUUCAU........................................................ len:22 al:11
....................UGUUUUUUCGUAACAGCUUCAUAAAUUGA................................................. len:29 al:2
....................UGUUUUUUCGUAACAGCcUCAUA....................................................... len:23 al:2
....................UGUUUUUUCGUAACAGCUUCAcA....................................................... len:23 al:2
.....................uUUUUUUCGUAACAGCUUCAUA....................................................... len:22 al:1
......................UUUUUUCGUAACAGCUUCAUA....................................................... len:21 al:1
......................UUUUUUCGUAACAGCUUC.......................................................... len:18 al:1
........................UUUUCGUAACAGCUUCAUAAAUUGAAU............................................... len:27 al:1
.....................................................UAAAGCUUUUGUGAAGgAACACG...................... len:23 al:3
.....................................................UAcAGCUUUUGUGAAGAAACACG...................... len:23 al:1
.....................................................UAAAGCUUUUGUGgAGAAAC......................... len:20 al:2
.....................................................UAAAGCcUUUGUGAAGAAACACGU..................... len:24 al:1
.....................................................UAAAGCUcUUGUGAAGAAACACG...................... len:23 al:2
.....................................................UAAAGCUUUUGUGAAGAgACACG...................... len:23 al:2
.....................................................gAAAGCUUUUGUGAAGAAACACG...................... len:23 al:1
.....................................................UAAAGCUUUUGUGAuGAAACACG...................... len:23 al:2
.....................................................UAAAGCUUUUGUGAAGAAACACGc..................... len:24 al:11
.....................................................UAgAGCUUUUGUGAAGA............................ len:17 al:1
.....................................................UAAAGCUUcUGUGAAGAAACACG...................... len:23 al:2
.....................................................UAAAGCcUUUGUGAAGAAAC......................... len:20 al:2
.....................................................UAAAGCUUUUGUGAcGAAACACG...................... len:23 al:1
.....................................................UAAAGCUUUUGUGAAGAAACAaG...................... len:23 al:2
.....................................................UAAAGCUUUUGUGAAGAAACACa...................... len:23 al:211
.....................................................UAAAGCUUUUGUGAAGAAACACGUU.................... len:25 al:2
.....................................................UAAAGCUUUUGUGAAGAAACACGaU.................... len:25 al:2
.....................................................UAAAGCUUUUGUGAAGcAAC......................... len:20 al:2
.....................................................UAAAGCUUUUGUGAAGAAAC......................... len:20 al:170
.....................................................UAAAGCUUUUGUGAA.............................. len:15 al:11
.....................................................UAAAGuUUUUGUGAAGAAACACG...................... len:23 al:1
.....................................................aAAAGCUUUUGUGAAGAAAC......................... len:20 al:1
.....................................................UAAAGCUUUUGUGgAGAAACACG...................... len:23 al:4
.....................................................cAAAGCUUUUGUGAAGAAACACG...................... len:23 al:2
.....................................................UAAAGuUUUUGUGAAGAAAC......................... len:20 al:1
.....................................................UAAAGCUUUUGUGAAGAAcCACG...................... len:23 al:1
.....................................................UAAAGCUUUUGUGAgGAAACACG...................... len:23 al:7
.....................................................UAAAGCUUUUGUGAAGAAACAC....................... len:22 al:15
.....................................................UAAAGCUUUUGUGAAGAAAu......................... len:20 al:3
.....................................................UAAgGCUUUUGUGAAGAAACACG...................... len:23 al:6
.....................................................UAAAGCUUUUGcGAAGAAACACG...................... len:23 al:6
.....................................................UAAAGCUUUUGUGAAGAAACACc...................... len:23 al:6
.....................................................UAAAGCUUUUGUGAAGAAA.......................... len:19 al:53
.....................................................UAAAGCUUUUaUGAAGAAACA........................ len:21 al:1
.....................................................UAAAGCUUUUGUGAAGAgACAC....................... len:22 al:1
.....................................................UAAAGCUUUUGUGAAGAAACAuG...................... len:23 al:1
.....................................................UAAAGCUUUUGUGAAGAAACACGU..................... len:24 al:55
.....................................................UAAAGCUUUUGUGAAGAAACgCG...................... len:23 al:5
.....................................................UAAAGCUUUUGUGAAGAAACACu...................... len:23 al:42
.....................................................UAAAGCUUUUGUGAAGAAcC......................... len:20 al:1
.....................................................UAAAGCUUUUGUGAAGAg........................... len:18 al:2
.....................................................UAAAGCUUUUGUGAAGA............................ len:17 al:2
.....................................................UAAAGCUUUUGUGAAGAAACACGg..................... len:24 al:2
.....................................................UAAAGCUUUUGUGAAGAAACACG...................... len:23 al:1367
.....................................................UAAAGCUcUUGUGAAGAAACAC....................... len:22 al:1
.....................................................UAAAGCUUUUGUGAAGAgA.......................... len:19 al:1
.....................................................UAAAGCUUUUGUGAAGAAACAg....................... len:22 al:1
.....................................................UgAAGCUUUUGUGAAGAAACACG...................... len:23 al:5
.....................................................UAAAGCUUUUGUGAAGAAgCACG...................... len:23 al:3
.....................................................UAAAGCUUUUGUGAAaAA........................... len:18 al:1
.....................................................UAAAGCcUUUGUGAAGAAACACG...................... len:23 al:5
.....................................................UAgAGCUUUUGUGAAGAAACACG...................... len:23 al:4
.....................................................UAAAGCUUUUGUGAAGAAACA........................ len:21 al:22
.....................................................UAAAGCcUUUGUGAAGAAA.......................... len:19 al:2
.....................................................UAAAGCUUUUGUGAAGAA........................... len:18 al:9
......................................................AAAGCUUUUGUGAAGAAACACG...................... len:22 al:10
......................................................AAAGCUUUUGUGAAGAAA.......................... len:18 al:1
......................................................AAAGCUUUUGUGAAGAAAC......................... len:19 al:4
......................................................AAAGCUUUUGUGAAGAAACACa...................... len:22 al:3
.......................................................AAGCUUUUGUGAAGAAAC......................... len:18 al:1
........................................................AGCUUUUGUGAAGAAACACG...................... len:20 al:1
.........................................................GCUUUUGUGAAGAAACACa...................... len:19 al:1
..........................................................CUUUUGUGAAGAAACACG...................... len:18 al:1