Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000025l:10501030-10501125 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_14018.ps.pdf
Locus Name: Cluster_14018
AUUAUAUGAGAUGCAGUAUGAUAUUGAUGAGCACAACAAAAGGUCUAUAGGCACUUUUUGUGAUGUUCGUCAAUAUCAGAUUUCAUCCAUUAUGCA
.....(((.((((.(((.(((((((((((((((..(((((((((((...)).)))))))))..))))))))))))))).))).)))))))...... (-36.20)
.UUAUAUGuGAUGCAGUAUGAU.......................................................................... len:21 al:2
...AUAUGuGAUGCAGUAUGAU.......................................................................... len:19 al:1
....UAUGuGAUGCAGUAUGAU.......................................................................... len:18 al:1
....UAUGAGAUGCAGUAUGAU.......................................................................... len:18 al:4
......................AUUGAUaAGCACAACAAAAGG..................................................... len:21 al:1
......................AUUGAUGAGCACAACAAAAGGU.................................................... len:22 al:757
......................AUUGAUGAGCACAACAAAAGGUaUA................................................. len:25 al:2
......................AUUGAUGAGCACAcCAAAAGG..................................................... len:21 al:1
......................AUUGAUGAGCACAACAAAAGGUaU.................................................. len:24 al:1
......................AUUGAUGcGCACAACAAAAGGU.................................................... len:22 al:2
......................AUUGAUGAGCACAACAAAAGGg.................................................... len:22 al:3
......................AUUGAUGAGCACAACAAAAGGUu................................................... len:23 al:53
......................AUUGAUGAGCACAACAAAA....................................................... len:19 al:9
......................AUUGAUGAaCACAACAAAAGGU.................................................... len:22 al:2
......................AUUGAUGAGCACAACAAgAGGU.................................................... len:22 al:3
......................AUUGAUGAGCACAACAAAAaGU.................................................... len:22 al:1
......................AUcGAUGAGCACAACAAAAGGU.................................................... len:22 al:1
......................AUUGAUGAGCACAACAAAAGu..................................................... len:21 al:1
......................AcUGAUGAGCACAACAAAAGGU.................................................... len:22 al:3
......................AUUGAUGAGCACAACAAAAGG..................................................... len:21 al:81
......................gUUGAUGAGCACAACAAAAGGU.................................................... len:22 al:7
......................AUUGAUGAGCACAgCAAAA....................................................... len:19 al:1
......................AUUGAUGAGCACAACAAAAGGUCUA................................................. len:25 al:3
......................AUUGAUGAGCACAACAAAAG...................................................... len:20 al:1
......................AUUGAUGAGCACAAaAAAAGGU.................................................... len:22 al:2
......................AUUGAUGAGCACAACAuAAGGU.................................................... len:22 al:1
......................AUUGAUGAGCACAACAAAAGcU.................................................... len:22 al:2
......................AUUGAUGAGCACAACAAAgGGUC................................................... len:23 al:2
......................AUUGAUGAGCACAACAAAgGG..................................................... len:21 al:6
......................AUUGAUGAGCACAACAAAAGGa.................................................... len:22 al:9
......................AUUGAUGAGCACAACAAAAGa..................................................... len:21 al:11
......................AUUGAUGAGCACcACAAAAGGU.................................................... len:22 al:2
......................AUUGAUGAGCACAACAAAAGGc.................................................... len:22 al:64
......................AUUGAUGAGCACAACAAAgGGU.................................................... len:22 al:25
......................AUUGAUGAGCgCAACAAAAGG..................................................... len:21 al:1
......................AUUGAUGAGCACAACAAA........................................................ len:18 al:30
......................AUUGAUGAGCACAACAAAuGGU.................................................... len:22 al:1
......................AUUGAUGAGCACAACAAAAGGUCUAUA............................................... len:27 al:2
......................AUUGAUGAGCgCAACAAAAGGU.................................................... len:22 al:2
......................AUUGAUGAGCACAACAgAAGGU.................................................... len:22 al:2
......................AUUGAUGAGCACAuCAAAAGGU.................................................... len:22 al:2
......................AUUGAUGAGCACAACAAAAGGUCUAUgGGCA........................................... len:31 al:1
......................AUUGAUGAGCACAAuAAAAGGU.................................................... len:22 al:1
......................AUUGAUGAGCACAACAAAAuG..................................................... len:21 al:1
......................AUUGAUGAGCACAACAAAAGGUa................................................... len:23 al:32
......................AUUGAUGAGCACAACAAgAGG..................................................... len:21 al:1
......................AUUGAUGgGCACAACAAAAGGU.................................................... len:22 al:1
......................AUUGgUGAGCACAACAAAAGGU.................................................... len:22 al:6
......................AUUGAUGAGCACAACAAAAGGUuU.................................................. len:24 al:3
......................AUUGAUGAGCACAgCAAAAGGU.................................................... len:22 al:3
......................AUUGAUGAGCACuACAAAAGGUC................................................... len:23 al:1
......................AUUGAcGAGCACAACAAAAGGU.................................................... len:22 al:3
......................AUUGAUGAGCACAACAAAAGGUC................................................... len:23 al:33
......................AUUGAUGAGCACAACgAAAGGUC................................................... len:23 al:1
......................AUUGAUGAGCACgACAAAAGGU.................................................... len:22 al:7
.......................UUGAUGAGCACAACAAAAGGU.................................................... len:21 al:15
.......................UUGAUGAGCACAACAAAAGG..................................................... len:20 al:4
.......................UUGAUGAGCACAACAAAAGGc.................................................... len:21 al:7
.......................UUGAUGAGCACAACAAAAGa..................................................... len:20 al:1
.......................UUGAUGAGCACAACAAAAGGUu................................................... len:22 al:1
........................UGAUGAGCACAACAAAAGGU.................................................... len:20 al:2
........................UGAUGAGCACAACAAAAGGUu................................................... len:21 al:1
.........................GAUGAGCACAACAAAAGGU.................................................... len:19 al:2
.....................................AAAAGGUCUAUgGGCACUUUUUGUGAU................................ len:27 al:1
......................................AAAGGUCUAUgGGCACUUUUUGUGAU................................ len:26 al:2
....................................................ACUUUUUGUGAUGUUCGUCAAUu..................... len:23 al:2
.....................................................uUUUUUGUGAUGUUCGUCAAU...................... len:21 al:1
.....................................................uUUUUUGUGAUGUUCGUC......................... len:18 al:1
......................................................UUUUUGUGAUGUUCGUCAAc...................... len:20 al:7
......................................................UcUUUGUGAUGUUCGUCAAU...................... len:20 al:2
......................................................UUUUUGUGAUGUUCGUCAAUAUuA.................. len:24 al:2
......................................................UUUUUGUGAUGcUCGUCAAUAU.................... len:22 al:2
......................................................UUUUUGUGAUGUUCGUCA........................ len:18 al:52
......................................................UUUUUGgGAUGUUCGUCAAUA..................... len:21 al:1
......................................................UUUUUGUGgUGUUCGUC......................... len:17 al:1
......................................................UUUUUGUGAUGUUCGUCAAUc..................... len:21 al:1
......................................................UUUUUGUGAUGUUCGUCAg....................... len:19 al:1
......................................................UUUUUGUGAUGUUCGUCAAa...................... len:20 al:1
......................................................UUUUUGUGAUGUUCGUCAAU...................... len:20 al:103
......................................................UUgUUGUGAUGUUCGUCAAUAUC................... len:23 al:1
......................................................UUUUUGUGAUGUUCGUCAAUAUu................... len:23 al:98
......................................................UUUUUGUuAUGUUCGUC......................... len:17 al:1
......................................................UUUUUGUGuUGUUCGUCAAUAU.................... len:22 al:1
......................................................UUUUUGUGAUGUUCGUCAA....................... len:19 al:15
......................................................UUUUUGUGAUGUUCGUCAAUAU.................... len:22 al:223
......................................................UUUUUGUGAUGUUCGUCgAUA..................... len:21 al:3
......................................................UUUUUGUGAgGUUCGUC......................... len:17 al:1
......................................................UUUUUGUGgUGUUCGUCAAU...................... len:20 al:1
......................................................UUUUUGUGAUGUUCGUCAAUAc.................... len:22 al:17
......................................................UUUUUGUGAUaUUCGUCAAUAU.................... len:22 al:1
......................................................UUUUUGUGAUGUUCGUa......................... len:17 al:2
......................................................UUUUUGUGAUGUUCGUCAAUA..................... len:21 al:233
......................................................UcUUUGUGAUGUUCGUCA........................ len:18 al:1
......................................................UUaUUGUGAUGUUCGUCAAU...................... len:20 al:1
......................................................UUUcUGUGAUGUUCGUCAAUAU.................... len:22 al:1
......................................................UUUUUGUGAUGUUCGU.......................... len:16 al:12
......................................................UUUUUGUGAUGUUCGcCAAUA..................... len:21 al:2
......................................................UUUUUGUGAUGUUCGUCAAUAa.................... len:22 al:4
......................................................UUUUUGUGAUGUUCGgCAAUA..................... len:21 al:2
......................................................UcUUUGUGAUGUUCGUCAAUAU.................... len:22 al:1
......................................................UUUUUGUGAUGUUCGcC......................... len:17 al:3
......................................................UUUUUGUGgUGUUCGUCAAUAU.................... len:22 al:7
......................................................UUUUcGUGAUGUUCGUCAAU...................... len:20 al:1
......................................................UUUUUGUGAUGUUCGUCAAUAUg................... len:23 al:2
......................................................UUUUUGUGAUGUUCGUCAAcA..................... len:21 al:1
......................................................UUcUUGUGAUGUUCGUCAAUA..................... len:21 al:1
......................................................UUUUUGUGgUGUUCGUCAAUA..................... len:21 al:7
......................................................UUUUUGUGAUGUUCGUCAAUAUa................... len:23 al:28
......................................................UUUUUGUGAUGUUCGUCgAUAU.................... len:22 al:2
......................................................UUcUUGUGAUGUUCGUCAAUAU.................... len:22 al:1
......................................................UUUUUGUGAUGUUCGUCAAUAUgA.................. len:24 al:2
......................................................UUUUUGUGAUGUUCGcCA........................ len:18 al:3
......................................................UUUUUGUGAUGUUCGUCAgU...................... len:20 al:2
......................................................UUUUUGUGAUGUUCGUCAAUAUC................... len:23 al:11
......................................................UUUUUGcGAUGUUCGUCAAUA..................... len:21 al:1
......................................................UUUUUGUGAUGUUCGUC......................... len:17 al:71
......................................................UUUUUGUGgUGUUCGUCAA....................... len:19 al:1
......................................................UUUUUGUGgUGUUCGUCA........................ len:18 al:1
......................................................UUUUUGUGAUGUUCGUCAAg...................... len:20 al:1
......................................................UUUUUGaGAUGUUCGUCAAUAU.................... len:22 al:1
......................................................UUUUUGUGAUGUUCGUCAAUg..................... len:21 al:1
......................................................UUUUUGUGAUGUUCGUu......................... len:17 al:4
......................................................cUUUUGUGAUGUUCGUCAAUAU.................... len:22 al:3
......................................................UUUUUGUGAUGcUCGUCAAUA..................... len:21 al:2
......................................................UUUUUGUGAUGUUCGUCAAUgU.................... len:22 al:3
.......................................................UUUUGUGAUGUUCGU.......................... len:15 al:1
.......................................................UUUUGUGAUGUUCGUCAAUAUa................... len:22 al:1
.......................................................UUUUGUGAUGUUuGUCAA....................... len:18 al:2
.......................................................UUUUGUGAUGUUCGUCAAUAU.................... len:21 al:1
.......................................................UUUUGUGAUGUUCGUCAAUAUg................... len:22 al:1
.......................................................UUUUGUGAUGUUCGUCAAUAUu................... len:22 al:2
.......................................................UUUUGUGAUGUUCGUCAA....................... len:18 al:2
.......................................................UUUUGUGAUGUUCGUCAAUA..................... len:20 al:3
.......................................................UUUUGUGAUGUUCGcCAAUA..................... len:20 al:1
........................................................UUUGUGAUGUUCGUCAAUA..................... len:19 al:1
........................................................UUUGUGAUGUUCGUC......................... len:15 al:1
........................................................UUUGUGAUGUUCGUCAAUAU.................... len:20 al:3