Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ptg000023l:18708903-18708996 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_13327.ps.pdf
Locus Name: Cluster_13327
UGACGUAUCGUGGAAGAUCCCAUUCGUCUCUUGUAUUUUCCUGGUAUAUACCACGAAAAUACAAGUGACUGGUGGGAUAUUCUUUGGUUUACCA
......((((.((((.((((((((.(((.(((((((((((.((((....)))).))))))))))).))).)))))))).)))).))))...... (-39.70)
.GACGUAUCGUGGAAGAUCCCAUc...................................................................... len:23 al:1
................AUCCCAUUCGUCUCUUGUAUU......................................................... len:21 al:1
....................CAUUCGUCUCUUGUAUUUUCCUGGUAU............................................... len:27 al:1
.....................AUUCGUCUCUUGUAUUUUCCUGG.................................................. len:23 al:22
.....................AUUuGUCUCUUGUAUUUUCCUGG.................................................. len:23 al:5
.....................AUUCGUCUCUUGUAUUUUCCUG................................................... len:22 al:2
.....................AUUCGUCUCUUGUAUUUUCCU.................................................... len:21 al:2
.....................AUUCGUCUCUUGUAcUUUCCUGG.................................................. len:23 al:2
.....................AUUCGUCUCUUGUAUUUUCCUGa.................................................. len:23 al:1
.....................AUUuGUCUCUUGUAUUUUCCUGGU................................................. len:24 al:2
......................UUuGUCUCUUGUAUUUUCCU.................................................... len:20 al:7
......................UUCGUCUCUUGUAUUUUu...................................................... len:18 al:2
......................UUuGUCUCUUGUAUUUUCCUGGUA................................................ len:24 al:2
......................UUCGUCUCUUGUAUUUUCCgGGU................................................. len:23 al:1
......................UUCGUCUCUgGUAUUUUCCUGG.................................................. len:22 al:2
......................UUCGUCUCUUGUAUUUUCCU.................................................... len:20 al:8
......................UUCGUCUCUUGUAUUUUCCUGa.................................................. len:22 al:40
......................UUCGUCUCUUGUAUUUUCCUG................................................... len:21 al:4
......................UUCGUCUCUUGUcUUUUCCUGG.................................................. len:22 al:1
......................UUCGUCUCUUGUAUUUUCCUGGUA................................................ len:24 al:1
......................UUCGUCUCUUGUAUUUUCCUGGUAUu.............................................. len:26 al:2
......................UUuGUCUCUUGUAUUUUCCUGGU................................................. len:23 al:76
......................UUCGcCUCUUGUAUUUUCCUGG.................................................. len:22 al:2
......................UUCGUCUCUUGUAUUUUCCUGGUAUA.............................................. len:26 al:3
......................UUCGUCUCcUGUAUUUUCCUGG.................................................. len:22 al:1
......................UUuGUCUCUUGUAUUUUCC..................................................... len:19 al:2
......................UUuGUCUCUUGUAUUUUCCUG................................................... len:21 al:1
......................UUCGUCUCUUGUAUUUUCC..................................................... len:19 al:1
......................UUCGUCUCUUGUAUcUUCCUGG.................................................. len:22 al:1
......................UUCGUCUCUUGUAUUUUCCUGG.................................................. len:22 al:321
......................UUCGUCUCUUGUAUUcUCCUGG.................................................. len:22 al:2
......................UUCGUCUaUUGUAUUUUCCUGG.................................................. len:22 al:1
......................cUCGUCUCUUGUAUUUUCCUGG.................................................. len:22 al:1
......................UUCGUCUCUUGUAUUUUCCUGGc................................................. len:23 al:5
......................UUCGUCUCUUGUAUUUUCCUGGUc................................................ len:24 al:2
......................UUCGUCUCUUGUAUUUUCCUGGU................................................. len:23 al:40
......................UUuGUCUCUUGUAUUUUCCUGGUAUA.............................................. len:26 al:1
......................UUCGUCUCUUGUAUUUUCCUGu.................................................. len:22 al:2
......................UUCGUCUCUUGUAUUUUCCc.................................................... len:20 al:1
......................aUCGUCUCUUGUAUUUUCCUGG.................................................. len:22 al:1
......................UgCGUCUCUUGUAUUUUCCUGGU................................................. len:23 al:1
......................UUCGUCUCUUGUAUUUUCCUGGUu................................................ len:24 al:6
......................UaCGUCUCUUGUAUUUUCCUGG.................................................. len:22 al:1
......................UUuGUCUCUUGUAUUUUCCUGGUAU............................................... len:25 al:4
......................UUuGUCUCUUGUAUUUUCCUGG.................................................. len:22 al:51
.......................UCGUCUCUUGUAUUUUCCUGcU................................................. len:22 al:1
.......................UuGUCUCUUGUAUUUUCCUGG.................................................. len:21 al:1
.......................UCGUCUCUUGUAUUUUCCUGGa................................................. len:22 al:3
.......................UCGUCUCUUGUAUUUUCCUGGc................................................. len:22 al:7
.......................UCGUCUCUUGUAUUUUCCUGGcAU............................................... len:24 al:1
.......................UCGUCUCUUGUAUUUUCCUGaU................................................. len:22 al:1
.......................UCGUCUCUUGUAUUUUCCUGa.................................................. len:21 al:5
.......................UCGUCUCUUGUAUUUUCCUa................................................... len:20 al:1
.......................UCGUCUCUUGUAUUUUCCUGGUu................................................ len:23 al:5
.......................UCGUCUCUUGUAUUUUCCUGGU................................................. len:22 al:23
.......................UCGUCUCUUGUAUUUUCCUcG.................................................. len:21 al:1
.......................UCGUCUCUUGUAUUUUCCUGGUA................................................ len:23 al:2
.......................UuGUCUCUUGUAUUUUCCUGGUAUA.............................................. len:25 al:1
.......................UCGUCUCUUGUAUUUUCCUGu.................................................. len:21 al:1
.......................UCGUCUCUUGUAUUUUCCUGG.................................................. len:21 al:29
.......................UCGUCUCUUGUAUUUUCCU.................................................... len:19 al:5
.......................UuGUCUCUUGUAUUUUCCUGGU................................................. len:22 al:7
........................CGUCUCUUGUAUUUUCCUGGU................................................. len:21 al:4
........................CGUCUCUUGUAUUUUCCUG................................................... len:19 al:3
........................uGUCUCUUGUAUUUUCCUGGUA................................................ len:22 al:1
........................uGUCUCUUGUAUUUUCCUGGU................................................. len:21 al:43
........................CGUCUCUUGUAUUUUCCUGGUu................................................ len:22 al:3
........................uGUCUCUUGUAUUUUCCU.................................................... len:18 al:2
........................CGUCUCUUGUAUUUUCCUGG.................................................. len:20 al:11
........................CGUuUCUUGUAUUUUCCUGGU................................................. len:21 al:2
........................CGUCUCUUGUAUUUUCCUGa.................................................. len:20 al:3
........................uGUCUCUUGUAUUUUCCUGG.................................................. len:20 al:21
.............................................AUAUACCAaGAAAAUACAAGUGACUGG...................... len:27 al:1
...................................................CACGAAAAUACAAGUGACUGGUGu................... len:24 al:1
...................................................CACGAAAAUACAAGUGACUGGUa.................... len:23 al:2
...................................................CACGAAAAUACAAGUGACUGGUu.................... len:23 al:6
...................................................CACGAAAAUACAAGUGACUGGUc.................... len:23 al:1
...................................................CAgGAAAAUACAAGUGACUGGU..................... len:22 al:1
...................................................CACGAAAAUACAAGUGACUGGU..................... len:22 al:19
...................................................CACGAAAAUACAAGUGAuUGGU..................... len:22 al:1
...................................................CACGAAAAUACAAGUGACUGG...................... len:21 al:1
...................................................CACGAAAAUACAAGUGACUGGc..................... len:22 al:2
...................................................gACGAAAAUACAAGUGACUGGUG.................... len:23 al:1
...................................................CACGAAAAUACAAGUGACUGGUG.................... len:23 al:13
....................................................ACGAAAAUACAgGUGACUGGU..................... len:21 al:1
....................................................ACGAAAAUACAAGUGACUGGUGG................... len:23 al:45
....................................................ACGAAAAUACAAGUGACUG....................... len:19 al:2
....................................................ACGAAAAUACAAGUGACUGG...................... len:20 al:3
....................................................ACGAAAAUACAAGUGACUGGUGGu.................. len:24 al:5
....................................................ACGAAAAUACAAGUGACUGGUGu................... len:23 al:74
....................................................ACGAAAAUACgAGUGACUGGUG.................... len:22 al:1
....................................................ACGAAAAUACAAGUGACUGGUGc................... len:23 al:3
....................................................ACGAAAAUACAAGUGACUGGUa.................... len:22 al:22
....................................................ACGAAAAUACAAGUGACUGGUGa................... len:23 al:3
....................................................ACGAAAAUACAAGUGACUGu...................... len:20 al:1
....................................................ACGAAAAUACAgGUGACUGGUGG................... len:23 al:1
....................................................uCGAAAAUACAAGUGACUGGUGG................... len:23 al:1
....................................................ACGAAAAUACAAGUGACUGGU..................... len:21 al:35
....................................................ACGAAAAUuCAAGUGACUGGUG.................... len:22 al:1
....................................................ACGAAAAUACAAGUGACUGGUGGa.................. len:24 al:1
....................................................ACGAAAAUACAAGUGACUGGUu.................... len:22 al:17
....................................................gCGAAAAUACAAGUGACUGGUG.................... len:22 al:2
....................................................ACGAAAAUACAAGUGACUGGUG.................... len:22 al:182
....................................................ACGAAAAUgCAAGUGACUGGUG.................... len:22 al:1
....................................................ACGAAAAUACAAGUGAuUGGUG.................... len:22 al:1
....................................................ACGAAAAUACAAGcGACUGGUG.................... len:22 al:2
.....................................................CGAAAAUACAAGUGACUG....................... len:18 al:1
.....................................................CGAAAAUACAAGUGACUGG...................... len:19 al:1
..............................................................AAGUGACUGGUGaGA................. len:15 al:1