Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000023l:37965243-37965338 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_13111.ps.pdf
Locus Name: Cluster_13111
GGUGCAUGAUCACGUGAUUGUCCAAUUACAGCUGUCCAAUUUGAACUUUUUGUAAUCGGACACCUGUAAUUGGAUACCCACAUGAUUUUCACACCA
((((...(((((.(((..(((((((((((((.(((((.(((...((.....))))).))))).)))))))))))))..))).)))))....)))). (-39.70)
....................UCCAAUUACAGCUGUCCAAUU....................................................... len:21 al:1
......................................................AUCGGACACCUGUAAUUGGAU..................... len:21 al:1
.......................................................UCGGACACCUGUAAUUGGAUACu.................. len:23 al:1
.......................................................UaGGACACCUGUAAUUGGAU..................... len:20 al:2
.......................................................UCGGACACCUGUAAUUGGAU..................... len:20 al:2
.......................................................UaGGACACCUGUAAUUGGAUA.................... len:21 al:1
.......................................................UCGGACACCUGUAAUUGGAUu.................... len:21 al:1
.......................................................UCGGACACCUGUAAUUaGAUA.................... len:21 al:2
.......................................................UCGGACACCUGUAAUUGGAUA.................... len:21 al:6
.......................................................cCGGACACCUGUAAUUGGAUA.................... len:21 al:1