Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ptg000023l:2636673-2636768 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_12083.ps.pdf
Locus Name: Cluster_12083
GGCACGCGAUCGUGUGGGUGUCCAAUUACAGCUGUCCAAUUUGAACUUUUUGUAAUUGGACACCUGUAAUUGGAUACCCACGUGAUUUUCACGCCA
(((....((((((((((((((((((((((((.(((((((((...((.....))))))))))).)))))))))))))))))))))))).....))). (-53.10)
....................UCCAAUUACAGCUGUCCAAUU....................................................... len:21 al:1
.............................................CUUUUUGUAAUUGGACAuCUGUAAUUGGAUA.................... len:31 al:1
.............................................CUUUUUGUAAUUGGACACCUGUAAUUGGAUA.................... len:31 al:2
.................................................UUGUAAUUGGACAuCUGUAAUUGG....................... len:24 al:1
..................................................UGUAAUUGGACACCUGUAAUUGG....................... len:23 al:1
..................................................UGUAAUUGGACACCUGUAAUUGGAU..................... len:25 al:1
...................................................GUAAUUGGACAuCUGUAAUUGG....................... len:22 al:1
......................................................AUUGGACACCUGUAAUUGGAUA.................... len:22 al:1
.......................................................UUGGACACCUGUAAUUGGAUu.................... len:21 al:4
.......................................................UUGGACACCaGUAAUUGGAUA.................... len:21 al:1
.......................................................UUGGACAuCUGUAAUUGGAU..................... len:20 al:5
.......................................................UUGGACACCUGUAAUUGGAUAC................... len:22 al:2
.......................................................UUGGgCACCUGUAAUUGGAUA.................... len:21 al:1
.......................................................UUGGACACCUGUAAUUGGAUACu.................. len:23 al:10
.......................................................UUGaACACCUGUAAUUGGAU..................... len:20 al:3
.......................................................UUGaACACCUGUAAUUGGAUA.................... len:21 al:2
.......................................................UUGGACACCUGUAAUUGGAUc.................... len:21 al:1
.......................................................UUGGACAuCUGUAAUUGGAUAC................... len:22 al:2
.......................................................UUGGACACCUGUAAUUGGAU..................... len:20 al:26
.......................................................UUGGACAuCUGUAAUUGGAUA.................... len:21 al:1
.......................................................UUGGACACCUGUAAUUGGAUA.................... len:21 al:45
........................................................UGGACACCUGUAAUUGGAUACu.................. len:22 al:1