Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000023l:2717414-2717509 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_11631.ps.pdf
Locus Name: Cluster_11631
GGCACGCGAUCAUGUGGGUGUCCAAUUACAGCUGUCCAAUUUGAACUUUUUGUAAUUGGACACCUGUAAUUGGAUACCCACGUGAUUUUCACGCCA
(((....((((((((((((((((((((((((.(((((((((...((.....))))))))))).)))))))))))))))))))))))).....))). (-56.50)
....................UCCAAUUACAGCUGUCCAAUU....................................................... len:21 al:1
...........................................AACUUUUUGUAAUUGGACACCUGUAAUU......................... len:28 al:1
............................................ACUUUUUGUAAUUGGACA.................................. len:18 al:1
.............................................CUUUUUGUAAUUGGACACCUGUAAUUGGAUA.................... len:31 al:2
..............................................UUUUUGUAAUUGaACACCUGUAAUUGGAUA.................... len:30 al:1
...................................................GUAAUUGGACACCUGUAAUUGa....................... len:22 al:1
...................................................GUAAUUGGACAuCUGUAAUUGG....................... len:22 al:1
....................................................UAAUUGGACACCUGUAAUU......................... len:19 al:1
.......................................................UUGGACACCUGUAAUUGGAUACu.................. len:23 al:8
.......................................................UUGGgCACCUGUAAUUGGAUA.................... len:21 al:1
.......................................................UUGGACAuCUGUAAUUGGAUA.................... len:21 al:3
.......................................................UUGaACACCUGUAAUUGGAUA.................... len:21 al:1
.......................................................UUGGACAuCUGUAAUUGGAU..................... len:20 al:3
.......................................................UUGGACACCUGUAAUUGGAU..................... len:20 al:23
.......................................................UUGGACACCUGUAAUUGGAUAC................... len:22 al:1
.......................................................UUGGACAuCUGUAAUUGGAUAC................... len:22 al:1
.......................................................UUGGACACCUGUAAUUGGAUc.................... len:21 al:2
.......................................................UaGGACACCUGUAAUUGGAU..................... len:20 al:1
.......................................................UUGGACACCUGUAAUUGGAUA.................... len:21 al:47
.......................................................UUGGACACCUGUAAUUGGAUu.................... len:21 al:2
.......................................................UaGGACACCUGUAAUUGGAUA.................... len:21 al:1
.......................................................UUGaACACCUGUAAUUGGAU..................... len:20 al:3
........................................................UGGACACCUGUAAUUGGAUACu.................. len:22 al:2