Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000023l:2595345-2595440 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_11625.ps.pdf
Locus Name: Cluster_11625
GGCACGCGAUCGUGUGGGUGUCCAAUUACAGCUGUCCAAUUUGAACUUUUUGUAAUUGGACACCUGUAAUUGGAUACCCACGUGAUUUUCACGCCA
(((....((((((((((((((((((((((((.(((((((((...((.....))))))))))).)))))))))))))))))))))))).....))). (-53.10)
....................UCCAAUUACAGCUGUuCAAUU....................................................... len:21 al:2
....................UCCAAUUACAGCUGUCCAAUU....................................................... len:21 al:1
.............................................CUUUUUGUAAUUGGACACCUGUAAUU......................... len:26 al:1
.............................................CUUUUUGUAAUUGGACACCUGUAAU.......................... len:25 al:1
.............................................CUUUUUGUAAUUGGACACCUGUAAUUGGAUA.................... len:31 al:2
...................................................GUAAUUGGACAuCUGUAAUUGG....................... len:22 al:1
....................................................UAAUUGGACACCUGUAAUU......................... len:19 al:1
.......................................................UUGGACACCUGUAAUUGGAUACa.................. len:23 al:1
.......................................................UUGGACAuCUGUAAUUGGAUA.................... len:21 al:2
.......................................................UUGGACACCUGUAAUUGGAUACu.................. len:23 al:6
.......................................................UUGaACACCUGUAAUUGGAUA.................... len:21 al:1
.......................................................UUGGACACCUGUAAUUGGAU..................... len:20 al:25
.......................................................UUGGACACCUGUAAUUGGAUACC.................. len:23 al:2
.......................................................UUGGACACCUGUAAUUGGAUg.................... len:21 al:1
.......................................................UUGaACACCUGUAAUUGGAU..................... len:20 al:2
.......................................................UUGGACACCUGcAAUUGGAUA.................... len:21 al:1
.......................................................UaGGACACCUGUAAUUGGAU..................... len:20 al:1
.......................................................UUGGACACCUGUAAUUGGAUAC................... len:22 al:1
.......................................................UUGGACAuCUGUAAUUGGAU..................... len:20 al:4
.......................................................UUGGACACCUGUAAUUGGAUu.................... len:21 al:2
.......................................................UUGGACACCUGUAAUUGGAUA.................... len:21 al:42
.......................................................UUGGACAuCUGUAAUUGGAUACC.................. len:23 al:1
........................................................UGGACACCUGUAAUUGGAUACu.................. len:22 al:1