Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000021l:11127956-11128047 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_11131.ps.pdf
Locus Name: Cluster_11131
AUUGGCCAAUGUUCUGGUCAAAUGGUGUACCUGUAGUUUAUUUUUUACAAAAUUAAUUCCAUGUACACCGUUUGACAGGAACCCCAGGGUUA
..(((((...(((((.((((((((((((((.((.((((.(((((....))))).)))).)).)))))))))))))).))))).....))))) (-34.50)
.......AAUGUUCUGGUCAAAUGGUGUACCUGUAGU....................................................... len:30 al:1
...........UUCUGGUCAAAUGGUGUACCUGUAGU....................................................... len:26 al:1
............UCUGGUCAAAUGGUGUACCUGUAGUU...................................................... len:26 al:1
.............CUGGUCAAAUGGUGUACCUGUAGU....................................................... len:24 al:1
..............UGGUCAAAUGGUGUACCUGUAGUc...................................................... len:24 al:1
...................AAAUGGUGUACCUGUAGU....................................................... len:18 al:1
...................AAAUGGUGUACCUGUAGUUUAU................................................... len:22 al:1
.....................AUGGUGUACCUGUAGUUUAUU.................................................. len:21 al:1
.....................AUGGUGUACCUGUAGUUUAU................................................... len:20 al:1
......................UGGUGUACCUGUAGUUUAUUUU................................................ len:22 al:21
......................UGGUGUACCUGUAGUUUAUUc................................................. len:21 al:2
......................UGGUGUACCUGUAGUUUAUU.................................................. len:20 al:4
......................UGGUGUACCUGUAGUUUAUUUc................................................ len:22 al:1
......................UGGUGUACCUGUAGUUUAUc.................................................. len:20 al:1
......................UGGUGUACCUGUAGUUUAUUUUU............................................... len:23 al:1
......................UGGUGUACCUGUAGUUUAUUUUa............................................... len:23 al:3
......................UGGUGUACCUGUAGUUUAUUU................................................. len:21 al:4
.......................GGUGUACCUGUAGUUUAUU.................................................. len:19 al:1
........................GUGUACCUGUAGUUUAUU.................................................. len:18 al:1
..................................................AAUUAAUUCCAUGUACACCGUUU................... len:23 al:1
..................................................AAUUAAcUCCAUGUACACCGUU.................... len:22 al:1
..................................................AAUUAAUUCCAUGUACACCGUc.................... len:22 al:1
..................................................AAUUAAUUCCAUGUACACCGUU.................... len:22 al:3
...................................................gUUAAUUCCAUGUACACCGUU.................... len:21 al:1
....................................................UUAAUUCCAUGUACACCGUUc................... len:21 al:1
....................................................UUAAUUCCAUGUACACCGUU.................... len:20 al:1
......................................................AAUUCCAUGUACACCGUUUGgCA............... len:23 al:1
.........................................................UCCAUGUACACCGUUUGACAGGAACuCCAGG.... len:31 al:1
................................................................ACACCGUUUGACAGGAACCCCAGGGUU. len:27 al:1