Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ptg000020l:10483736-10483827 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_10452.ps.pdf
Locus Name: Cluster_10452
UGCUAGUACUGAAUUUCUGCUGGCAAAACCAGCCUUCUUCAGAUGCCUAAAGAAGGUCGGUUUGUCCAGCCGAAAUAUACAGUAGUACUACA
...((.(((((.(((((.(((((..(((((.((((((((.((....)).)))))))).)))))..))))).)))))...))))).))..... (-37.40)
UGCUAGUACUGAAUUUCUGu........................................................................ len:20 al:2
UGCUAGUACUGAAUUUCUGC........................................................................ len:20 al:36
.GCUAGUACUGAAUUUCUGC........................................................................ len:19 al:13
..CUAGUACUGAAUUUCUGC........................................................................ len:18 al:5
....................UGGCAAAACCAGCCUUCUUCAG.................................................. len:22 al:1
....................UGGCAAAACCAGCCUUCUUCA................................................... len:21 al:1
....................UGGCAAAACCAGCCUUCUUC.................................................... len:20 al:1
........................................AGAUGCCUAgAGAAGGUCGGUUUGUCCAGC...................... len:30 al:1
........................................AGAUGCCUAAAGAAGGUCGGUUUGUCCAGC...................... len:30 al:5
........................................AGAUGCCUAAAGAAGGUCGGUUUGUCCAGCa..................... len:31 al:1
.........................................GAUGCCUAAAGAAGGUCGGUUUGUCCAGu...................... len:29 al:2
.........................................GAUGCCUAAAGAAGGUCGGUUUGUCCAGCC..................... len:30 al:1
.........................................GAUGCCUAAAGAAGGUCGGUUUGUCCAGCu..................... len:30 al:2
.........................................GAUGCCUAAAGAAGGUCGGUUUcUCCAGC...................... len:29 al:1
.........................................GAUGCCUAAAGAAGGUCGGUUUGUCCAGC...................... len:29 al:5
.........................................GAUGCCUAAAGAAGGUCGGUUUGUC.......................... len:25 al:4
.........................................GAUGCCUAAAGAAGGUCGGUUUGUCCAGCg..................... len:30 al:1
..........................................AUGCCUAAAGAAGGUCGGUUUGUCCAGC...................... len:28 al:1
..........................................AUGCCUAAAGAAGGUCGGUUUGUCCAGCu..................... len:29 al:5
...............................................UAAAGAAGGUCGGUUUGUCCAGCu..................... len:24 al:17
...............................................UAAAGAuGGUCGGUUUGUCCA........................ len:21 al:1
...............................................UAgAGAAGGUCGGUUUGUCCAGC...................... len:23 al:1
...............................................UAAAGAAGGUCGGUUUGUCCAa....................... len:22 al:1
...............................................UAAAGAAGGUCGGUUUGUCCAG....................... len:22 al:1
...............................................UAAAGAAGGUCGGUUUGUCCAGu...................... len:23 al:32
...............................................UAAAGAAGGUCGGUUUGUCCAGCC..................... len:24 al:5
...............................................UAAAGAAGGUCGGUUUGUCCAGCa..................... len:24 al:3
...............................................UAAAGAAGGUCGGUUUGUCCAGCg..................... len:24 al:1
...............................................UAAAGAAGGUCGGUUUGUCCAGa...................... len:23 al:3
...............................................UAAAGAAGGUCGGUUUGcC.......................... len:19 al:1
...............................................UAAAGAAGGUCGGUUUGUCCAGC...................... len:23 al:33
...............................................UAAAGAAGGUCGGUUUGUCC......................... len:20 al:4
................................................AAAGgAGGUCGGUUUGUCCAGC...................... len:22 al:2
................................................AAAGAAGGcCGGUUUGUCCAGC...................... len:22 al:2
................................................AAcGAAGGUCGGUUUGUCCAGC...................... len:22 al:1
................................................AgAGAAGGUCGGUUUGUCCAGC...................... len:22 al:3
................................................AAAGAAGGUCGGUUUGUCC......................... len:19 al:62
................................................AAAGAAGGUCGGUUUGUCCAGu...................... len:22 al:493
................................................AAAGAAGGUCGGUUUGUuC......................... len:19 al:1
................................................AAAGAgGGUCGGUUUGUCCAGC...................... len:22 al:2
................................................AAAGAAGGUCGGUUUGUCCAGCC..................... len:23 al:58
................................................uAAGAAGGUCGGUUUGUCCAGC...................... len:22 al:1
................................................AAAGAAGGUCGGUUUGUCCAGuC..................... len:23 al:3
................................................AAAGAAGGUCGGUUUGUCCg........................ len:20 al:2
................................................AAAGAAGGUCGGUUUGUCa......................... len:19 al:9
................................................AAAGAuGGUCGGUUUGUCCAGC...................... len:22 al:1
................................................AAAGAAGGUCGGUUUGUCCgGC...................... len:22 al:1
................................................gAAGAAGGUCGGUUUGUCCAGC...................... len:22 al:3
................................................AAAGAAGGUCGGUUUGUCCAGa...................... len:22 al:22
................................................AAAGAcGGUCGGUUUGUCCAGC...................... len:22 al:1
................................................AAAGAAGGUCGGUUUGUCCAGC...................... len:22 al:709
................................................AAAGAAGGUCGGUUUGUCg......................... len:19 al:1
................................................AAAGAAGGUCGGUUcGUCCAGC...................... len:22 al:3
................................................AAAGAAGGUCGGUUUGUCCAGCu..................... len:23 al:325
................................................AAAGAAGGUCGGUUUGUCCAGg...................... len:22 al:5
................................................AAAGAAGGgCGGUUUGUCCAGC...................... len:22 al:1
................................................AAAGAAGGUCaGUUUGUCC......................... len:19 al:1
................................................AAAGAAGGUCGGUUUGUCCAG....................... len:21 al:12
................................................AAAGAAGGUCGGcUUGUCC......................... len:19 al:2
................................................AAAGAAGGUCaGUUUGUCCAGC...................... len:22 al:1
................................................AAAGAAGGUCGGUUUGUCCAaC...................... len:22 al:1
................................................AAAGAAGGUuGGUUUGUCCAGC...................... len:22 al:2
................................................AAAGAAGGUCGGUUUGUCCA........................ len:20 al:6
................................................AAAGAAGGUCGGUUUGUC.......................... len:18 al:12
................................................AAAGAAGGUCGGUUUGUCCuGC...................... len:22 al:1
................................................AAAGAAGGUCGGUUUGcCCAGC...................... len:22 al:2
................................................AAAGAAGGUCGGUUUGUCCAGCg..................... len:23 al:7
................................................AAAGAAGGUCGGUUUGgC.......................... len:18 al:1
................................................AAAGAAGGUCGGUUUGUCCAGCa..................... len:23 al:35
................................................AAAGAAGGUCGGUUUGUCCAuC...................... len:22 al:1
.................................................AAGAAGGUCGGUUUGUCCAGu...................... len:21 al:4
.................................................AAGAAGGUCGGUUUGUCCA........................ len:19 al:2
.................................................AAGAAGGUCGGUUUGUCCAGCa..................... len:22 al:1
.................................................AAGAAGGUCGGUUUGUCCAGC...................... len:21 al:1
..................................................AGAAGGUCGGUUUGUCCAGu...................... len:20 al:2
..................................................AGAAGGUCGGUUUGUCCAGCa..................... len:21 al:1
..................................................AGAAGGUCGGUUUGUCCAGCu..................... len:21 al:7
..................................................AGAAGGUCGGUUUGUCCAGC...................... len:20 al:1
...................................................GAAGGUCGGUUUGUCCAGCu..................... len:20 al:2
...................................................GAAGGUCGGUUUGUC.......................... len:15 al:1
...................................................GAAGGUCGGUUUGUCCAGC...................... len:19 al:2