Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000020l:10483736-10483827 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_10051.ps.pdf
Locus Name: Cluster_10051
UGCUAGUACUGAAUUUCUGCUGGCAAAACCAGCCUUCUUCAGAUGCCUAAAGAAGGUCGGUUUGUCCAGCCGAAAUAUACAGUAGUACUACA
...((.(((((.(((((.(((((..(((((.((((((((.((....)).)))))))).)))))..))))).)))))...))))).))..... (-37.40)
UGCUAGUACUGAAUUUCUGu........................................................................ len:20 al:2
UGCUAGUACUGAAUUUCUGC........................................................................ len:20 al:34
.GCUAGUACUGAAUUUCUGC........................................................................ len:19 al:13
..CUAGUACUGAAUUUCUGC........................................................................ len:18 al:5
....................UGGCAAAACCAGCCUUCUUCAG.................................................. len:22 al:1
....................UGGCAAAACCAGCCUUCUUC.................................................... len:20 al:1
....................UGGCAAAACCAGCCUUCUUCA................................................... len:21 al:1
........................................AGAUGCCUAgAGAAGGUCGGUUUGUCCAGC...................... len:30 al:1
........................................AGAUGCCUAAAGAAGGUCGGUUUGUCCAGCa..................... len:31 al:1
........................................AGAUGCCUAAAGAAGGUCGGUUUGUCCAGC...................... len:30 al:5
.........................................GAUGCCUAAAGAAGGUCGGUUUGUCCAGCC..................... len:30 al:1
.........................................GAUGCCUAAAGAAGGUCGGUUUcUCCAGC...................... len:29 al:1
.........................................GAUGCCUAAAGAAGGUCGGUUUGUC.......................... len:25 al:4
.........................................GAUGCCUAAAGAAGGUCGGUUUGUCCAGCu..................... len:30 al:2
.........................................GAUGCCUAAAGAAGGUCGGUUUGUCCAGu...................... len:29 al:2
.........................................GAUGCCUAAAGAAGGUCGGUUUGUCCAGCg..................... len:30 al:1
.........................................GAUGCCUAAAGAAGGUCGGUUUGUCCAGC...................... len:29 al:5
..........................................AUGCCUAAAGAAGGUCGGUUUGUCCAGCu..................... len:29 al:4
...............................................UAAAGAAGGUCGGUUUGUCCAGCg..................... len:24 al:1
...............................................UAAAGAAGGUCGGUUUGUCCAGC...................... len:23 al:25
...............................................UAAAGAAGGUCGGUUUGUCCAG....................... len:22 al:1
...............................................UAAAGAuGGUCGGUUUGUCCA........................ len:21 al:1
...............................................UAAAGAAGGUCGGUUUGUCCAGCC..................... len:24 al:2
...............................................UAgAGAAGGUCGGUUUGUCCAGC...................... len:23 al:1
...............................................UAAAGAAGGUCGGUUUGcC.......................... len:19 al:1
...............................................UAAAGAAGGUCGGUUUGUCCAGa...................... len:23 al:3
...............................................UAAAGAAGGUCGGUUUGUCCAGu...................... len:23 al:28
...............................................UAAAGAAGGUCGGUUUGUCCAa....................... len:22 al:1
...............................................UAAAGAAGGUCGGUUUGUCCAGCu..................... len:24 al:16
...............................................UAAAGAAGGUCGGUUUGUCCAGCa..................... len:24 al:3
...............................................UAAAGAAGGUCGGUUUGUCC......................... len:20 al:4
................................................AAAGAAGGUCGGUUUGUCa......................... len:19 al:9
................................................AAAGAAGGUCGGUUUGUCCgGC...................... len:22 al:1
................................................AAAGAcGGUCGGUUUGUCCAGC...................... len:22 al:1
................................................AAAGAAGGUCGGUUUGUCC......................... len:19 al:60
................................................AAAGgAGGUCGGUUUGUCCAGC...................... len:22 al:1
................................................AAAGAAGGcCGGUUUGUCCAGC...................... len:22 al:2
................................................AAAGAAGGUCGGUUUGUCCA........................ len:20 al:6
................................................AAAGAuGGUCGGUUUGUCCAGC...................... len:22 al:1
................................................gAAGAAGGUCGGUUUGUCCAGC...................... len:22 al:3
................................................AAAGAAGGUCGGUUUGUCg......................... len:19 al:1
................................................AAAGAAGGUCGGUUUGgC.......................... len:18 al:1
................................................AAAGAAGGUCaGUUUGUCCAGC...................... len:22 al:1
................................................AAAGAAGGUCGGUUUGUCCAGC...................... len:22 al:642
................................................AAAGAAGGUCGGUUUGcCCAGC...................... len:22 al:2
................................................AAAGAAGGUCGGUUUGUCCAGCa..................... len:23 al:35
................................................AAAGAAGGUCGGUUUGUCCAGuC..................... len:23 al:3
................................................AAAGAAGGUCGGUUcGUCCAGC...................... len:22 al:3
................................................uAAGAAGGUCGGUUUGUCCAGC...................... len:22 al:1
................................................AAAGAAGGUuGGUUUGUCCAGC...................... len:22 al:2
................................................AAAGAAGGUCGGUUUGUCCAaC...................... len:22 al:1
................................................AAAGAAGGUCGGUUUGUCCAG....................... len:21 al:10
................................................AAAGAAGGUCGGUUUGUCCAGCC..................... len:23 al:56
................................................AAAGAAGGUCGGcUUGUCC......................... len:19 al:2
................................................AAAGAAGGUCGGUUUGUCCg........................ len:20 al:2
................................................AgAGAAGGUCGGUUUGUCCAGC...................... len:22 al:3
................................................AAAGAAGGUCGGUUUGUCCAGu...................... len:22 al:457
................................................AAAGAAGGUCGGUUUGUC.......................... len:18 al:10
................................................AAcGAAGGUCGGUUUGUCCAGC...................... len:22 al:1
................................................AAAGAAGGUCaGUUUGUCC......................... len:19 al:1
................................................AAAGAAGGUCGGUUUGUCCAGCg..................... len:23 al:7
................................................AAAGAAGGUCGGUUUGUCCAGg...................... len:22 al:5
................................................AAAGAAGGUCGGUUUGUuC......................... len:19 al:1
................................................AAAGAAGGUCGGUUUGUCCAGa...................... len:22 al:21
................................................AAAGAAGGgCGGUUUGUCCAGC...................... len:22 al:1
................................................AAAGAAGGUCGGUUUGUCCuGC...................... len:22 al:1
................................................AAAGAAGGUCGGUUUGUCCAuC...................... len:22 al:1
................................................AAAGAAGGUCGGUUUGUCCAGCu..................... len:23 al:309
................................................AAAGAgGGUCGGUUUGUCCAGC...................... len:22 al:2
.................................................AAGAAGGUCGGUUUGUCCAGCa..................... len:22 al:1
.................................................AAGAAGGUCGGUUUGUCCAGu...................... len:21 al:4
.................................................AAGAAGGUCGGUUUGUCCAGC...................... len:21 al:1
.................................................AAGAAGGUCGGUUUGUCCA........................ len:19 al:2
..................................................AGAAGGUCGGUUUGUCCAGCu..................... len:21 al:6
..................................................AGAAGGUCGGUUUGUCCAGCa..................... len:21 al:1
..................................................AGAAGGUCGGUUUGUCCAGu...................... len:20 al:1
..................................................AGAAGGUCGGUUUGUCCAGC...................... len:20 al:1
...................................................GAAGGUCGGUUUGUCCAGCu..................... len:20 al:2
...................................................GAAGGUCGGUUUGUCCAGC...................... len:19 al:2
...................................................GAAGGUCGGUUUGUC.......................... len:15 al:1