A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2025-01-04, 11:47 PST
based on data in:
/home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark
General Statistics
Showing 40/40 rows and 1/2 columns.| Sample Name | % Aligned |
|---|---|
| 10--1E7_R1_001 | 58.0% |
| 1A10_R1_001 | 56.7% |
| 1A12_R1_001 | 60.5% |
| 1A1_R1_001 | 59.6% |
| 1A3_R1_001 | 55.8% |
| 1A5_R1_001 | 58.5% |
| 1A6_R1_001 | 60.1% |
| 1A8_R1_001 | 50.5% |
| 1B10_R1_001 | 54.9% |
| 1B1_R1_001 | 59.1% |
| 1B2_R1_001 | 57.6% |
| 1B4_R1_001 | 63.2% |
| 1B5_R1_001 | 60.0% |
| 1C6_R1_001 | 57.6% |
| 1C8_R1_001 | 59.6% |
| 1C9_R1_001 | 60.8% |
| 1D3_R1_001 | 61.7% |
| 1D7_R1_001 | 60.3% |
| 1D8_R1_001 | 57.6% |
| 1D9_R1_001 | 53.0% |
| 1F1_R1_001 | 62.2% |
| 1F5_R1_001 | 59.1% |
| 1F7_R1_001 | 61.8% |
| 1F9_R1_001 | 60.5% |
| 1G4_R1_001 | 2.2% |
| 1G5_R1_001 | 51.0% |
| 1H11_R1_001 | 52.5% |
| 1H2_R1_001 | 53.4% |
| 1H3_R1_001 | 61.5% |
| 1H5_R1_001 | 53.7% |
| 1H6_R1_001 | 54.3% |
| 1H9_R1_001 | 58.3% |
| 2A3_R1_001 | 58.7% |
| 2C2_R1_001 | 55.9% |
| 2D1_R1_001 | 60.8% |
| 2D2_R1_001 | 58.8% |
| 2G2_R1_001 | 60.6% |
| 2H3_R1_001 | 58.7% |
| 39--2E2_R1_001 | 58.7% |
| 6--1E3_R1_001 | 58.5% |
Bismark
Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.DOI: 10.1093/bioinformatics/btr167.
