[2025-02-19 12:14:38,240] multiqc [DEBUG ] This is MultiQC v1.14 [2025-02-19 12:14:38,241] multiqc [DEBUG ] Found command line config: {'sp': {'fastp': {'fn': '*report.json'}}} [2025-02-19 12:14:38,241] multiqc [DEBUG ] Added to filename patterns: [{'fastp': {'fn': '*report.json'}}] [2025-02-19 12:14:38,241] multiqc [DEBUG ] Command used: /home/sam/programs/mambaforge/bin/multiqc . --cl-config sp: { fastp: { fn: '*report.json' } } --interactive [2025-02-19 12:14:39,029] multiqc [WARNING] MultiQC Version v1.27 now available! [2025-02-19 12:14:39,030] multiqc [DEBUG ] Working dir : /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/01.20-D-Apul-WGBS-trimming-fastp-FastQC-MultiQC [2025-02-19 12:14:39,030] multiqc [DEBUG ] Template : default [2025-02-19 12:14:39,031] multiqc [DEBUG ] Running Python 3.10.10 | packaged by conda-forge | (main, Mar 24 2023, 20:08:06) [GCC 11.3.0] [2025-02-19 12:14:39,033] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, hifiasm, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, gopeaks, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dragen_fastqc, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, umitools, bbmap, bismark, biscuit, diamond, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, cellranger, snpsplit, odgi, pangolin, nextclade, humid, kat, leehom, adapterRemoval, bbduk, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, motus, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, filtlong, prinseqplusplus, pychopper, porechop, pycoqc, minionqc, anglerfish, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2025-02-19 12:14:39,034] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmp6kdtuopd [2025-02-19 12:14:40,679] multiqc [INFO ] Search path : /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/01.20-D-Apul-WGBS-trimming-fastp-FastQC-MultiQC [2025-02-19 12:15:03,424] multiqc [DEBUG ] Summary of files that were skipped by the search: [skipped_module_specific_max_filesize: 1240] // [skipped_no_match: 320] // [skipped_ignore_pattern: 160] [2025-02-19 12:15:05,773] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.7.1 [2025-02-19 12:15:05,792] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.7.1 [2025-02-19 12:15:05,794] multiqc [DEBUG ] No samples found: custom_content [2025-02-19 12:15:05,837] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-225-TP3_R1_001.fastp-trim.report.json [2025-02-19 12:15:05,847] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-139-TP4_R1_001.fastp-trim.report.json [2025-02-19 12:15:05,872] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-237-TP2_R1_001.fastp-trim.report.json [2025-02-19 12:15:05,890] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-173-TP4_R1_001.fastp-trim.report.json [2025-02-19 12:15:05,909] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-145-TP3_R1_001.fastp-trim.report.json [2025-02-19 12:15:05,932] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-225-TP2_R1_001.fastp-trim.report.json [2025-02-19 12:15:05,943] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-229-TP1_R1_001.fastp-trim.report.json [2025-02-19 12:15:05,957] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-244-TP3_R1_001.fastp-trim.report.json [2025-02-19 12:15:05,969] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-265-TP3_R1_001.fastp-trim.report.json [2025-02-19 12:15:05,983] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-265-TP1_R1_001.fastp-trim.report.json [2025-02-19 12:15:05,997] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-229-TP4_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,012] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-145-TP2_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,029] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-139-TP2_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,040] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-237-TP1_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,053] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-265-TP4_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,063] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-150-TP2_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,076] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-145-TP4_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,089] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-237-TP4_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,104] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-229-TP3_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,124] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-139-TP1_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,137] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-145-TP1_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,157] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-150-TP1_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,184] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-173-TP3_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,229] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-186-TP2_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,254] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-225-TP1_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,286] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-186-TP3_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,315] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-150-TP3_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,331] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-244-TP2_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,350] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-173-TP1_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,375] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-139-TP3_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,400] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-225-TP4_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,429] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-244-TP1_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,454] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-244-TP4_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,467] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-186-TP1_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,491] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-229-TP2_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,515] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-150-TP4_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,527] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-265-TP2_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,565] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-237-TP3_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,575] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-186-TP4_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,599] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: ACR-173-TP2_R1_001.fastp-trim.report.json [2025-02-19 12:15:06,605] multiqc.modules.fastp.fastp [INFO ] Found 40 reports [2025-02-19 12:15:42,728] multiqc.modules.fastqc.fastqc [INFO ] Found 80 reports [2025-02-19 12:15:46,305] multiqc [INFO ] Compressing plot data [2025-02-19 12:15:55,939] multiqc [INFO ] Report : multiqc_report.html [2025-02-19 12:15:55,940] multiqc [INFO ] Data : multiqc_data [2025-02-19 12:15:55,940] multiqc [DEBUG ] Moving data file from '/tmp/tmp6kdtuopd/multiqc_data' to '/home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/01.20-D-Apul-WGBS-trimming-fastp-FastQC-MultiQC/multiqc_data' [2025-02-19 12:15:56,273] multiqc [INFO ] MultiQC complete