FastQCFastQC Report
Fri 3 Jan 2025
1H2_R1_001.fastp-trim.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename1H2_R1_001.fastp-trim.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44192297
Total Bases5.1 Gbp
Sequences flagged as poor quality0
Sequence length15-125
%GC21

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATTGGGTTAAAATTTTAGTGTATGGTATTTTGTAGAAAAAGTTGTTTA460420.10418557786213287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)