FastQCFastQC Report
Mon 7 Oct 2024
109--2E2_R1_001.fastp-trim.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename109--2E2_R1_001.fastp-trim.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16825493
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length15-130
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCGAAGAGCATCACCCCAACCCCAAAGCAACGCCGTTGCCTGGCACC385480.22910472816457741No Hit
GAAGAGCTGATGCTCGCCCTCCCGTCCCAGGAGGATGGCCTGGCTGATGA371560.22083156790710384No Hit
TTAAACTGGTTTGAGTAAAGTCACTTTTTTGGTTGTTGTTGAAATTCCAT211410.12564862141038008No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT199380.11849875661889966No Hit
CTGCCTCCCTCTGATACTAAGATGATTCATTTTTCAGTTCTCTTCATTAC190480.11320916421290003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)