FastQCFastQC Report
Mon 7 Oct 2024
108--2D2_R1_001.fastp-trim.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename108--2D2_R1_001.fastp-trim.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23236271
Total Bases2.9 Gbp
Sequences flagged as poor quality0
Sequence length15-130
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT482740.2077527844291367No Hit
CCCCCGAAGAGCATCACCCCAACCCCAAAGCAACGCCGTTGCCTGGCACC287870.12388820908483981No Hit
GAAGAGCTGATGCTCGCCCTCCCGTCCCAGGAGGATGGCCTGGCTGATGA283180.12186981293168771No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)