FastQCFastQC Report
Tue 31 Dec 2024
1C6_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename1C6_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37789684
Total Bases5.6 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC21

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATACTTTTTACAACATTTTACTAAAAATTAAATCAAAACCCTAATACAC484760.1282783947068729No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)