FastQCFastQC Report
Fri 4 Oct 2024
108--2D2_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename108--2D2_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23636244
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1832810.7754235402206883No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1508930.6383966928078759No Hit
GGAAAACTAAGATGGATTAAACTGGACGGGAAGTTCGAAAGAGCGAAGAA623170.26365018062937584No Hit
GGGAAAACTAAGATGGATTAAACTGGACGGGAAGTTCGAAAGAGCGAAGA345940.14635997157585612No Hit
AGGACGAGGATGGAGATTATGAAGAGCTGATGCTCGCCCTCCCGTCCCAG289640.12254062024406247No Hit
GGCTAGATGAGCAGAGAAGACCCCCGAAGAGCATCACCCCAACCCCAAAG278600.11786982737189546No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)