---
author: Sam White
toc-title: Contents
toc-depth: 5
toc-location: left
layout: post
title: FastQC-MultiQC - C.bairdi Raw RNAseq from NWGSC
date: '2020-04-14 07:45'
tags:
  - fastqc
  - multiqc
  - swoose
  - Tanner crab
  - Chionoecetes bairdi
categories:
  - 2020
  - Miscellaneous
---
Yesterday, we [received the last of the RNAseq data for the _C.bairdi_ crab project from NWGSC](https://robertslab.github.io/sams-notebook/posts/2020/2020-04-13-Data-Received---C.bairdi-RNAseq-from-NWGSC/). FastQC, followed by MultiQC was run on the raw FastQ reads on my computer (swoose).


---

# RESULTS

Output folder:

- [20200414_cbai_RNAseq_fastqc_multiqc/](https://gannet.fish.washington.edu/Atumefaciens/20200414_cbai_RNAseq_fastqc_multiqc/)

MultiQC report (HTML):

- [20200414_cbai_RNAseq_fastqc_multiqc/multiqc_report.html](https://gannet.fish.washington.edu/Atumefaciens/20200414_cbai_RNAseq_fastqc_multiqc/multiqc_report.html)

Will get the FastQC results URLs put in the [nightingales Google Sheet](http://b.link/nightingales).
