---
author: Sam White
toc-title: Contents
toc-depth: 5
toc-location: left
layout: post
title: SRA Submission - Hollie's Juvenile OA BS-seq Data
date: '2019-09-18 14:03'
tags:
  - Panopea generosa
  - geoduck
  - sequence read archive
  - NCBI
  - PRJNA566166
  - SAMN12783509
  - SAMN12783510
  - SAMN12783511
  - SAMN12783512
  - SAMN12783513
  - SAMN12783514
  - SAMN12783515
  - SAMN12783516
  - SAMN12783517
  - SAMN12783518
  - SAMN12783519
  - SAMN12783520
  - SAMN12783521
  - SAMN12783522
  - SAMN12783523
  - SAMN12783524
  - SAMN12783525
  - SAMN12783526
  - SAMN12783527
  - SAMN12783528
  - SAMN12783529
  - SAMN12783530
  - SAMN12783531
  - SAMN12783532
  - SAMN12783533
  - SAMN12783534
  - SAMN12783535
  - SAMN12783536
  - SAMN12783537
  - SAMN12783538
  - SAMN12783539
  - SAMN12783540
  - SAMN12783541
  - SAMN12783542
  - SAMN12783543
  - SAMN12783544
  - SAMN12783545
  - SAMN12783546
  - SAMN12783547
  - SAMN12783548
  - SAMN12783549
  - SAMN12783550
  - SAMN12783551
  - SAMN12783552
  - SAMN12783553
  - SAMN12783554
  - SAMN12783555
  - SAMN12783556
  - SAMN12783557
  - SAMN12783558
  - SAMN12783559
  - SAMN12783560
  - SRR10143660
  - SRR10143659
  - SRR10143648
  - SRR10143637
  - SRR10143626
  - SRR10143615
  - SRR10143612
  - SRR10143611
  - SRR10143610
  - SRR10143609
  - SRR10143658
  - SRR10143657
  - SRR10143656
  - SRR10143655
  - SRR10143654
  - SRR10143653
  - SRR10143652
  - SRR10143651
  - SRR10143650
  - SRR10143649
  - SRR10143647
  - SRR10143646
  - SRR10143645
  - SRR10143644
  - SRR10143643
  - SRR10143642
  - SRR10143641
  - SRR10143640
  - SRR10143639
  - SRR10143638
  - SRR10143636
  - SRR10143635
  - SRR10143634
  - SRR10143633
  - SRR10143632
  - SRR10143631
  - SRR10143630
  - SRR10143629
  - SRR10143628
  - SRR10143627
  - SRR10143625
  - SRR10143624
  - SRR10143623
  - SRR10143622
  - SRR10143621
  - SRR10143620
  - SRR10143619
  - SRR10143618
  - SRR10143617
  - SRR10143616
  - SRR10143614
  - SRR10143613

categories:
  - 2019
  - SRA Submissions
---
Submitted sequencing data (52 samples; see table below) from Hollie's BS-seq project looking at differences in DNA methylation between juvenile geoduck exposed to different pHs over time.


BioProject Accession:

- [PRJNA566166](http://www.ncbi.nlm.nih.gov/bioproject/566166)

---

Table of samples submitted and their SRA and BioSample Accession numbers:

| SRA ACCESSION                                                     | BIOSAMPLE ACCESSION                                             | READ PAIR 1                      | READ PAIR 2                      |
|-------------------------------------------------------------------|-----------------------------------------------------------------|----------------------------------|----------------------------------|
| [SRR10143660](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143660) | [SAMN12783509](https://www.ncbi.nlm.nih.gov/biosample/12783509) | EPI-41_S38_L005_R1_001.fastq.gz  | EPI-41_S38_L005_R2_001.fastq.gz  |
| [SRR10143659](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143659) | [SAMN12783510](https://www.ncbi.nlm.nih.gov/biosample/12783510) | EPI-42_S39_L005_R1_001.fastq.gz  | EPI-42_S39_L005_R2_001.fastq.gz  |
| [SRR10143648](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143648) | [SAMN12783511](https://www.ncbi.nlm.nih.gov/biosample/12783511) | EPI-43_S40_L005_R1_001.fastq.gz  | EPI-43_S40_L005_R2_001.fastq.gz  |
| [SRR10143637](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143637) | [SAMN12783512](https://www.ncbi.nlm.nih.gov/biosample/12783512) | EPI-44_S41_L005_R1_001.fastq.gz  | EPI-44_S41_L005_R2_001.fastq.gz  |
| [SRR10143626](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143626) | [SAMN12783513](https://www.ncbi.nlm.nih.gov/biosample/12783513) | EPI-103_S27_L005_R1_001.fastq.gz | EPI-103_S27_L005_R2_001.fastq.gz |
| [SRR10143615](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143615) | [SAMN12783514](https://www.ncbi.nlm.nih.gov/biosample/12783514) | EPI-104_S28_L005_R1_001.fastq.gz | EPI-104_S28_L005_R2_001.fastq.gz |
| [SRR10143612](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143612) | [SAMN12783515](https://www.ncbi.nlm.nih.gov/biosample/12783515) | EPI-111_S29_L005_R1_001.fastq.gz | EPI-111_S29_L005_R2_001.fastq.gz |
| [SRR10143611](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143611) | [SAMN12783516](https://www.ncbi.nlm.nih.gov/biosample/12783516) | EPI-113_S30_L005_R1_001.fastq.gz | EPI-113_S30_L005_R2_001.fastq.gz |
| [SRR10143610](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143610) | [SAMN12783517](https://www.ncbi.nlm.nih.gov/biosample/12783517) | EPI-119_S31_L005_R1_001.fastq.gz | EPI-119_S31_L005_R2_001.fastq.gz |
| [SRR10143609](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143609) | [SAMN12783518](https://www.ncbi.nlm.nih.gov/biosample/12783518) | EPI-120_S32_L005_R1_001.fastq.gz | EPI-120_S32_L005_R2_001.fastq.gz |
| [SRR10143658](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143658) | [SAMN12783519](https://www.ncbi.nlm.nih.gov/biosample/12783519) | EPI-127_S33_L005_R1_001.fastq.gz | EPI-127_S33_L005_R2_001.fastq.gz |
| [SRR10143657](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143657) | [SAMN12783520](https://www.ncbi.nlm.nih.gov/biosample/12783520) | EPI-128_S34_L005_R1_001.fastq.gz | EPI-128_S34_L005_R2_001.fastq.gz |
| [SRR10143656](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143656) | [SAMN12783521](https://www.ncbi.nlm.nih.gov/biosample/12783521) | EPI-135_S35_L005_R1_001.fastq.gz | EPI-135_S35_L005_R2_001.fastq.gz |
| [SRR10143655](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143655) | [SAMN12783522](https://www.ncbi.nlm.nih.gov/biosample/12783522) | EPI-136_S36_L005_R1_001.fastq.gz | EPI-136_S36_L005_R2_001.fastq.gz |
| [SRR10143654](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143654) | [SAMN12783523](https://www.ncbi.nlm.nih.gov/biosample/12783523) | EPI-143_S37_L005_R1_001.fastq.gz | EPI-143_S37_L005_R2_001.fastq.gz |
| [SRR10143653](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143653) | [SAMN12783524](https://www.ncbi.nlm.nih.gov/biosample/12783524) | EPI-145_S38_L005_R1_001.fastq.gz | EPI-145_S38_L005_R2_001.fastq.gz |
| [SRR10143652](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143652) | [SAMN12783525](https://www.ncbi.nlm.nih.gov/biosample/12783525) | EPI-151_S2_L002_R1_001.fastq.gz  | EPI-151_S2_L002_R2_001.fastq.gz  |
| [SRR10143651](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143651) | [SAMN12783526](https://www.ncbi.nlm.nih.gov/biosample/12783526) | EPI-152_S3_L002_R1_001.fastq.gz  | EPI-152_S3_L002_R2_001.fastq.gz  |
| [SRR10143650](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143650) | [SAMN12783527](https://www.ncbi.nlm.nih.gov/biosample/12783527) | EPI-153_S4_L002_R1_001.fastq.gz  | EPI-153_S4_L002_R2_001.fastq.gz  |
| [SRR10143649](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143649) | [SAMN12783528](https://www.ncbi.nlm.nih.gov/biosample/12783528) | EPI-154_S5_L002_R1_001.fastq.gz  | EPI-154_S5_L002_R2_001.fastq.gz  |
| [SRR10143647](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143647) | [SAMN12783529](https://www.ncbi.nlm.nih.gov/biosample/12783529) | EPI-159_S6_L002_R1_001.fastq.gz  | EPI-159_S6_L002_R2_001.fastq.gz  |
| [SRR10143646](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143646) | [SAMN12783530](https://www.ncbi.nlm.nih.gov/biosample/12783530) | EPI-160_S7_L002_R1_001.fastq.gz  | EPI-160_S7_L002_R2_001.fastq.gz  |
| [SRR10143645](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143645) | [SAMN12783531](https://www.ncbi.nlm.nih.gov/biosample/12783531) | EPI-161_S8_L002_R1_001.fastq.gz  | EPI-161_S8_L002_R2_001.fastq.gz  |
| [SRR10143644](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143644) | [SAMN12783532](https://www.ncbi.nlm.nih.gov/biosample/12783532) | EPI-162_S9_L002_R1_001.fastq.gz  | EPI-162_S9_L002_R2_001.fastq.gz  |
| [SRR10143643](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143643) | [SAMN12783533](https://www.ncbi.nlm.nih.gov/biosample/12783533) | EPI-167_S10_L002_R1_001.fastq.gz | EPI-167_S10_L002_R2_001.fastq.gz |
| [SRR10143642](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143642) | [SAMN12783534](https://www.ncbi.nlm.nih.gov/biosample/12783534) | EPI-168_S11_L002_R1_001.fastq.gz | EPI-168_S11_L002_R2_001.fastq.gz |
| [SRR10143641](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143641) | [SAMN12783535](https://www.ncbi.nlm.nih.gov/biosample/12783535) | EPI-169_S12_L002_R1_001.fastq.gz | EPI-169_S12_L002_R2_001.fastq.gz |
| [SRR10143640](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143640) | [SAMN12783536](https://www.ncbi.nlm.nih.gov/biosample/12783536) | EPI-170_S13_L002_R1_001.fastq.gz | EPI-170_S13_L002_R2_001.fastq.gz |
| [SRR10143639](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143639) | [SAMN12783537](https://www.ncbi.nlm.nih.gov/biosample/12783537) | EPI-175_S14_L003_R1_001.fastq.gz | EPI-175_S14_L003_R2_001.fastq.gz |
| [SRR10143638](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143638) | [SAMN12783538](https://www.ncbi.nlm.nih.gov/biosample/12783538) | EPI-176_S15_L003_R1_001.fastq.gz | EPI-176_S15_L003_R2_001.fastq.gz |
| [SRR10143636](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143636) | [SAMN12783539](https://www.ncbi.nlm.nih.gov/biosample/12783539) | EPI-181_S16_L003_R1_001.fastq.gz | EPI-181_S16_L003_R2_001.fastq.gz |
| [SRR10143635](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143635) | [SAMN12783540](https://www.ncbi.nlm.nih.gov/biosample/12783540) | EPI-182_S17_L003_R1_001.fastq.gz | EPI-182_S17_L003_R2_001.fastq.gz |
| [SRR10143634](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143634) | [SAMN12783541](https://www.ncbi.nlm.nih.gov/biosample/12783541) | EPI-184_S18_L003_R1_001.fastq.gz | EPI-184_S18_L003_R2_001.fastq.gz |
| [SRR10143633](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143633) | [SAMN12783542](https://www.ncbi.nlm.nih.gov/biosample/12783542) | EPI-185_S19_L003_R1_001.fastq.gz | EPI-185_S19_L003_R2_001.fastq.gz |
| [SRR10143632](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143632) | [SAMN12783543](https://www.ncbi.nlm.nih.gov/biosample/12783543) | EPI-187_S20_L003_R1_001.fastq.gz | EPI-187_S20_L003_R2_001.fastq.gz |
| [SRR10143631](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143631) | [SAMN12783544](https://www.ncbi.nlm.nih.gov/biosample/12783544) | EPI-188_S21_L003_R1_001.fastq.gz | EPI-188_S21_L003_R2_001.fastq.gz |
| [SRR10143630](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143630) | [SAMN12783545](https://www.ncbi.nlm.nih.gov/biosample/12783545) | EPI-193_S22_L003_R1_001.fastq.gz | EPI-193_S22_L003_R2_001.fastq.gz |
| [SRR10143629](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143629) | [SAMN12783546](https://www.ncbi.nlm.nih.gov/biosample/12783546) | EPI-194_S23_L003_R1_001.fastq.gz | EPI-194_S23_L003_R2_001.fastq.gz |
| [SRR10143628](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143628) | [SAMN12783547](https://www.ncbi.nlm.nih.gov/biosample/12783547) | EPI-199_S24_L003_R1_001.fastq.gz | EPI-199_S24_L003_R2_001.fastq.gz |
| [SRR10143627](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143627) | [SAMN12783548](https://www.ncbi.nlm.nih.gov/biosample/12783548) | EPI-200_S25_L003_R1_001.fastq.gz | EPI-200_S25_L003_R2_001.fastq.gz |
| [SRR10143625](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143625) | [SAMN12783549](https://www.ncbi.nlm.nih.gov/biosample/12783549) | EPI-205_S26_L004_R1_001.fastq.gz | EPI-205_S26_L004_R2_001.fastq.gz |
| [SRR10143624](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143624) | [SAMN12783550](https://www.ncbi.nlm.nih.gov/biosample/12783550) | EPI-206_S27_L004_R1_001.fastq.gz | EPI-206_S27_L004_R2_001.fastq.gz |
| [SRR10143623](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143623) | [SAMN12783551](https://www.ncbi.nlm.nih.gov/biosample/12783551) | EPI-208_S28_L004_R1_001.fastq.gz | EPI-208_S28_L004_R2_001.fastq.gz |
| [SRR10143622](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143622) | [SAMN12783552](https://www.ncbi.nlm.nih.gov/biosample/12783552) | EPI-209_S29_L004_R1_001.fastq.gz | EPI-209_S29_L004_R2_001.fastq.gz |
| [SRR10143621](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143621) | [SAMN12783553](https://www.ncbi.nlm.nih.gov/biosample/12783553) | EPI-214_S30_L004_R1_001.fastq.gz | EPI-214_S30_L004_R2_001.fastq.gz |
| [SRR10143620](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143620) | [SAMN12783554](https://www.ncbi.nlm.nih.gov/biosample/12783554) | EPI-215_S31_L004_R1_001.fastq.gz | EPI-215_S31_L004_R2_001.fastq.gz |
| [SRR10143619](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143619) | [SAMN12783555](https://www.ncbi.nlm.nih.gov/biosample/12783555) | EPI-220_S32_L004_R1_001.fastq.gz | EPI-220_S32_L004_R2_001.fastq.gz |
| [SRR10143618](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143618) | [SAMN12783556](https://www.ncbi.nlm.nih.gov/biosample/12783556) | EPI-221_S33_L004_R1_001.fastq.gz | EPI-221_S33_L004_R2_001.fastq.gz |
| [SRR10143617](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143617) | [SAMN12783557](https://www.ncbi.nlm.nih.gov/biosample/12783557) | EPI-226_S34_L004_R1_001.fastq.gz | EPI-226_S34_L004_R2_001.fastq.gz |
| [SRR10143616](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143616) | [SAMN12783558](https://www.ncbi.nlm.nih.gov/biosample/12783558) | EPI-227_S35_L004_R1_001.fastq.gz | EPI-227_S35_L004_R2_001.fastq.gz |
| [SRR10143614](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143614) | [SAMN12783559](https://www.ncbi.nlm.nih.gov/biosample/12783559) | EPI-229_S36_L004_R1_001.fastq.gz | EPI-229_S36_L004_R2_001.fastq.gz |
| [SRR10143613](https://www.ncbi.nlm.nih.gov/sra/?term=SRR10143613) | [SAMN12783560](https://www.ncbi.nlm.nih.gov/biosample/12783560) | EPI-230_S37_L004_R1_001.fastq.gz | EPI-230_S37_L004_R2_001.fastq.gz |
