---
author: Sam White
toc-title: Contents
toc-depth: 5
toc-location: left
date: 2018-04-21 22:48:23+00:00
layout: post
slug: data-management-geoduck-phase-genomics-hi-c-data
title: Data Management - Geoduck Phase Genomics Hi-C Data
categories:
  - 2018
  - Geoduck Genome Sequencing
  - Samples Received
tags:
  - assembly
  - geoduck
  - Hi-C
  - Panopea generosa
  - phase genomics
---

We received sequencing/assembly data from Phase Genomics.

The data contains two assemblies, produced on two different dates.

All data is here: [20180421_geoduck_hi-c](https://owl.fish.washington.edu/Athaliana/20180421_geoduck_hi-c/)

All FASTQ files (four files; `Geoduck_HiC*.gz`) were copied to Nightingales:





  * [https://owl.fish.washington.edu/nightingales/P_generosa/](http://owl.fish.washington.edu/nightingales/P_generosa/)



MD5 checksums were verified and appended to the Nightingales checksum file:



  * [https://owl.fish.washington.edu/nightingales/P_generosa/checksums.md5](http://owl.fish.washington.edu/nightingales/P_generosa/checksums.md5)



Nightingales sequencing inventory was updated (Google Sheet):



  * [Nightingales inventory](https://docs.google.com/spreadsheets/d/1_XqIOPVHSBVGscnjzDSWUeRL7HUHXfaHxVzec-I-8Xk/edit?usp=sharing)



The two assemblies (and assembly stats) they provided are here:



  * [20180403 assembly (FASTA)](https://owl.fish.washington.edu/Athaliana/20180421_geoduck_hi-c/Results/geoduck_roberts%20results%202018-04-03%2011%ef%80%a205%ef%80%a241.596285/PGA_assembly.fasta)



    * [20180403 assembly stats (TXT)](https://owl.fish.washington.edu/Athaliana/20180421_geoduck_hi-c/Results/geoduck_roberts%20results%202018-04-03%2011%ef%80%a205%ef%80%a241.596285/REPORT.txt)




  * [20180421 assembly (FASTA)](https://owl.fish.washington.edu/Athaliana/20180421_geoduck_hi-c/Results/geoduck_roberts%20results%202018-04-21%2018%ef%80%a209%ef%80%a204.514704/PGA_assembly.fasta)



    * [20180421 assembly stats (TXT)](https://owl.fish.washington.edu/Athaliana/20180421_geoduck_hi-c/Results/geoduck_roberts%20results%202018-04-21%2018%ef%80%a209%ef%80%a204.514704/REPORT.txt)





I've updated the [project-geoduck-genome GitHub wiki](https://github.com/RobertsLab/project-geoduck-genome/wiki/Assemblies) with this info.