---
author: Sam White
toc-title: Contents
toc-depth: 5
toc-location: left
date: 2018-04-12 21:18:43+00:00
layout: post
slug: data-management-sra-submission-lsu-c-virginica-oil-spill-mbd-bs-seq-data
title: Data Management - SRA Submission LSU C.virginica Oil Spill MBD BS-seq Data
categories:
  - 2018
  - LSU C.virginica Oil Spill MBD BS Sequencing
tags:
  - Crassostrea virginica
  - Eastern oyster
  - GenBank
  - HB16
  - HB2
  - HB30
  - NB11
  - NB3
  - NB6
  - oil
  - SRA
---

Submitted the _Crassostrea virginica_ (Eastern oyster) MBD BS-seq data [we received on 20150413](https://robertslab.github.io/sams-notebook/posts/2015/2015-04-13-sequence-data-lsu-c-virginica-oil-spill-mbd-bs-seq-demultiplexed/) to NCBI Sequence Read Archive.

Data was uploaded via the web browser interface, as the FTP method was not functioning properly.

SRA deets are below (assigned FASTQ files to new BioProject and created new BioSamples).

SRA Study: [SRP139854](https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRP139854)
BioProject: [PRJNA449904](https://www.ncbi.nlm.nih.gov/bioproject/PRJNA449904)

BioSamples Table

<table >

<tr >
  Sample
  Treatment
  BioSample
</tr>

<tbody >
<tr >
  
<td >HB2
</td>
  
<td >oil 25,000ppm
</td>
  
<td >[SAMN08919868](https://www.ncbi.nlm.nih.gov/biosample/SAMN08919868)
</td>
</tr>
<tr >
  
<td >HB16
</td>
  
<td >oil 25,000ppm
</td>
  
<td >[SAMN08919921](https://www.ncbi.nlm.nih.gov/biosample/SAMN08919921)
</td>
</tr>
<tr >
  
<td >HB30
</td>
  
<td >oil 25,000ppm
</td>
  
<td >[SAMN08919953](https://www.ncbi.nlm.nih.gov/biosample/SAMN08919953)
</td>
</tr>
<tr >
  
<td >NB3
</td>
  
<td >unexposed
</td>
  
<td >[SAMN08919461](https://www.ncbi.nlm.nih.gov/biosample/SAMN08919461)
</td>
</tr>
<tr >
  
<td >NB6
</td>
  
<td >unexposed
</td>
  
<td >[SAMN08919577](https://www.ncbi.nlm.nih.gov/biosample/SAMN08919577)
</td>
</tr>
<tr >
  
<td >NB11
</td>
  
<td >unexposed
</td>
  
<td >[SAMN08919772](https://www.ncbi.nlm.nih.gov/biosample/SAMN08919772)
</td>
</tr>
</tbody>
</table>
