---
author: Sam White
toc-title: Contents
toc-depth: 5
toc-location: left
date: 2016-12-30 21:38:38+00:00
layout: post
slug: data-management-geoduck-rrbs-data-integrity-verification
title: Data Management - Geoduck RRBS Data Integrity Verification
categories:
  - 2016
  - Miscellaneous
tags:
  - geoduck
  - jupyter notebook
  - md5
  - Panopea generosa
  - RRBS
---

[Yesterday, I downloaded the Illumina FASTQ files provided by Genewiz](https://robertslab.github.io/sams-notebook/posts/2016/2016-12-30-data-received-geoduck-rrbs-sequencing-data/) for Hollie Putnam's reduced representation bisulfite geoduck libraries. However, Genewiz had not provided a checksum file at the time.

I received the checksum file from Genewiz and have verified that the data is intact. Verification is described in the Jupyter notebook below.

Data files are located here: [owl/web/nightingales/P_generosa](https://owl.fish.washington.edu/nightingales/P_generosa/)

Jupyter notebook (GitHub): [20161230_docker_geoduck_RRBS_md5_checks.ipynb](https://github.com/sr320/LabDocs/blob/master/jupyter_nbs/sam/20161230_docker_geoduck_RRBS_md5_checks.ipynb)

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