---
author: Sam White
toc-title: Contents
toc-depth: 5
toc-location: left
date: 2016-12-14 19:00:04+00:00
layout: post
slug: data-managment-trim-output-cells-from-jupyter-notebook
title: Data Managment - Trim Output Cells from Jupyter Notebook
categories:
  - 2016
  - Miscellaneous
tags:
  - jupyter notebook
---

Last week [I downloaded the final BGI data files and assemblies for Olympia oyster and geoduck genome sequencing projects](https://robertslab.github.io/sams-notebook/posts/2016/2016-12-14-data-management-download-final-bgi-genome-assembly-files/). However, the output from the download command made the Jupyter Notebook files too large to view and/or upload to GitHub. So, I had to trim the output cells from that notebook in order to render it usable/viewable.

The notebook below details how I did that and also examines the original version of that jumbo notebook to give some idea of what the command outputs were, for posterity.

Jupyter Notebook: [20161214_docker_notebook_trimming.ipynb](https://github.com/sr320/LabDocs/blob/master/jupyter_nbs/sam/20161214_docker_notebook_trimming.ipynb)

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