---
author: Sam White
toc-title: Contents
toc-depth: 5
toc-location: left
date: 2016-12-14 18:52:01+00:00
layout: post
slug: data-management-download-final-bgi-genome-assembly-files
title: Data Management - Download Final BGI Genome & Assembly Files
categories:
  - 2016
  - Geoduck Genome Sequencing
  - Olympia Oyster Genome Sequencing
tags:
  - BGI
  - geoduck
  - jupyter notebook
  - olympia oyster
  - Ostrea lurida
  - owl
  - Panopea generosa
---

We received info to download the final data and genome assembly files for geoduck and Olympia oyster from BGI.

In total, the downloads took a little over three days to complete!

The notebook detailing how the files were downloaded is below, but it should be noted that [I had to strip the output cells](https://robertslab.github.io/sams-notebook/posts/2016/2016-12-14-data-managment-trim-output-cells-from-jupyter-notebook/) because the output from the download command made the file too large to upload to GitHub, and the size of the notebook file would constantly crash the browser/computer that it was opened in. So, the notebook below is here for posterity.

Jupyter Notebook: [20161206_docker_BGI_genome_downloads.ipynb](https://github.com/sr320/LabDocs/blob/master/jupyter_nbs/sam/20161206_docker_BGI_genome_downloads.ipynb)



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