---
author: Sam White
toc-title: Contents
toc-depth: 5
toc-location: left
date: 2016-12-14 18:52:01+00:00
layout: post
slug: data-management-download-final-bgi-genome-assembly-files
title: Data Management - Download Final BGI Genome & Assembly Files
categories:
  - 2016
  - Geoduck Genome Sequencing
  - Olympia Oyster Genome Sequencing
tags:
  - BGI
  - geoduck
  - jupyter notebook
  - olympia oyster
  - Ostrea lurida
  - owl
  - Panopea generosa
---

We received info to download the final data and genome assembly files for geoduck and Olympia oyster from BGI.

In total, the downloads took a little over three days to complete!

The notebook detailing how the files were downloaded is below, but it should be noted that [I had to strip the output cells](https://robertslab.github.io/sams-notebook/posts/2016/2016-12-14-data-managment-trim-output-cells-from-jupyter-notebook/) because the output from the download command made the file too large to upload to GitHub, and the size of the notebook file would constantly crash the browser/computer that it was opened in. So, the notebook below is here for posterity.

Jupyter Notebook: [20161206_docker_BGI_genome_downloads.ipynb](https://github.com/sr320/LabDocs/blob/master/jupyter_nbs/sam/20161206_docker_BGI_genome_downloads.ipynb)



<iframe src="https://render.githubusercontent.com/view/ipynb?commit=7985418a2f3fa9af6b3c11e7a8d4bb2ab0981ded&enc_url=68747470733a2f2f7261772e67697468756275736572636f6e74656e742e636f6d2f73723332302f4c6162446f63732f373938353431386132663366613961663662336331316537613864346262326162303938316465642f6a7570797465725f6e62732f73616d2f32303136313230365f646f636b65725f4247495f67656e6f6d655f646f776e6c6f6164732e6970796e62&nwo=sr320%2FLabDocs&path=jupyter_nbs%2Fsam%2F20161206_docker_BGI_genome_downloads.ipynb&repository_id=13746500#3da85669-b514-4ba7-b887-c211815b117d" width="100%" height="2000" scrolling="yes"></iframe>
