---
author: Sam White
toc-title: Contents
toc-depth: 5
toc-location: left
date: 2016-07-27 22:51:52+00:00
layout: post
slug: data-analysis-pyrad-analysis-of-olympia-oyster-gbs-data
title: Data Analysis - PyRad Analysis of Olympia Oyster GBS Data
categories:
  - 2016
  - Genotype-by-sequencing at BGI
tags:
  - docker
  - EC2
  - jupyter notebook
  - olympia oyster
  - Ostrea lurida
  - pyrad
---

[Previously, I ran a PyRad analysis on just a subset of these samples in an attempt to have some data for a grant pre-proposal](https://robertslab.github.io/sams-notebook/posts/2016/2016-04-18-data-analysis-subset-olympia-oyster-gbs-data-from-bgi-as-single-population-using-pyrad/).

I've now completed a PyRad analysis on the full set. Now, I just need to figure out what to do with the output from this...

Jupyter Notebook: [20160715_ec2_oly_gbs_pyrad.ipynb](https://github.com/sr320/LabDocs/blob/master/jupyter_nbs/sam/20160715_ec2_oly_gbs_pyrad.ipynb)

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