---
author: Sam White
toc-title: Contents
toc-depth: 5
toc-location: left
date: 2016-04-11 19:34:12+00:00
layout: post
slug: data-management-concatenate-fastq-files-from-oly-mbdseq-project
title: Data Management - Concatenate FASTQ files from Oly MBDseq Project
categories:
  - 2016
  - MBD Enrichment for Sequencing at ZymoResearch
  - Olympia oyster reciprocal transplant
tags:
  - ipython notebook
  - jupyter notebook
  - MBD-Seq
  - olympia oyster
  - Ostrea lurida
---

Steven requested I concatenate [the MBDseq files we received for this project](https://owl.fish.washington.edu/nightingales/O_lurida/20160203_mbdseq/):





  * concatenate the s4, s5, s6 file sets for each individual



  * concatenate the full file sets for each individual






Ran the concatenations in the Jupyter (iPython) notebook below. All files were saved to Owl/nightingales/O_lurida/2016

Jupyter Notebook: [20160411_Concatenate_Oly_MBDseq.ipynb](https://eagle.fish.washington.edu/Arabidopsis/iPythonNotebooks/20160411_Concatenate_Oly_MBDseq.ipynb)

NBviewer: [20160411_Concatenate_Oly_MBDseq](https://nbviewer.jupyter.org/url/eagle.fish.washington.edu/Arabidopsis/iPythonNotebooks/20160411_Concatenate_Oly_MBDseq.ipynb)

<iframe src="https://nbviewer.jupyter.org/url/eagle.fish.washington.edu/Arabidopsis/iPythonNotebooks/20160411_Concatenate_Oly_MBDseq.ipynb" width="100%" height="2000" scrolling="yes"></iframe>