---
author: Sam White
toc-title: Contents
toc-depth: 5
toc-location: left
date: 2015-04-16 05:13:51+00:00
layout: post
slug: quality-trimming-c-gigas-larvae-oa-bs-seq-data
title: Quality Trimming - C.gigas Larvae OA BS-Seq Data
categories:
  - 2015
  - Crassostrea gigas larvae OA (2011) bisulfite sequencing
tags:
  - bioinformatics
  - BS-seq
  - Crassostrea gigas
  - FASTQC
  - ipython notebook
  - jupyter notebook
  - larvae
  - OA
  - ocean acidification
  - Pacific oyster
  - Trimmomatic
---

Jupyter (IPython) Notebook: [20150414_C_gigas_Larvae_OA_Trimmomatic_FASTQC.ipynb](https://eagle.fish.washington.edu/Arabidopsis/iPythonNotebooks/20150414_C_gigas_Larvae_OA_Trimmomatic_FASTQC.ipynb)

NBviewer: [20150414_C_gigas_Larvae_OA_Trimmomatic_FASTQC.ipynb](https://nbviewer.ipython.org/url/eagle.fish.washington.edu/Arabidopsis/iPythonNotebooks/20150414_C_gigas_Larvae_OA_Trimmomatic_FASTQC.ipynb)

<iframe src="https://nbviewer.ipython.org/url/eagle.fish.washington.edu/Arabidopsis/iPythonNotebooks/20150414_C_gigas_Larvae_OA_Trimmomatic_FASTQC.ipynb" width="100%" height="1000" scrolling="yes"></iframe>





### Trimmed FASTQC





#### 400ppm Index - GCCAAT



[20150414_trimmed_2212_lane2_GCCAAT_L002_R1_001_fastqc.html](https://eagle.fish.washington.edu/Arabidopsis/20150414_trimmed_2212_lane2_GCCAAT_L002_R1_001_fastqc.html)
[20150414_trimmed_2212_lane2_GCCAAT_L002_R1_002_fastqc.html](https://eagle.fish.washington.edu/Arabidopsis/20150414_trimmed_2212_lane2_GCCAAT_L002_R1_002_fastqc.html)
[20150414_trimmed_2212_lane2_GCCAAT_L002_R1_003_fastqc.html](https://eagle.fish.washington.edu/Arabidopsis/20150414_trimmed_2212_lane2_GCCAAT_L002_R1_003_fastqc.html)
[20150414_trimmed_2212_lane2_GCCAAT_L002_R1_004_fastqc.html](https://eagle.fish.washington.edu/Arabidopsis/20150414_trimmed_2212_lane2_GCCAAT_L002_R1_004_fastqc.html)
[20150414_trimmed_2212_lane2_GCCAAT_L002_R1_005_fastqc.html](https://eagle.fish.washington.edu/Arabidopsis/20150414_trimmed_2212_lane2_GCCAAT_L002_R1_005_fastqc.html)
[20150414_trimmed_2212_lane2_GCCAAT_L002_R1_006_fastqc.html](https://eagle.fish.washington.edu/Arabidopsis/20150414_trimmed_2212_lane2_GCCAAT_L002_R1_006_fastqc.html)



#### 





#### 





#### 1000ppm Index - CTTGTA



[20150414_trimmed_2212_lane2_CTTGTA_L002_R1_001_fastqc.html](20150414_trimmed_2212_lane2_CTTGTA_L002_R1_001_fastqc.html)
[20150414_trimmed_2212_lane2_CTTGTA_L002_R1_002_fastqc.html](20150414_trimmed_2212_lane2_CTTGTA_L002_R1_002_fastqc.html)
[20150414_trimmed_2212_lane2_CTTGTA_L002_R1_003_fastqc.html](20150414_trimmed_2212_lane2_CTTGTA_L002_R1_003_fastqc.html)
[20150414_trimmed_2212_lane2_CTTGTA_L002_R1_004_fastqc.html](20150414_trimmed_2212_lane2_CTTGTA_L002_R1_004_fastqc.html)




